Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq57 154 1e-32 seq504 104 2e-17 seq252 84.2 2e-11 >seq57 Length=2082711 Score = 154 bits (170), Expect = 1e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || |||||||| || ||| |||| || | ||||| || | ||| Sbjct 1618839 ATGCAAATATTTGTGAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTTGAACCATCT 1618780 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || |||| || |||| ||| ||||| ||||| || ||||||||||| Sbjct 1618779 GACACTATTGAAAATGTGAAAGCGAAAATTCAA-GACAAGGAAGGAATACCACCTGACCA 1618721 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||| || || |||||||| ||||||| |||||| || ||||| || Sbjct 1618720 GCAAAGGTTGATTTTCGCAGGGAAACAATTGGAAGATGGTCGCACCTTGTCAGATTATAA 1618661 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 |||||| || ||||| || ||||| |||| || || | | || ||||| || Sbjct 1618660 TATTCAGAAGGAATCAACTTTACATCTAGTACTGAGATTGCGTGGCGGAAACTA 1618607 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| |||| || ||| | || || | ||||| ||| |||| Sbjct 1619752 AATGCAAATTTTTGTGAAAACTCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTC 1619693 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || ||| | ||| |||||| || |||||||| |||||||| || || Sbjct 1619692 TGATACAATAGAGAACGTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCAGATCA 1619633 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||||||||| || || || |||||||||| || ||| | |||||||| Sbjct 1619632 GCAGCGTCTTATTTTTGCTGGAAAGCAGTTAGAAGATGGCCGAACTCTATCTGATTACAA 1619573 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| || ||||| || ||||| || || |||| ||||| || Sbjct 1619572 TATTCAAAAGGAGTCCACCCTTCATTTGGTTCTTCGGCTCAGAGGGGG 1619525 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || |||| ||| | ||||| || | ||| Sbjct 1619523 ATGCAGATCTTTGTGAAGACTCTTACAGGAAAGACCATTACACTTGAAGTTGAACCATCT 1619464 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | || || |||| ||| || |||||||| |||||||| ||||| Sbjct 1619463 GACACTATCGAAAATGTTAAGGCCAAAATTCA-AGATAAAGAAGGAATTCCACCAGACCA 1619405 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| || || ||||||||| |||||| | ||||| || Sbjct 1619404 ACAAAGGTTAATCTTCGCCGGAAAGCAGCTAGAAGATGGCCGCACTCTCTCAGATTATAA 1619345 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || |||||||| || |||||| | || || || || |||||||||| Sbjct 1619344 TATCCAGAAAGAATCAACTCTACATCTTGTACTCAGACTGAGAGGAGGAA 1619295 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || || || || ||||| ||| ||||||| | ||||| || | ||| Sbjct 1620435 ATGCAGATATTCGTCAAAACGTTAACCGGAAAAACCATCACCTTAGAAGTAGAACCATCT 1620376 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || |||| || |||| ||| || |||||||| |||||||| || || Sbjct 1620375 GATACAATTGAAAATGTGAAAGCTAAAATTCAA-GATAAAGAAGGTATTCCACCAGATCA 1620317 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||| ||||| || || ||||||| |||||| || |||||||| Sbjct 1620316 ACAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACACTGTCTGATTACAA 1620257 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || ||||| |||||| | ||||| || || | || ||||| |||| Sbjct 1620256 TATACAGAAAGAGTCCACGTTGCATTTGGTTCTTCGTCTCAGAGGTGGAA 1620207 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || ||| | || ||| | ||||| || | || Sbjct 1621120 AATGCAGATCTTCGTCAAGACCCTTACAGGAAAAACGATTACACTTGAAGTTGAACCTTC 1621061 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| ||||| | ||| | |||| ||| || |||||||| ||||| || |||| Sbjct 1621060 TGACACAATCGAAAATGTTAAGGCTAAAATTCAA-GATAAAGAAGGAATTCCGCCAGACC 1621002 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || || ||||| || || |||||||||| |||||| | ||||| | Sbjct 1621001 AACAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATA 1620942 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||| |||||||| || |||||| | || || || ||||||||||||| Sbjct 1620941 ATATTCAGAAAGAATCTACTCTACATCTTGTACTCAGACTAAGAGGAGGAA 1620891 Score = 138 bits (152), Expect = 1e-27 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| |||| || ||| | || || | ||||||||| | || Sbjct 1620664 AATGCAAATTTTTGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTGGAGCCCTC 1620605 