Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq57 111 1e-19 seq252 93.3 4e-14 >seq57 Length=2082711 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||||||||| | ||||||||| | ||||| | ||||| ||| | Sbjct 1620892 AATGCAAATTTTTGTAAAAACCCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTC 1620833 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || || || || || |||||||| || || ||||| || Sbjct 1620832 AGATACAATAGAGAACGTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCCGACCA 1620773 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | || | || ||| ||||| | ||||||| | | | | |||||||| Sbjct 1620772 ACAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAA 1620713 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| ||||||||||| | ||| | || | ||| ||||||||||| Sbjct 1620712 TATTCAGAAAGAATCTACTCTACATCTTGTACTCAGACTGAGAGGAGGA 1620664 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||||| |||||| |||||||| | ||||| || | Sbjct 1619067 ATGCAGATATTCGTGAAAACTTTAACAGGAAAAACGATTACCTTAGAAGTAGAACCTTCT 1619008 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| |||||| || || ||||| || ||||||||||| Sbjct 1619007 GATACAATTGAAAATGTAAAAGCTAAGATTCAAGATAAGGAAGGAATCCCTCCCGATCAG 1618948 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| || || || || | ||||||| ||| | ||||||||| Sbjct 1618947 CAAAGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGTCGAACTCTTTCTGATTATAAC 1618888 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| || ||| | ||| | || | ||| | ||||||| Sbjct 1618887 ATTCAGAAAGAGTCAACATTGCATCTTGTCCTTAGACTTCGAGGAGG 1618841 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || ||||||||||| | |||||| | ||||| || | Sbjct 1619980 AATGCAGATATTTGTTAAGACCTTAACTGGAAAGACCATTACCTTAGAAGTGGAACCGTC 1619921 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || ||| || ||| || |||||||| || || || ||||| Sbjct 1619920 TGACACGATAGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA 1619861 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||| |||| | | |||||||| | ||||||| | | | || || || Sbjct 1619860 ACAGAGATTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACTCTGTCTGACTACAA 1619801 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || ||||||||||| | ||| | || |||| | ||||||||| Sbjct 1619800 TATCCAGAAAGAATCTACTTTACATCTTGTACTAAGGCTTAGAGGAGGA 1619752 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || |||||| ||||||| | ||||| || | Sbjct 1621120 AATGCAGATCTTCGTCAAGACCCTTACAGGAAAAACGATTACACTTGAAGTTGAACCTTC 1621061 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| ||||| | || || || ||| || |||||||| || || || || || Sbjct 1621060 TGACACAATCGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCGCCAGACCA 1621001 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | || | || ||| ||||| | ||||||| | | | | |||||||| Sbjct 1621000 ACAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAA 1620941 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| ||||||||||| | ||| | || | ||| | ||||||||| Sbjct 1620940 TATTCAGAAAGAATCTACTCTACATCTTGTACTCAGACTAAGAGGAGGA 1620892 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || ||||| | ||||| | ||||| || ||| | Sbjct 1619523 ATGCAGATCTTTGTGAAGACTCTTACAGGAAAGACCATTACACTTGAAGTTGAA-CCATC 1619465 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| ||||| | || || || ||| || |||||||| || || || || || Sbjct 1619464 TGACACTATCGAAAATGTTAAGGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGACCA 1619405 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || | || | || ||| ||||| || ||||||| | | | || |||||||| Sbjct 1619404 ACAAAGGTTAATCTTCGCCGGAAAGCAGCTAGAAGATGGCCGCACTCTCTCAGATTATAA 1619345 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || |||||||| || | ||| | || | ||| ||||||||||| Sbjct 1619344 TATCCAGAAAGAATCAACTCTACATCTTGTACTCAGACTGAGAGGAGGA 1619296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || ||||| | ||||| | ||||| || | Sbjct 1620208 AATGCAGATCTTCGTTAAGACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 1620149 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || ||| |||||| || || ||||| ||||| || || || Sbjct 1620148 TGACACAATTGAAAATGTAAAAGCGAAGATTCAAGATAAGGAAGGAATACCACCTGACCA 1620089 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || |||||| || || || || | ||||||| | | | | ||||| || Sbjct 1620088 GCAAAGGTTGATTTTCGCTGGGAAACAGTTAGAAGATGGGCGCACCCTTTCTGATTACAA 1620029 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| |||||||| || ||||| | || |||||| ||||||||||| Sbjct 1620028 TATTCAGAAAGAATCAACTCTTCATCTTGTCTTAAGACTGAGAGGAGGA 1619980 >seq252 Length=802098 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 ||| |||||||| ||||| |||||| | |||| | ||| ||||| | |||||| |||| Sbjct 443791 AGGAATACCTCCTGATCAGCAGAGATTAATTTTTGCCGGTAAGCAGTTGGAAGATAACAG 443850 Query 24152 AAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAG 24211 || | ||||||||||| |||||||||||||| | || || ||| | ||| | || Sbjct 443851 AACTCTTTCTGATTATAACATACAAAAAGAATCTACTTTACACTTGGTGCTCAGACTAAG 443910 Query 24212 AGGAGG 24217 |||||| Sbjct 443911 AGGAGG 443916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429849348683235