Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_007804.2
Length=39104
Score E
Sequences producing significant alignments: (Bits) Value
seq2617 96.9 9e-16
seq6037 95.1 3e-15
seq6242 93.3 1e-14
>seq2617
Length=13952
Score = 96.9 bits (106), Expect = 9e-16
Identities = 136/183 (74%), Gaps = 6/183 (3%)
Strand=Plus/Minus
Query 20279 TTGGTGGTGAACTGTGCAGGGTTGGCGTAACCGGCTAA-AAGGACCCGGCGCACCTTTCG 20337
|||| ||||||||| ||||||| ||||||||| |||||||||||| |||| ||
Sbjct 1380 TTGGCGGTGAACTGAATAGGGTTGAGACTACCGGCTAACAAGGACCCGGCGAGCCTTGCG 1321
Query 20338 GTGCCCCCACACAGCCCACCATAATACGAATGTGACCGTGCTATACGCATaaaaaaaC-C 20396
| |||||| ||||||||||| || | || || || || |||||||||||||| |
Sbjct 1320 GCTCCCCCATCCAGCCCACCATTATTCTGATATG-GCGGACT-GACGCATAAAAAAACAC 1263
Query 20397 GCT-TGCGCGGTGAATGCGCCTT-TTAGTAACCCGGGACGCCAATCCCGGCACTGGATTT 20454
||| | ||| ||||||||| ||||| | ||||| ||| |||||||| || ||
Sbjct 1262 GCTGTAGGCGTGTTATGCGCCTTGTTAGTTATCCGGGGTCTCAAACCCGGCACCTGAATT 1203
Query 20455 TGC 20457
|||
Sbjct 1202 TGC 1200
>seq6037
Length=3259
Score = 95.1 bits (104), Expect = 3e-15
Identities = 221/333 (66%), Gaps = 18/333 (5%)
Strand=Plus/Minus
Query 38766 ATGGCTAAATCAGCAGCAGAGCGCAAAGCCGCTCAGAGAGCCAGACAAGCTGCATCTGGT 38825
||| ||||||| ||||||| || |||||||| ||| | | || ||||
Sbjct 2425 ATGCCTAAATCCCCAGCAGAACGTAAAGCCGCCCAGCGGG-------AGG-----CTGGC 2378
Query 38826 GTGCGTAAGCTGGAAATTGTGCTTGATGCTCAGGAAATTGAAATGCTGGAGCGTAACTGT 38885
|| ||| | ||| || || ||| |||||||| | || |||||| || |||||
Sbjct 2377 GTAACAAAGTTTGAACTTAACCTCGATACTCAGGAACTGGACATGCTGCGCCGGAACTGC 2318
Query 38886 GCTACGCGTCGCCCCGGGCGTGCGCCTTACGAATTTGGTGAGTATATAGCGTTACTGATC 38945
||| || || || || | ||| ||||| | | |||||||| ||| ||||||
Sbjct 2317 GCTGTACGGCGACCAGGCAAAGAGCCCTACGACATGGACGAGTATATCCAGTTGCTGATC 2258
Query 38946 CGCCAGGATGATGCACGCGTGCACGGGCGTATAAAATCGATCAGCAGAAAACGTTGCGGT 39005
||| |||| || || | |||| ||| || |||||| |||||| |||||||||||
Sbjct 2257 CGCTAGGACGACGCCAGAGTGCGACAGCGGATTAAATCGCTCAGCAAGCAACGTTGCGGT 2198
Query 39006 AAGTGCGGCGAGAGAGTTCCAGTTA---ATTCATGCCCGTGTAATGGTGACTCGCAATGC 39062
|| || |||||| | | || || | | | ||| | | |||||||| |||||
Sbjct 2197 AAATGTGGCGAGTCATTGCCCGTCACAGAGTGTTGCATG---CAGGGTGACTCTGAATGC 2141
Query 39063 TGGGTGACTAAAGGCTGGCATGAAACGAAATTA 39095
||| || | || |||||||||| ||| ||
Sbjct 2140 TGGAACACAAGCGGATGGCATGAAATCAAACTA 2108
>seq6242
Length=2873
Score = 93.3 bits (102), Expect = 1e-14
Identities = 156/213 (73%), Gaps = 16/213 (8%)
Strand=Plus/Plus
Query 20279 TTGGTGGTGAACTGTGCAGGGTTGGCGTAAC---CGGCTAAA-AGGA--CCCGGCGCACC 20332
|||| ||||| ||| ||||||| || ||| |||||||| |||| ||||||| ||
Sbjct 1567 TTGGCGGTGAGCTGAACAGGGTT--CGAAACTACCGGCTAAACAGGAGACCCGGCGAGCC 1624
Query 20333 TTTCGGTGCCCCCACACAGCCCACCATAATACGAATGTGACCGTGCTATACGCATaaaaa 20392
|| ||| |||||| ||||||||||| || | || || | | | |||||||||||
Sbjct 1625 TTGCGGCTCCCCCATCCAGCCCACCATTATTCAGATATGGCGGACC--GACGCATAAAAA 1682
Query 20393 aaC-CGCT-TGCGCGGTGAATGCGCCT-TTTAG-TAACCCGGGACGCCAATCCCGGCACT 20448
||| |||| | ||| |||||||| ||||| || || ||| | |||||||||||
Sbjct 1683 AACACGCTGTAGGCGTGTTATGCGCCTGTTTAGTTATCCGGGGTTTCGAATCCCGGCACC 1742
Query 20449 GGATTTTGCCAGTGCCCGATT-ACTATGGCACA 20480
|||||||| ||| | |||| ||||| || ||
Sbjct 1743 TGATTTTGCAGGTG-CAGATTGACTATAGCGCA 1774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124986650691204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |