Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq1601 205 2e-48 >seq1601 Length=30922 Score = 205 bits (226), Expect = 2e-48 Identities = 376/547 (69%), Gaps = 3/547 (1%) Strand=Plus/Plus Query 21029 TGGATGGGTGGCAAGCGCCGCCTGGCTAAACACATCCTGCCAGAGTTCCCAGAGCACGAG 21088 ||||| || || || || || ||||| ||||| || | || ||||| | ||| Sbjct 8274 TGGATAGGCGGTAAACGGCGACTGGCAAAACAGATTTTACCGCGCTTCCCGGCGCATACC 8333 Query 21089 TGCTATGTGGAGCCGTTCTGTGGGGCCGCTGCCCTGTTTTTTATGAAGATGCCGACCAAG 21148 ||||| |||||||| || ||||| || || || || || ||||||||| | || | ||| Sbjct 8334 TGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTTACCCAGTAAG 8393 Query 21149 GTTGAAGTCATCAACGACGTGAACAGCGACCTGGTTAACCTGTACCGCGTGGTGCAGCAT 21208 | || || || ||||| | ||| |||| ||||| || || || || ||| || | || Sbjct 8394 GCGGAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTCTATCGGGTGCTGAAACAC 8453 Query 21209 CACCTCGAGGAGTTCGTCCGCCAGTTCAAATGGGCGCTTATCAGCCGCGAGATGT-TCAA 21267 || || || ||||| | |||||||| ||||||||||| ||||||| | ||||| |||| Sbjct 8454 CATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGCCGGGCGATGTATCAA 8513 Query 21268 GTGGCTGGACGATACGCCCGTCGAGACCCTGACCGATATTCAG-CGTGCTGCCCGGTTCT 21326 ||| | || |||||| ||||||| | ||||||| || || || ||| | |||| Sbjct 8514 -TGGTTAAACATTACGCCGACCGAGACCTTAACCGATAGGAAGCCGCGCGGCCTGTTTCT 8572 Query 21327 ATTACCTGCAGCAGATGGGCTTCGGCGCCAAGATTACCGGCCGCACCTTTGGCACGGCCA 21386 |||||||||| | || ||||||| || | ||| | |||||| |||| |||| Sbjct 8573 ATTACCTGCAAAAACAGGCGTTCGGCGGTAAAGTCGCCGAACACACCTTCGGCATTGCCA 8632 Query 21387 CCACTACGCCGCCAAAACTGAACCTGCTGCGCCTCGAGGAGACGCTAAGCCAGGCGCACC 21446 |||| | |||| ||||||||||| ||| | || ||| ||| | || || | Sbjct 8633 CCACCAGAGGGCCACGCCTGAACCTGCTACGCATGGAAGAGGAGCTGTCGCTCGCTCATC 8692 Query 21447 TACGCCTGAGCCGTGTTTACGTTGAGCACCTGGACTGGCAGGCGTGCATGGAAAAGTACG 21506 | || || || | |||| || | || ||| | ||||| | || | Sbjct 8693 TGCGATTGTCACGCACCACCATTGAACAAATCGATTGGTCAACCTGCATTGCCCGTTATG 8752 Query 21507 ACCGACCGCACACCCTGTTTTACCTCGACCCGCCGTACTGGCAGACCGAGGGCTACGGTG 21566 |||| |||||||| || |||||| ||||||||||| ||| || |||||||| || | Sbjct 8753 ACCGTCCGCACACGCTCTTTTACTGTGACCCGCCGTATTGGGGTACTGAGGGCTATGGCG 8812 Query 21567 TCGACTT 21573 | || || Sbjct 8813 TGGATTT 8819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122084820655446