Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq2617 96.9 9e-16 seq6037 95.1 3e-15 seq6242 93.3 1e-14 >seq2617 Length=13952 Score = 96.9 bits (106), Expect = 9e-16 Identities = 136/183 (74%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 20279 TTGGTGGTGAACTGTGCAGGGTTGGCGTAACCGGCTAA-AAGGACCCGGCGCACCTTTCG 20337 |||| ||||||||| ||||||| ||||||||| |||||||||||| |||| || Sbjct 1380 TTGGCGGTGAACTGAATAGGGTTGAGACTACCGGCTAACAAGGACCCGGCGAGCCTTGCG 1321 Query 20338 GTGCCCCCACACAGCCCACCATAATACGAATGTGACCGTGCTATACGCATaaaaaaaC-C 20396 | |||||| ||||||||||| || | || || || || |||||||||||||| | Sbjct 1320 GCTCCCCCATCCAGCCCACCATTATTCTGATATG-GCGGACT-GACGCATAAAAAAACAC 1263 Query 20397 GCT-TGCGCGGTGAATGCGCCTT-TTAGTAACCCGGGACGCCAATCCCGGCACTGGATTT 20454 ||| | ||| ||||||||| ||||| | ||||| ||| |||||||| || || Sbjct 1262 GCTGTAGGCGTGTTATGCGCCTTGTTAGTTATCCGGGGTCTCAAACCCGGCACCTGAATT 1203 Query 20455 TGC 20457 ||| Sbjct 1202 TGC 1200 >seq6037 Length=3259 Score = 95.1 bits (104), Expect = 3e-15 Identities = 221/333 (66%), Gaps = 18/333 (5%) Strand=Plus/Minus Query 38766 ATGGCTAAATCAGCAGCAGAGCGCAAAGCCGCTCAGAGAGCCAGACAAGCTGCATCTGGT 38825 ||| ||||||| ||||||| || |||||||| ||| | | || |||| Sbjct 2425 ATGCCTAAATCCCCAGCAGAACGTAAAGCCGCCCAGCGGG-------AGG-----CTGGC 2378 Query 38826 GTGCGTAAGCTGGAAATTGTGCTTGATGCTCAGGAAATTGAAATGCTGGAGCGTAACTGT 38885 || ||| | ||| || || ||| |||||||| | || |||||| || ||||| Sbjct 2377 GTAACAAAGTTTGAACTTAACCTCGATACTCAGGAACTGGACATGCTGCGCCGGAACTGC 2318 Query 38886 GCTACGCGTCGCCCCGGGCGTGCGCCTTACGAATTTGGTGAGTATATAGCGTTACTGATC 38945 ||| || || || || | ||| ||||| | | |||||||| ||| |||||| Sbjct 2317 GCTGTACGGCGACCAGGCAAAGAGCCCTACGACATGGACGAGTATATCCAGTTGCTGATC 2258 Query 38946 CGCCAGGATGATGCACGCGTGCACGGGCGTATAAAATCGATCAGCAGAAAACGTTGCGGT 39005 ||| |||| || || | |||| ||| || |||||| |||||| ||||||||||| Sbjct 2257 CGCTAGGACGACGCCAGAGTGCGACAGCGGATTAAATCGCTCAGCAAGCAACGTTGCGGT 2198 Query 39006 AAGTGCGGCGAGAGAGTTCCAGTTA---ATTCATGCCCGTGTAATGGTGACTCGCAATGC 39062 || || |||||| | | || || | | | ||| | | |||||||| ||||| Sbjct 2197 AAATGTGGCGAGTCATTGCCCGTCACAGAGTGTTGCATG---CAGGGTGACTCTGAATGC 2141 Query 39063 TGGGTGACTAAAGGCTGGCATGAAACGAAATTA 39095 ||| || | || |||||||||| ||| || Sbjct 2140 TGGAACACAAGCGGATGGCATGAAATCAAACTA 2108 >seq6242 Length=2873 Score = 93.3 bits (102), Expect = 1e-14 Identities = 156/213 (73%), Gaps = 16/213 (8%) Strand=Plus/Plus Query 20279 TTGGTGGTGAACTGTGCAGGGTTGGCGTAAC---CGGCTAAA-AGGA--CCCGGCGCACC 20332 |||| ||||| ||| ||||||| || ||| |||||||| |||| ||||||| || Sbjct 1567 TTGGCGGTGAGCTGAACAGGGTT--CGAAACTACCGGCTAAACAGGAGACCCGGCGAGCC 1624 Query 20333 TTTCGGTGCCCCCACACAGCCCACCATAATACGAATGTGACCGTGCTATACGCATaaaaa 20392 || ||| |||||| ||||||||||| || | || || | | | ||||||||||| Sbjct 1625 TTGCGGCTCCCCCATCCAGCCCACCATTATTCAGATATGGCGGACC--GACGCATAAAAA 1682 Query 20393 aaC-CGCT-TGCGCGGTGAATGCGCCT-TTTAG-TAACCCGGGACGCCAATCCCGGCACT 20448 ||| |||| | ||| |||||||| ||||| || || ||| | ||||||||||| Sbjct 1683 AACACGCTGTAGGCGTGTTATGCGCCTGTTTAGTTATCCGGGGTTTCGAATCCCGGCACC 1742 Query 20449 GGATTTTGCCAGTGCCCGATT-ACTATGGCACA 20480 |||||||| ||| | |||| ||||| || || Sbjct 1743 TGATTTTGCAGGTG-CAGATTGACTATAGCGCA 1774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124986650691204