Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq33 116 4e-21 >seq33 Length=2490231 Score = 116 bits (128), Expect = 4e-21 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 21117 AAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAA 21176 |||||||| |||||||| || | ||| | |||||| | ||||||||| | ||| | Sbjct 184267 AAATATTT---TAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTA 184211 Query 21177 TTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATG 21236 || ||| ||||| || | |||| | ||||| || |||||||| |||||||||| || Sbjct 184210 CACCTGCTTTCTGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTG 184151 Query 21237 ATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||| |||||| || ||||||||||||| || ||||| Sbjct 184150 ATATATGTTCCATGAAGTCAAATGGATTTTGGGAATTAAA 184111 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||| ||||| ||||| || | |||||| || || || || || ||||||||||||||||| Sbjct 181667 ACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTGGAAACCGTAAAAACATCTTGC 181608 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | |||||| || | ||| | | | | ||||||||||| || |||||||| Sbjct 181607 TTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAAGTTTTCATTAACAATTCCATC 181548 Query 21886 ACTGGCGGCAAAAAATGCCAATATAT 21911 | ||| ||||| || ||||||| || Sbjct 181547 AGAGGCAGCAAAGAAAGCCAATACAT 181522 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| ||| || |||||||| || || | || |||||||||||||| || | Sbjct 182650 CTTCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCT 182591 Query 21558 TTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAAT 21616 ||||||||||||| | |||||| ||| || || || || | ||| || || |||||||| Sbjct 182590 TTAACCAAAATATAGCCGCAAA-GCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAA 182532 Query 21617 GCAACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATTTTTCTGCCCATTT 21675 |||| | || ||| | | || | | || ||| | ||||||| ||||| | Sbjct 182531 GCAATAATTCTTTCTGCAAAAGTGGCAGTC-TTAGAGGAGATCCATTCCAAAGCCCAGTC 182473 Query 21676 TGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAT 21725 || |||| || | |||||| | || ||||| || || || |||| || Sbjct 182472 AGCTTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATAAT 182423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531790849455880