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| ||||| || | || |||| |||| || || || ||||| || ||||| || Sbjct 1620604 TGATACTATTGAA--AATGTAAAAGCCAAAATCCAG-GATAAGGAAGGAATCCCACCAGA 1620548 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| |||||||||| || || || || ||||||| || ||| | ||||| Sbjct 1620547 TCAGCAGCGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTA 1620488 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||| || ||||| || |||||||| || | || ||||| || Sbjct 1620487 CAATATTCAAAAGGAGTCCACCCTTCATTTAGTTCTTCGTCTTAGAGGTGG 1620437 Score = 129 bits (142), Expect = 5e-25 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| |||| || ||| | || || | ||||| ||| | || Sbjct 1619296 AATGCAAATTTTCGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTTGAGCCCTC 1619237 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| ||||| || | || |||| |||| || || || ||||| || ||||| || Sbjct 1619236 TGATACTATTGAA--AATGTTAAAGCCAAAATCCAG-GATAAGGAAGGAATCCCACCAGA 1619180 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| |||||||||| || || || || ||||||| || ||| | ||||| Sbjct 1619179 TCAGCAGCGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTA 1619120 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||| || ||||| || |||||||| || | || ||||| || Sbjct 1619119 CAATATTCAAAAGGAGTCCACCCTTCATTTAGTTCTTCGTCTTAGAGGTGG 1619069 Score = 123 bits (136), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||| | || || || | || || | ||||| || | || Sbjct 1620208 AATGCAGATCTTCGTTAAGACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 1620149 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || || | || |||| || | ||| || || ||||| || |||||||| Sbjct 1620148 TGACACAATTGAA--AATGTAAAAGCGAAGATTCAA-GATAAGGAAGGAATACCACCTGA 1620092 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | ||||| || || ||||| |||||||||| ||||| | ||||| Sbjct 1620091 CCAGCAAAGGTTGATTTTCGCTGGGAAACAGTTAGAAGATGGGCGCACCCTTTCTGATTA 1620032 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| |||||||| || || ||| | || |||| || |||||||||| Sbjct 1620031 CAATATTCAGAAAGAATCAACTCTTCATCTTGTCTTAAGACTGAGAGGAGGAA 1619979 Score = 109 bits (120), Expect = 5e-19 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 |||| |||||| || || ||||| || ||||| || || | || || | ||||| ||| Sbjct 1621352 GGAA-AATGCAGATCTTCGTAAAAACGTTGACGGGGAAGACAATAACTCTTGAAGTTGAG 1621294 Query 25053 TCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 | || || ||||| || | ||| | |||| ||| || || ||||| || || || Sbjct 1621293 CCTTCAGATACTATTGAAAACGTAAAGGCTAAAATTCAA-GATAAGGAAGGAATCCCTCC 1621235 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||| || || || | |||||||| || || || || ||||||| ||| || | ||| Sbjct 1621234 TGATCAGCAACGATTAATTTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACCCTATCCGA 1621175 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| || || || |||||| | ||||| || || | || ||||| |||| Sbjct 1621174 TTACAATATACAGAAGGAGTCCACGTTGCATTTGGTTCTTCGACTCAGAGGTGGAA 1621119 >seq504 Length=327254 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || |||||||| |||||| | || || | || || || | || Sbjct 214293 ATGCAAATTTTTGTGAAAACTTTGACGGGTAAAACAATTACCCTTGAGGTTGAACCCTCA 214234 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||| ||| || |||||||| ||||| || || || Sbjct 214233 GACACAATTGAAAATGTTAAGGCAAAGATCCAAGATAAAGAAGGAATTCCTCCAGATCAG 214174 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | |||||||| |||||||| ||||||||| ||||| | |||||||||| Sbjct 214173 CAAAGATTGATTTTTGCTGGCAAACAGCTAGAAGATGGACGCACCCTTTCCGATTACAAT 214114 Query 25179 ATTCAAAAAG 25188 || || |||| Sbjct 214113 ATCCAGAAAG 214104 >seq252 Length=802098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| || || ||||| || ||| | | ||||||||||| || || || |||||| | | Sbjct 443791 AGGAATACCTCCTGATCAGCAGAGATTAATTTTTGCCGGTAAGCAGTTGGAAGATAACAG 443850 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| | ||||| || || ||||||||||| || |||| || ||||| || ||||| Sbjct 443851 AACTCTTTCTGATTATAACATACAAAAAGAATCTACTTTACACTTGGTGCTCAGACTAAG 443910 Query 25220 AGGAGG 25225 |||||| Sbjct 443911 AGGAGG 443916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433240665043655