Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq4892 168 2e-37 seq13965 156 1e-33 seq1599 80.6 7e-11 >seq4892 Length=4580 Score = 168 bits (186), Expect = 2e-37 Identities = 410/609 (67%), Gaps = 18/609 (3%) Strand=Plus/Plus Query 26211 GGTTCATCGAGGAATTCCGGGGAACGCGGCGCGGATCTTGAGGAAGAAGTATTCCTCGTC 26270 ||||||||| | | ||||||||||| || ||| || ||||||||||| | | || Sbjct 3970 GGTTCATCGCGCTTTACCGGGGAACGCTGCTTTGATTTTCAGGAAGAAGTAAGCGTTATC 4029 Query 26271 GCGGTACCCGTAAGCCCGACGTTTGATGACCTTGATGGTGTTGTTGATGCCTTCGACGAC 26330 ||||| || || ||| || || || || || || | ||||| || ||||| | || Sbjct 4030 CCGGTATCCATAGGCCATCCGCTTCATCACTTTTATCTTATTGTTCATCCCTTCCAACAC 4089 Query 26331 GCTGGTGTTGAGCGGGTGGC-GGCAGCGGGCCAGAATTCCAT-GCCAGTAGCCCTCCAGG 26388 |||||| || | | ||| | |||| | || | || ||| | || || || | ||| Sbjct 4090 GCTGGTATTCAACCTGTGTCTGGCA-CTCGCGATGATGCCACCGGCA-TACCCTTTCAGT 4147 Query 26389 CGCTGGGCGAACAGTTGCAAAGCGGCGATCCCGCTTTGCCGAGCCTGCTCAAACCATTGT 26448 || |||||| ||||||| || ||| ||||||| | ||| |||| |||| | Sbjct 4148 TTCTCGGCGAAGTGTTGCAACGCCTTGATTCCGCTTTCCTGAGACTGCCTGTACCAGCTT 4207 Query 26449 TCCCAGGCCTTTTGCGCCCA--GGCCGGTCTGCG-GTAAAACCAGAGCCGTTTCAACTCG 26505 ||||| | |||||| | | || | | ||| ||| || ||||| | | Sbjct 4208 ACCCAGCGTCTCTGCGCCTCTTGTTCACTCGGGGCGTA---CCACAGTTCTTTCAGCGCT 4264 Query 26506 TCGCGCAGCACGTAGACG-CATAACAGCGACTGATTGGCGGCCAGCAGCTCCTTCAGGTG 26564 || || |||| ||| || || |||||| || |||||| |||| | || | Sbjct 4265 GTTTTCATCAGCCAGACCACATT-CAACGGCTGATTCGCCTCCAGCAACTCCGTGAGCTT 4323 Query 26565 CACGGCCTGCTCTGGCTTCAGATTGTGGCGCTTGCGTAGCAACAGCCACCGGCTGGACTT 26624 || | ||| || ||| || | | | ||||| |||| |||||| |||||| || Sbjct 4324 TACCTCATGCCCTTCGGGCAGGTTTTCGGGGTTGCGCAGCAGCAGCCAGCGGCTGCGTTT 4383 Query 26625 CAGAACCTTCCGGGCC---GGCTTGTCATGCCGGAGTTGATTGGCCTGATCCACCCGCAC 26681 | |||| || | || || ||| ||||||||||||||||| || || || || Sbjct 4384 GATGACCTGACGCGATTTTGGGTTATCA---CGGAGTTGATTGGCCTGGTCGACGCGGAC 4440 Query 26682 CCGGTCGATCACCTCACGCCCATACTTGGCCACGACGTGGAACAAGTCGTAGACCACCTC 26741 ||||||||| ||||| || |||||||| ||||| || ||||||||||| |||||||| || Sbjct 4441 CCGGTCGATAACCTCCCGGCCATACTTTGCCACCACATGGAACAAGTCATAGACCACTTC 4500 Query 26742 GGCCTGCGGGCAATGCGCGTTGATCTCCAGTTCGTAGGCGGTCGTCATGTCGATTGCCAC 26801 ||||||||||| || ||| |||||| || | || || |||| || || || || Sbjct 4501 CGCCTGCGGGCAGTGATACCTGACCTCCAGGTCTAACGCCGTATTCATATCCATGGCGAC 4560 Query 26802 CGCCTCGAT 26810 | || ||| Sbjct 4561 AGACTGGAT 4569 >seq13965 Length=1093 Score = 156 bits (172), Expect = 1e-33 Identities = 416/618 (67%), Gaps = 26/618 (4%) Strand=Plus/Plus Query 14370 ATCGACCTGTCGCAGCTGCCGGCGCCGGCCGTGGTCGAAACGCTCGACTACGAAGCCATC 14429 || ||||||||||||||||| ||||| | |||| | ||||||| ||| | ||| Sbjct 303 ATTGACCTGTCGCAGCTGCCATCGCCGCAGATCATCGAGCCACTCGACTTCGAGACGATC 362 Query 14430 CTGGCCGAGCGGAAAGACTACTTTGTGTCGCTGCAC--CCCGCCGACCAGCGGGACGCCG 14487 || | || || ||| | || |||| || || || ||||||| || | | Sbjct 363 CTCGTTGA-CGTCAAGGCGGTGATGA-TCGCCGCCTTTCCTGCTGACCAGCAGGCATCGG 420 Query 14488 CGCGCGCCACGCTGGCGCTGGAATCCGAGCCGATCACCAAGCTCTTGCAGGAGAACGCCT 14547 |||| | ||| ||||||| ||||||||| ||| | | || |||| || |||| Sbjct 421 TTGCCGCCGCCCTGTCGCTGGAGTCCGAGCCGCTCAACGTGATCGCCCAGGCGATGGCCT 480 Query 14548 ACCGCGAGCTGGTGTGGCGCCAGCGCGTGAACGACGCGGCGCGTGGGGT-CATGCTGGCC 14606 ||||||| || ||| ||||| ||| | ||||| | ||| || | | ||||||| | Sbjct 481 ACCGCGAATTGCTGTTGCGCCGGCGAATCAACGAGGGGGC-CGCCGCCTGCATGCTGAGC 539 Query 14607 TTCGCCGAAGGGGAAGACCTGGAGCAGATTGCGGCGAACTTCAACGTGCAGCGTCTGACC 14666 ||||||||| |||||||| | | || || ||| || || |||| ||||| Sbjct 540 CACGCCGAAGGCACCGACCTGGACAACCTGGCCGCCAACCTCGACACCGAGCGCCTGACG 599 Query 14667 ATCACGCCGGCTGACACCACCACCGTGCCGCCGACGCCCGCCGTGATGGAGGGCGACGAC 14726 ||||| |||| | || ||| || |||| || |||||||| | ||||| Sbjct 600 ATCACCCCGG---AAACGGACAC-GT----CCGATGCG----GTGATGGAAAGTGACGAA 647 Query 14727 TCGCTGCGCGAGCGCGCACAGGAAGCGTTTGAAGGGCTGTCCGTGGCCGGCCCGACCAAG 14786 | |||||| |||||| || ||||| || || || ||||||||||||| | | Sbjct 648 GCCCTGCGCCTGCGCGCGCAATCCGCGTTCGAGGGCATGAGCGTGGCCGGCCCGTCGGCG 707 Query 14787 GCCTACGAGCAGTTCGCGCGCTCGGCTGACGGCCGGGTGGCGGACGCGCGCGCGATCAGC 14846 || || || | || | ||| || |||| ||| || ||||| | || | |||| Sbjct 708 GCGTATGAATATTTTACCCGCAGCGCCAGCGGCAAGGTTGCCGACGCCAGGGCAACCAGC 767 Query 14847 CCGGCCGGCGCGGAGGTGGTGGTCTCGGTGCTGTCGCACCTGA--ACGACGGC-GCGGCC 14903 ||||| |||||||||||| || | | |||||| ||| || ||||||| || | Sbjct 768 CCGGCACCGGCGGAGGTGGTGATCGCCATCCTGTCG-ACC-GACGGCGACGGCATCGCCT 825 Query 14904 GACGAGAGCCTGCTGGCGGCTGT-ACGCACCGCGTTGAGCGATGACGATACCCGGCCGCT 14962 | |||| |||||||| || || ||| ||||| | | |||||| || ||| ||||| Sbjct 826 CGCCAGAG-CTGCTGGCCGCCGTGACG-GCCGCGGTTAACGATGAAGAAGTCCGACCGCT 883 Query 14963 CGGCGACCGCCTGACGGT 14980 ||||||||| ||||||| Sbjct 884 GGGCGACCGCGTGACGGT 901 >seq1599 Length=30855 Score = 80.6 bits (88), Expect = 7e-11 Identities = 172/257 (67%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 23029 TTGCGGTCGCGGCCTACCTGATCTACCGGTACTGGGAGCCGATCAGCGCCTTCTTCTCGG 23088 |||| |||| || | |||||| || || ||||||| || || ||||||| | | | Sbjct 30855 TTGCTGTCGGCGCTTTCCTGATTTATCGCTACTGGGGGCTCATTAGCGCCTGGTGCAAAG 30796 Query 23089 GGCTGTGGCAGCAGGTGAAGACGGCGTTCGACGGCGGCATCGCCGGTGTGTCCGCACTGA 23148 | ||| | | | || |||||| ||||||||||| || || | || |||| Sbjct 30795 CCCGCTGGGCGGATATCAAACAGGCGTTTTCCGGCGGCATCGGTGGCGTCGCGGCGCTGA 30736 Query 23149 TCCTGAACTGGTCGCCGGCGGGCCTGTTCTACGCCGCGCTCGCGCCGGTGTTGCAGTGGT 23208 | | ||||||||||||| ||| |||||||| ||| ||||| ||| ||| | | Sbjct 30735 TTATCAACTGGTCGCCGGTGGGGCTGTTCTATAAGGCGTTCGCGGGGGTTATGCGCTATT 30676 Query 23209 TCGGGTTCGACGTGCCGGCCAAGTTCACCGAGTTCGGCGCCAACATCGTGCAGGGGTTGG 23268 | | || | || ||||| || ||||| ||||| |||| | | ||||| ||| Sbjct 30675 TTACTATTGAGTTACCCGCCAATTTTACCGATTTCGGTCGCAACCTGATTGAGGGGCTGG 30616 Query 23269 CCAACGGCATCCGCAGC 23285 || ||| || |||||| Sbjct 30615 TCAGCGGTATTCGCAGC 30599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123886066862868