Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq2248 136 5e-27 >seq2248 Length=16282 Score = 136 bits (150), Expect = 5e-27 Identities = 293/436 (67%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 42953 ATTGCGATTGGGAATGGTTGCGCGGCGAAATCAAAAAATATGGCTTGCGTAACTCAACTC 43012 ||| |||||||||| |||||| | ||||||| | | || |||||||||| || | Sbjct 518 ATTACGATTGGGAAGCACTGCGCGACAGTATCAAAACACACGGTCTGCGTAACTCCACGC 459 Query 43013 TTTCCGCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTG 43072 | || || || ||||| | || | || ||| | |||| | || ||||| || | Sbjct 458 TCTCTGCGTTGATGCCGTCGGAAACCTCGTCACAAATTTCCAACGCCACCAACGGTATCG 399 Query 43073 AACCGCCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGTTCATTCAACCAGGTAG 43132 |||| || ||||||| | ||| | || | || ||||| || || |||||| | Sbjct 398 AACCACCACGCGGTCACATCAGTATCAAGGCGTCAAAAGACGGCATTTTGCGCCAGGTGG 339 Query 43133 TACCGAACCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCG 43192 | ||| | | || | || ||| ||| || | || ||| |||| | || Sbjct 338 TGCCGGATTACAAAACCCTGAAGGATGCCTACGAATTACTGTGGGAAATGCCGAAC---- 283 Query 43193 GTAATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCT 43252 ||| | || || ||| | |||| | |||||||||||||| ||||| || || | Sbjct 282 --AATGACGGCTACCTGCAACTGGTTGGGCTGATGCAGAAGTTTGTCGATCAGGCTATTT 225 Query 43253 CTGCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCA 43312 |||| ||||||||||| |||||||| |||||| || |||||| |||||| Sbjct 224 CTGCCAACACCAACTACGATCCGGCGCGCTTCCCGTCAGGAAAAGTG-CCGATGAAACAG 166 Query 43313 TCATTGA-TGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACAAC 43371 | ||| |||| ||||| || | | | ||| ||||||| ||||||||||| ||| Sbjct 165 TTGCTGACTGACTTGCTTACCGCCTATAAGTTCGGGTTGAAAACGCTGTATTATCAAAAC 106 Query 43372 ACCCGCGACGGTGCAG 43387 ||||| |||||||||| Sbjct 105 ACCCGTGACGGTGCAG 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577352629319200