Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq57 122 7e-23 seq504 95.1 1e-14 seq252 89.7 4e-13 >seq57 Length=2082711 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | || |||||||||||||| | ||| || ||| | Sbjct 1618839 ATGCAAATATTTGTGAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTTGA-ACCATC 1618781 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| | | || ||| |||||| || || ||||| | || ||| || Sbjct 1618780 TGACACTATTGAAAATGTGAAAGCGAAAATTCAAGACAAGGAAGGAATACCACCTGACCA 1618721 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| || || |||||||| ||||||| ||| || | |||||||| Sbjct 1618720 GCAAAGGTTGATTTTCGCAGGGAAACAATTGGAAGATGGTCGCACCTTGTCAGATTATAA 1618661 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 ||||| || || || ||| ||||| | || |||||||||| || ||||| Sbjct 1618660 TATTCAGAAGGAATCAACTTTACATCTAGTACTGAGATTGCGTGGCGGAAA 1618610 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| ||||| || || |||||||| ||||| | ||| |||| || Sbjct 1620664 AATGCAAATTTTTGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTGGAGCCCTC 1620605 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| | | |||||| ||||| ||||| ||||| |||| ||||| Sbjct 1620604 TGATACTATTGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATCCCACCAGATCA 1620545 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||||| ||| || || || || ||||||| | ||| | | ||||| || Sbjct 1620544 GCAGCGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTACAA 1620485 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||||| ||||| || Sbjct 1620484 TATTCAAAAGGAGTCCAC 1620467 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC--C 115342 ||||||||||||||| ||||| || || |||||||| ||||| | ||| ||| | | Sbjct 1620892 AATGCAAATTTTTGTAAAAACCCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTC 1620833 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||| | | || ||||| ||||| ||||||||||| | || || Sbjct 1620832 AGATACAATAGAGAAC--GTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCCGAC 1620775 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || |||||| | || | || || || || |||||||||| | || | | |||||| Sbjct 1620774 CAACAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTAT 1620715 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || ||||| ||||| |||||| ||||| | || | ||| || ||||||||| Sbjct 1620714 AATATTCAGAAAGAATCTACTCTACATCTTGTACTCAGACTGAGAGGAGGAA 1620663 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || ||||| || || |||||||| ||||| | ||| ||| || Sbjct 1619296 AATGCAAATTTTCGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTTGAGCCCTC 1619237 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| | | || ||| ||||| ||||| ||||| |||| ||||| Sbjct 1619236 TGATACTATTGAAAATGTTAAAGCCAAAATCCAGGATAAGGAAGGAATCCCACCAGATCA 1619177 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||||| ||| || || || || ||||||| | ||| | | ||||| || Sbjct 1619176 GCAGCGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTACAA 1619117 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||||| ||||| || Sbjct 1619116 TATTCAAAAGGAGTCCAC 1619099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || ||||| | || |||||||| |||||| | ||| || | Sbjct 1619067 ATGCAGATATTCGTGAAAACTTTAACAGGAAAAACGATTACCTTAGAAGTAGAACCTTCT 1619008 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | |||||| || ||| ||||| ||||| |||| |||||| Sbjct 1619007 GATACAATTGAAAATGTAAAAGCTAAGATTCAAGATAAGGAAGGAATCCCTCCCGATCAG 1618948 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| | |||| || || ||||| || ||||||| ||| | | ||||||||| Sbjct 1618947 CAAAGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGTCGAACTCTTTCTGATTATAAC 1618888 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| |||||||| || | ||| | || | ||| | |||||||| Sbjct 1618887 ATTCAGAAAGAGTCAACATTGCATCTTGTCCTTAGACTTCGAGGAGG 1618841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| ||||| || || |||||||| ||||| | ||| ||| | Sbjct 1619752 AATGCAAATTTTTGTGAAAACTCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTC 1619693 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | ||||| ||||| ||||||||||| | || ||||| Sbjct 1619692 TGATACAATAGAGAACGTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCAGATCA 1619633 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||||| ||| || || || |||||||||| | ||| | | ||||| || Sbjct 1619632 GCAGCGTCTTATTTTTGCTGGAAAGCAGTTAGAAGATGGCCGAACTCTATCTGATTACAA 1619573 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| ||||| || | ||| |||| Sbjct 1619572 TATTCAAAAGGAGTCCACCCTTCATTTGGT 1619543 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || ||||| || || || |||||||| ||||| | ||| || | Sbjct 1621120 AATGCAGATCTTCGTCAAGACCCTTACAGGAAAAACGATTACACTTGAAGTTGAACCTTC 1621061 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | | || || |||||| ||||||||||| | || || || Sbjct 1621060 TGACACAATCGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCGCCAGACCA 1621001 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | || | || || || || |||||||||| | || | | |||||||| Sbjct 1621000 ACAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAA 1620941 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| ||||| |||||| ||||| | || | ||| | ||||||||| Sbjct 1620940 TATTCAGAAAGAATCTACTCTACATCTTGTACTCAGACTAAGAGGAGGAA 1620891 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| || || | || ||||| ||||||||| | ||| ||| | Sbjct 1619980 AATGCAGATATTTGTTAAGACCTTAACTGGAAAGACCATTACCTTAGAAGTGGAACCGTC 1619921 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | | || ||| |||||| ||||||||||| | || ||||| Sbjct 1619920 TGACACGATAGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA 1619861 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || ||| | || | ||| ||||| || || ||||||| || || | || || || Sbjct 1619860 ACAGAGATTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACTCTGTCTGACTACAA 1619801 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || ||||| |||||| ||||| | || | || | ||||||||| Sbjct 1619800 TATCCAGAAAGAATCTACTTTACATCTTGTACTAAGGCTTAGAGGAGGAA 1619751 >seq504 Length=327254 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 115280 TTAAAA-ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA 115338 |||||| |||||||||||||| ||||| | ||||| ||||| |||||| | || || Sbjct 214300 TTAAAATATGCAAATTTTTGTGAAAACTTTGACGGGTAAAACAATTACCCTTGAGGTTGA 214241 Query 115339 GTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGT 115398 || ||||| ||| | | || || ||| || ||||||||||| | || Sbjct 214240 ACCCTCAGACACAATTGAAAATGTTAAGGCAAAGATCCAAGATAAAGAAGGAATTCCTCC 214181 Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 |||||||||||| | |||| ||| |||||||| ||||||||| ||| | |||| Sbjct 214180 AGATCAGCAAAGATTGATTTTTGCTGGCAAACAGCTAGAAGATGGACGCACCCTTTCCGA 214121 Query 115459 TTATAACATTCAAAAAG 115475 ||| || || || |||| Sbjct 214120 TTACAATATCCAGAAAG 214104 >seq252 Length=802098 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 ||||||||| ||| | |||| ||| || || || || |||||| ||| ||| | | || Sbjct 443803 TGATCAGCAGAGATTAATTTTTGCCGGTAAGCAGTTGGAAGATAACAGAACTCTTTCTGA 443862 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||| |||||||| |||||| |||| ||||| | ||| | ||||||| Sbjct 443863 TTATAACATACAAAAAGAATCTACTTTACACTTGGTGCTCAGACTAAGAGGAGG 443916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425258274176440