Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq33 116 4e-21
>seq33
Length=2490231
Score = 116 bits (128), Expect = 4e-21
Identities = 122/160 (76%), Gaps = 3/160 (2%)
Strand=Plus/Minus
Query 21117 AAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAA 21176
|||||||| |||||||| || | ||| | |||||| | ||||||||| | ||| |
Sbjct 184267 AAATATTT---TAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTA 184211
Query 21177 TTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATG 21236
|| ||| ||||| || | |||| | ||||| || |||||||| |||||||||| ||
Sbjct 184210 CACCTGCTTTCTGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTG 184151
Query 21237 ATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAA 21276
||||| |||||| || ||||||||||||| || |||||
Sbjct 184150 ATATATGTTCCATGAAGTCAAATGGATTTTGGGAATTAAA 184111
Score = 96.9 bits (106), Expect = 4e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
||| ||||| ||||| || | |||||| || || || || || |||||||||||||||||
Sbjct 181667 ACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTGGAAACCGTAAAAACATCTTGC 181608
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
|| | |||||| || | ||| | | | | ||||||||||| || ||||||||
Sbjct 181607 TTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAAGTTTTCATTAACAATTCCATC 181548
Query 21886 ACTGGCGGCAAAAAATGCCAATATAT 21911
| ||| ||||| || ||||||| ||
Sbjct 181547 AGAGGCAGCAAAGAAAGCCAATACAT 181522
Score = 89.7 bits (98), Expect = 5e-13
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557
||||||| ||| || |||||||| || || | || |||||||||||||| || |
Sbjct 182650 CTTCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCT 182591
Query 21558 TTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAAT 21616
||||||||||||| | |||||| ||| || || || || | ||| || || ||||||||
Sbjct 182590 TTAACCAAAATATAGCCGCAAA-GCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAA 182532
Query 21617 GCAACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATTTTTCTGCCCATTT 21675
|||| | || ||| | | || | | || ||| | ||||||| ||||| |
Sbjct 182531 GCAATAATTCTTTCTGCAAAAGTGGCAGTC-TTAGAGGAGATCCATTCCAAAGCCCAGTC 182473
Query 21676 TGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAT 21725
|| |||| || | |||||| | || ||||| || || || |||| ||
Sbjct 182472 AGCTTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATAAT 182423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531790849455880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |