Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq1577 176 2e-39 seq1599 150 7e-32 seq3409 134 5e-27 seq3892 127 8e-25 seq4809 105 3e-18 seq5862 98.7 4e-16 >seq1577 Length=31499 Score = 176 bits (194), Expect = 2e-39 Identities = 237/327 (72%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 40696 TTCTTTTCGCACTCGATGAAGTATCGGCGTATCTGGCGGCCTTTTTCGTTACGCTCAACC 40755 ||||| || || ||||||||||| || || | ||| ||||||| ||||| ||||||||| Sbjct 21929 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 21988 Query 40756 ATCGCCAGTTCTTTGGCTGTGTCGAGAGTTAGGTGGTAGTCCTTGCTACGGCGATCACCT 40815 |||||||| ||||| ||||||| || || || |||||||||||||| | | ||| || Sbjct 21989 ATCGCCAGCTCTTTTGCTGTGTTCAGGGTGAGATGGTAGTCCTTGCTTCTTCTATCTCCA 22048 Query 40816 CCTCG---CCCTTTGGTTTGCCCATTTTGGCAAATCAAAATATAGTCCTGGCTTTCAACG 40872 ||||| |||| || |||| |||| || |||||| |||||| | |||| | | Sbjct 22049 CCTCGTGTATTTTTGATTCCCCCACTTTGATGAACCAAAATGTAGTCCGCGTTTTCGATG 22108 Query 40873 AATCCATATTCAGCAATGCGTTCTTTAACCCAGTGCGCGAACAT-TCTGCCCACACCAAG 40931 ||||| || || | || ||| | |||| ||| || || || | || ||| | || Sbjct 22109 AATCCGTACTCGGTAACGCGGTTCTTAATCCA-TGTTGAAAAATCACGGCGAACATCGAG 22167 Query 40932 AAAAGAGTGTAGATCACGAGCGTTAACTAGAAGAATTGTTTCGTTGTCGATAGTGCCGTT 40991 || || || | ||| || | | || ||| ||| ||||||| ||||||||||| Sbjct 22168 GAATTCATGCAGCTTACGCGCATCACACAGTAGAGTTGCTTCGTTGGAAATAGTGCCGTT 22227 Query 40992 GAATACGGGGATGAGTTGACTGGTCAT 41018 ||| |||||||| || ||| ||||||| Sbjct 22228 GAAAACGGGGATAAGCTGATTGGTCAT 22254 >seq1599 Length=30855 Score = 150 bits (166), Expect = 7e-32 Identities = 226/321 (70%), Gaps = 20/321 (6%) Strand=Plus/Minus Query 40698 CTTTTCGCACTCGATGAAGTATCGGCGTATCTGGCGGCCTTTTTCGTTACGCTCAACCAT 40757 |||||| ||||| |||||||| ||||| | ||| |||||||| ||||| |||| ||||| Sbjct 20322 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTGTCGTTGTGCTCCACCAT 20263 Query 40758 CGCCAGTTCTTTGGCTGTGTCGAGAGTTAGGTGGTAGTCCTTGCTACGGCGATCACCTCC 40817 |||||||||||||||||||| || || |||||||||||||| || | | | ||| Sbjct 20262 TGCCAGTTCTTTGGCTGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGC------CTCGTCC 20209 Query 40818 TCGCCCTTTGGTTTGCCCATTTTGGCAAATCAAAATATAGTCCTGGCTTTCAACGAATCC 40877 | ||| ||| || ||| ||| |||| || |||||||| |||||||||| || Sbjct 20208 GTGACCT---ATTTCCCGATTCTGGGAAATAGCTATGTAGTCCTGATTTTCAACGAAACC 20152 Query 40878 ATATTCAGCAATGCGTTCTTTAACCCAGTGCGCGAACATTCTGCCCACACCAAGAAAAGA 40937 | | || ||||| ||||| ||| ||| || ||| | |||| || Sbjct 20151 AAACTCCGCAATCCGTTCGGTAATCCA---CG--------TTGCAAAAGGCAAGGAATTC 20103 Query 40938 GTGTAGATCACGAGCGTTAACTAGAAGAATTGTTTCGTTGTCGATAGTGCCGTTGAATAC 40997 ||||| || || || | | || || | | |||||| ||||| || ||||| || Sbjct 20102 ATGTAGCTCGCGTGCATCACAAAGTAGGGTGGATTCGTTACTTATAGTTCCTTTGAAAAC 20043 Query 40998 GGGGATGAGTTGACTGGTCAT 41018 |||||||||||| | ||||| Sbjct 20042 GGGGATGAGTTGTGTTGTCAT 20022 >seq3409 Length=8325 Score = 134 bits (148), Expect = 5e-27 Identities = 303/450 (67%), Gaps = 9/450 (2%) Strand=Plus/Plus Query 6069 ATGACCGTGCCGTTTCACGGCGATTCTCTTTATGTGGTTAACCATAACGGCGAACCATAC 6128 || ||||| |||||||| || || | || ||||| |||||| ||||| ||||| || Sbjct 5128 ATCACCGTTCCGTTTCATGGAAATGCCCTGTATGTCGTTAACTGTAACGATGAACCCTAT 5187 Query 6129 GTTCCCATGAAACCTGTCGTTGCGGGGATGGGGCTGGCCTGGCAATCACAGTTGGCTAAG 6188 || ||| || || ||| ||| |||||| |||| | || ||| || |||| Sbjct 5188 ACCCCGATGCGCCCAATCATTGAGGGTATGGGGTTGGCATACCAGGGTCAGGCGGGTAAG 5247 Query 6189 TTAAGACAGCGTTTTGCGTCAACTA--TAACGGAAATCGTTATGGTTGCTGAGGATGGGA 6246 || | | || ||||| ||| | | ||||||| | || | | | | ||| Sbjct 5248 TTGAAATCTCGCTTTGC--CAAGGGGGTCATGGAAATCATGATCCCTACCCAAGGTGGCC 5305 Query 6247 AACGACGCAATATGGTGTCCCTGCCGCTTCGAAAACTTGCAGGCTGGTTACAAACCATCA 6306 || | || ||| | | || | || || ||| | || | |||| | | ||| Sbjct 5306 CACAA---AAAATGCTTTGTCTACAACTCCGCAAATTGGCTGCCTGGCTGGCCAGTATCC 5362 Query 6307 ATCCCAACAAAGTAAAACCCGAAATCCGCGGCAAGGTAATCCAGTATCAGGAAGAGTGTG 6366 | || || ||||| || || |||| |||| ||| || | ||||||||||| ||||| | Sbjct 5363 AGCCGAATAAAGTTAAGCCAGAAAGTCGCGACAAAGTGGTTCAGTATCAGGAGGAGTGCG 5422 Query 6367 ACGATGTTCTCTATGAATACTGGACGAAGGGTTTTGTCGTTAATCCCCGTCGAATG-AGT 6425 | || || ||||||||||||||||| || ||| || |||||||| | | | || Sbjct 5423 ATGACGTGCTCTATGAATACTGGACAAAAGGTCAGGTTACCAATCCCCG-CAAGCGCAGC 5481 Query 6426 GTGATGGAAGAACTCAATCAGGCTTGCGCTGACATGAAACGGGATAAAAACATTGCCAGT 6485 || ||| | ||||||||| |||||||| ||| | ||| ||| ||| | ||||||| Sbjct 5482 GTCATGCAGGAACTCAATGCCGCTTGCGCCGACTTAAAAACGGACAAAGCCGTTGCCAGC 5541 Query 6486 GTGTTTGCTACCGGGCTGAATGAGTGGAAA 6515 ||||||| || || |||| ||||||||| Sbjct 5542 GTGTTTGGCACGGGATTGAACGAGTGGAAA 5571 Score = 129 bits (142), Expect = 2e-25 Identities = 182/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 5501 AAGGCGCTGGCATGGGTGGAGAAAAACATCAAAGTGCCATTGAGCGAACCCCAGAAAGCG 5560 |||||||| | |||||||| ||| | |||||||| | | || | ||||||| Sbjct 3161 AAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACTCAGAAAGTC 3220 Query 5561 GGGATCGCGTCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTT 5620 || || || ||||| ||||||| || || ||||||||||| || ||| | || ||||| Sbjct 3221 GGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACCTCAACGTTC 3280 Query 5621 TATAAACGAATT-AATGCAGGTGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGAT 5679 || | |||| ||||| || |||| || || || || | | |||| | ||||| Sbjct 3281 TA-CCGCAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAAGCGCTGGAT 3339 Query 5680 TAAGGACGGTGGCAGAGACTGCCGTATTCGTTCAAACAACTGCTACGGTCAGGTATCCCG 5739 | |||||| |||| ||| |||||||| || | || ||||| ||||| ||| || | || Sbjct 3340 TTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCAGATAGCGCG 3399 Query 5740 TCGTGACCAGGAG 5752 |||||||||||| Sbjct 3400 GCGTGACCAGGAG 3412 Score = 123 bits (136), Expect = 1e-23 Identities = 129/164 (79%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 41008 TGACTGGTCATGATGACCTCCTTTGAAGTTTTAGTTAGCAATCACCAGTTAGTGGCTGGT 41067 ||||| | ||| | | ||||||| ||||| |||| | || |||||||||| |||||| Sbjct 1109 TGACTTGGCATAAAG-CCTCCTTACTAGTTT-AGTTT-CGATTACCAGTTAGTAGCTGGT 1053 Query 41068 GATCGGGTGTCAACTAGAGCCTTCAAAGATGCTCCGGGCATATTCCCCTTGCGGGTATTG 41127 |||| ||||||| ||| || ||| ||| |||||||||||||||||| |||||| Sbjct 1052 AGCCGGGCGTCAACT-GAGTCTAGTAAGCAACTCTGGGCATATTCCCCTTGCGAGTATTG 994 Query 41128 TATTACGCCTCTCCACCCGACCTTTGTACGGATGTGACTATGCC 41171 ||||||||||||||||||| |||| ||||||||| || ||| Sbjct 993 TATTACGCCTCTCCACCCGGCCTT----CGGATGTGATTACGCC 954 >seq3892 Length=6556 Score = 127 bits (140), Expect = 8e-25 Identities = 218/315 (69%), Gaps = 11/315 (3%) Strand=Plus/Minus Query 40696 TTCTTTTCGCACTCGATGAAGTATCGGCGTATCTGGCGGCCTTTTTCGTTACGCTCAACC 40755 ||||| || || ||||||||||| || || | ||| ||||||| ||||| ||||||||| Sbjct 3490 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 3431 Query 40756 ATCGCCAGTTCTTTGGCTGTGTCGAGAGTTAGGTGGTAGTCCTTGCTACGGCGATCACCT 40815 |||||||||||||| || |||||||| || || ||||||||||| || || || Sbjct 3430 ATCGCCAGTTCTTTAGCAGTGTCGAGGGTGAGCTGGTAGTCCTTTCTGCGACG------- 3378 Query 40816 CCTCGCCCTTTGGTTTGCCCATTTTGGC-AAATCAAAATATAGTCCTGGCTTTCAACGAA 40874 | || | || || ||| | | |||| ||| | || ||||| | || | || Sbjct 3377 -CCCGACAGTT--TTCGCCGAATCTGGCGAAAATACGATGTAGTCTAGATTTGCGGTAAA 3321 Query 40875 TCCATATTCAGCAATGCGTTCTTTAACCCAGTGCGCGAACATTCTGCCCACACCAAGAAA 40934 || || || | ||| || || || ||||| | || | ||| ||| | ||| Sbjct 3320 CCCGTACTCTGAAATTCGCTCACGAATCCAGTTGGAAAAGTCGCGGCCTACATTCAAAAA 3261 Query 40935 AGAGTGTAGATCACGAGCGTTAACTAGAAGAATTGTTTCGTTGTCGATAGTGCCGTTGAA 40994 || || ||||| ||||| ||| |||||||| | ||||| | || ||||| || || Sbjct 3260 AGTATGAAGATCGCGAGCATTACAAAGAAGAATGGAATCGTTTGCAATGGTGCCATTAAA 3201 Query 40995 TACGGGGATGAGTTG 41009 || |||||||| || Sbjct 3200 AACAGGGATGAGCTG 3186 >seq4809 Length=3389 Score = 105 bits (116), Expect = 3e-18 Identities = 244/363 (67%), Gaps = 10/363 (3%) Strand=Plus/Plus Query 56651 TCAAATCAAATACGCCAGCACACAACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTG 56710 |||||||| | || | || | |||||||| |||| ||| |||| | | ||| Sbjct 71 TCAAATCACACACCAGACCAGAGCACAAGGACACATGGCGAACCCCGCCCGAGGTCTTTC 130 Query 56711 ATGCACTGGATATTGAGTTTGGATTCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTC 56770 | || |||||| |||||||| |||| || ||| | || ||| | || | ||| | | Sbjct 131 AGGCGCTGGATGCGGAGTTTGGCTTCTACCTCGATGCCGCCGCGGACCACGACAATACCC 190 Query 56771 TGTGTGCTCACTGGCTAACTGAGGCC----GACGACGCGCTCAATTCTGAGTGGGTAAGC 56826 ||||| || || || |||| ||| || || || || | ||| ||| ||| Sbjct 191 TGTGTCGTC--TG--TATCTGACGCCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGC 246 Query 56827 CACGGTGCAATCTGGAATAACCCACCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCC 56886 ||| || |||| || || ||||||||||||||| | || ||||| || ||||| Sbjct 247 ACCGGCGCCATCTTCTGCAATCCCCCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCT 306 Query 56887 GCTGAGCAGTGCATACAACAGCGACAGACGGTAGTTATGCTTGTGCCAGAGGATATGTCA 56946 ||||||||| || | ||| | ||||| |||||||| |||| | ||||| || Sbjct 307 GCTGAGCAGAGCCGCAAGCAGAATAAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCG 366 Query 56947 GTCGGATGGTTCAGCA-AGGCTCTGGAGAGTGTTGACGAAGTTCGCATTATCACTGATGG 57005 ||||||||| ||| ||||| | | | ||||| || || ||| | ||||| || || Sbjct 367 ACGGGATGGTTC-GCACTGGCTCAGAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGG 425 Query 57006 ACG 57008 || Sbjct 426 GCG 428 >seq5862 Length=3465 Score = 98.7 bits (108), Expect = 4e-16 Identities = 228/339 (67%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 56675 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 56734 |||||||| |||| ||| |||| | | || | || |||||| |||||||| | Sbjct 23 ACAAGGACACATGGCGAACCCCGCACGAGGTCTTCCAGGCGCTGGATGCGGAGTTTGGCT 82 Query 56735 TCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTCTGTGTGCTCACTGGCTAACTGAGG 56794 ||| || ||| | || ||| | || | ||| | |||||| || || || |||| | Sbjct 83 TCTACCTCGATGCCGCCGCGGACCACGACAATACCCTGTGTCGTC--TG--TATCTGACG 138 Query 56795 CC----GACGACGCGCTCAATTCTGAGTGGGTAAGCCACGGTGCAATCTGGAATAACCCA 56850 || || || || || | ||| ||| ||| ||| || |||| || || Sbjct 139 CCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGCACCGGCGCCATCTTCTGCAATCCC 198 Query 56851 CCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGA 56910 ||||||||||||||| | || ||||| || ||||| ||||||||| || | ||| Sbjct 199 CCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCTGCTGAGCAGAGCCGCAAGCAGAAT 258 Query 56911 CAGACGGTAGTTATGCTTGTGCCAGAGGATATGTCAGTCGGATGGTTCAGCA-AGGCTCT 56969 | ||||| |||||||| |||| | ||||| || ||||||||| ||| |||| | Sbjct 259 AAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCGACGGGATGGTTC-GCACAGGCACA 317 Query 56970 GGAGAGTGTTGACGAAGTTCGCATTATCACTGATGGACG 57008 | | | ||||| || || ||| | ||||| || || || Sbjct 318 GAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGGGCG 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192602169958800