Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_010237.1
Length=63395
Score E
Sequences producing significant alignments: (Bits) Value
seq1599 244 4e-60
seq3409 178 5e-40
seq3892 143 1e-29
seq4809 105 3e-18
seq5862 98.7 4e-16
seq1577 98.7 4e-16
seq6242 96.9 1e-15
>seq1599
Length=30855
Score = 244 bits (270), Expect = 4e-60
Identities = 252/329 (77%), Gaps = 13/329 (4%)
Strand=Plus/Minus
Query 62485 CTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACCAT 62544
|||||| ||||| |||||||| | ||| | ||| |||||||| ||||| |||| |||||
Sbjct 20322 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTGTCGTTGTGCTCCACCAT 20263
Query 62545 CGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGTCTTTTTTCCCTCGCCCATAACC 62604
||| |||||||||||| || ||||| ||||||||||| ||| | ||||| || | |||
Sbjct 20262 TGCCAGTTCTTTGGCTGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGCCTCGTCCGTGACC 20203
Query 62605 TATTTCCCGTTTCTGGGAAATAGCTATATAGTCCTGATTTTCAACGAATCCGTACTCTTC 62664
||||||||| ||||||||||||||||| |||||||||||||||||||| || |||| |
Sbjct 20202 TATTTCCCGATTCTGGGAAATAGCTATGTAGTCCTGATTTTCAACGAAACCAAACTCCGC 20143
Query 62665 AATACGTTCTGTAATCCACGATGCAAAGCGTTTACCTACTCCAAGAAAAGTATGTAAATC 62724
||| ||||| |||||||||| |||||| | |||| || ||||| ||
Sbjct 20142 AATCCGTTCGGTAATCCACGTTGCAAAAGG-----------CAAGGAATTCATGTAGCTC 20094
Query 62725 ACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTTGAATACGGGGATGCG 62784
|| |||| | || || |||| |||||| ||||| || ||||| ||||||||| |
Sbjct 20093 GCGTGCATCACAAAGTAGGGTGGATTCGTTACTTATAGTTCCTTTGAAAACGGGGATGAG 20034
Query 62785 TTGACTGGTCATGATGACCTCCT-TATTT 62812
||| | ||||| | || |||| |||||
Sbjct 20033 TTGTGTTGTCAT-TTTACGTCCTCTATTT 20006
>seq3409
Length=8325
Score = 178 bits (196), Expect = 5e-40
Identities = 270/382 (71%), Gaps = 2/382 (1%)
Strand=Plus/Plus
Query 27849 GCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGT 27908
|| || | ||| || | || |||||||| || ||| |||| | || ||||| |||||
Sbjct 3032 GCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 3091
Query 27909 AAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCCATT 27968
||||| || | |||||||||||| | | | || | | || | |||
Sbjct 3092 AAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCA 3151
Query 27969 GAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCC 28028
|| | | |||||||| | |||||||| ||| | ||||||||||| || || |
Sbjct 3152 GAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACT 3211
Query 28029 CAGAAAGCGGGGATCGCGTCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCG 28088
||||||| || || || ||||| ||||||| || || ||||||||||| || ||| |
Sbjct 3212 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 3271
Query 28089 TCGACGTTTTACAGACGAATT-AATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCG 28147
|| ||||| ||| | | |||| ||||| || |||| | ||||||||| ||| |||
Sbjct 3272 TCAACGTTCTACCG-CAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAA 3330
Query 28148 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCA 28207
| |||||| |||||| |||| ||| |||||||| || | || ||||||||||| ||
Sbjct 3331 GCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCA 3390
Query 28208 GGTATCCCGTCGTGACCAGGAG 28229
| || | || ||||||||||||
Sbjct 3391 GATAGCGCGGCGTGACCAGGAG 3412
Score = 143 bits (158), Expect = 1e-29
Identities = 132/164 (80%), Gaps = 10/164 (6%)
Strand=Plus/Minus
Query 62786 TGACTGGTCATGATGACCTCCTTATTTGTTTAGTTT--ATAACCGCCAGTTAGTAGCTGG 62843
||||| | ||| | | |||||||| | ||||||||| || ||| |||||||||||||
Sbjct 1109 TGACTTGGCATAAAG-CCTCCTTACTAGTTTAGTTTCGATTACC---AGTTAGTAGCTGG 1054
Query 62844 CGGTCGGGTGTCAACTGAGCCAAATAAGAAGCTCTGGGCATATTCCCCTTGCGGGTGTTG 62903
| |||| |||||||||| | | |||| | |||||||||||||||||||||| || |||
Sbjct 1053 TAGCCGGGCGTCAACTGAGTCTAGTAAGCAACTCTGGGCATATTCCCCTTGCGAGTATTG 994
Query 62904 TATTACGCCTCTCCACCCGACCTTTGTACGGATGTAACTATGCC 62947
||||||||||||||||||| |||| ||||||| | || |||
Sbjct 993 TATTACGCCTCTCCACCCGGCCTT----CGGATGTGATTACGCC 954
>seq3892
Length=6556
Score = 143 bits (158), Expect = 1e-29
Identities = 221/307 (72%), Gaps = 14/307 (5%)
Strand=Plus/Minus
Query 62483 TTCTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACC 62542
||||| || || ||||||||||| | || | ||| ||||||| ||||| ||||| |||
Sbjct 3490 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 3431
Query 62543 ATCGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGTCTTTTTTCCCTCGCCCATAA 62602
|||||| |||||| || || |||||||| || |||||||| ||| | | ||||| |
Sbjct 3430 ATCGCCAGTTCTTTAGCAGTGTCGAGGGTGAGCTGGTAGTCCTTTCTGCGACGCCC--GA 3373
Query 62603 CCTATTTC-CCGTTTCTGG-GAAATAGCTATATAGTCCTGATTTTCAACGAATCCGTACT 62660
| |||| ||| ||||| |||| | || ||||| ||||| | || |||||||
Sbjct 3372 CAGTTTTCGCCGAATCTGGCGAAAATACGATGTAGTCTAGATTTGCGGTAAACCCGTACT 3313
Query 62661 CTTCAATACGTTCTGTAATCCACGATGCAAA----GCGTTTACCTAC-TCCAAGAAAAGT 62715
|| ||| || || |||||| | || ||| ||| ||||| | ||| ||||||
Sbjct 3312 CTGAAATTCGCTCACGAATCCA-GTTGGAAAAGTCGCG---GCCTACATTCAA-AAAAGT 3258
Query 62716 ATGTAAATCACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTTGAATAC 62775
||| | ||| || |||||| |||||| ||| ||||| || || ||||| || || ||
Sbjct 3257 ATGAAGATCGCGAGCATTACAAAGAAGAATGGAATCGTTTGCAATGGTGCCATTAAAAAC 3198
Query 62776 GGGGATG 62782
||||||
Sbjct 3197 AGGGATG 3191
>seq4809
Length=3389
Score = 105 bits (116), Expect = 3e-18
Identities = 244/363 (67%), Gaps = 10/363 (3%)
Strand=Plus/Plus
Query 18709 TCAAATCAAATACGCCAGCACACGACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTG 18768
|||||||| | || | || | |||||||| |||| ||| |||| | | |||
Sbjct 71 TCAAATCACACACCAGACCAGAGCACAAGGACACATGGCGAACCCCGCCCGAGGTCTTTC 130
Query 18769 ATGCACTGGATATTGAGTTTGGATTCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTC 18828
| || |||||| |||||||| |||| || ||| | || ||| | || | ||| | |
Sbjct 131 AGGCGCTGGATGCGGAGTTTGGCTTCTACCTCGATGCCGCCGCGGACCACGACAATACCC 190
Query 18829 TGTGCGCTCACTGGCTAACTGAGGCC----GACGACGCGCTCAATTCTGAGTGGGTAAGC 18884
|||| || || || |||| ||| || || || || | ||| ||| |||
Sbjct 191 TGTGTCGTC--TG--TATCTGACGCCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGC 246
Query 18885 CACGGTGCAATCTGGAATAACCCACCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCC 18944
||| || |||| || || ||||||||||||||| | || ||||| || |||||
Sbjct 247 ACCGGCGCCATCTTCTGCAATCCCCCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCT 306
Query 18945 GCTGAGCAGTGCATACAACAGCGACAGACGGTAGTTATGCTTGTGCCAGAGGATATGTCA 19004
||||||||| || | ||| | ||||| |||||||| |||| | ||||| ||
Sbjct 307 GCTGAGCAGAGCCGCAAGCAGAATAAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCG 366
Query 19005 GTCGGATGGTTCAGCA-AGGCTCTGGAGAGTGTTGACGAAGTTCGCATCATCACTGATGG 19063
||||||||| ||| ||||| | | | ||||| || || ||| ||||||| || ||
Sbjct 367 ACGGGATGGTTC-GCACTGGCTCAGAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGG 425
Query 19064 ACG 19066
||
Sbjct 426 GCG 428
>seq5862
Length=3465
Score = 98.7 bits (108), Expect = 4e-16
Identities = 228/339 (67%), Gaps = 10/339 (3%)
Strand=Plus/Plus
Query 18733 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 18792
|||||||| |||| ||| |||| | | || | || |||||| |||||||| |
Sbjct 23 ACAAGGACACATGGCGAACCCCGCACGAGGTCTTCCAGGCGCTGGATGCGGAGTTTGGCT 82
Query 18793 TCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTCTGTGCGCTCACTGGCTAACTGAGG 18852
||| || ||| | || ||| | || | ||| | ||||| || || || |||| |
Sbjct 83 TCTACCTCGATGCCGCCGCGGACCACGACAATACCCTGTGTCGTC--TG--TATCTGACG 138
Query 18853 CC----GACGACGCGCTCAATTCTGAGTGGGTAAGCCACGGTGCAATCTGGAATAACCCA 18908
|| || || || || | ||| ||| ||| ||| || |||| || ||
Sbjct 139 CCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGCACCGGCGCCATCTTCTGCAATCCC 198
Query 18909 CCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGA 18968
||||||||||||||| | || ||||| || ||||| ||||||||| || | |||
Sbjct 199 CCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCTGCTGAGCAGAGCCGCAAGCAGAAT 258
Query 18969 CAGACGGTAGTTATGCTTGTGCCAGAGGATATGTCAGTCGGATGGTTCAGCA-AGGCTCT 19027
| ||||| |||||||| |||| | ||||| || ||||||||| ||| |||| |
Sbjct 259 AAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCGACGGGATGGTTC-GCACAGGCACA 317
Query 19028 GGAGAGTGTTGACGAAGTTCGCATCATCACTGATGGACG 19066
| | | ||||| || || ||| ||||||| || || ||
Sbjct 318 GAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGGGCG 356
>seq1577
Length=31499
Score = 98.7 bits (108), Expect = 4e-16
Identities = 219/327 (67%), Gaps = 14/327 (4%)
Strand=Plus/Plus
Query 62483 TTCTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACC 62542
||||| || || ||||||||||| | || | ||| ||||||| ||||| ||||| |||
Sbjct 21929 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 21988
Query 62543 ATCGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGT-CTTTTTTC----------- 62590
|||||| ||||| ||||| | ||||| || ||||||| ||| |||
Sbjct 21989 ATCGCCAGCTCTTTTGCTGTGTTCAGGGTGAGATGGTAGTCCTTGCTTCTTCTATCTCCA 22048
Query 62591 CCTCGCCCATAACCTATTTCCCGTTTCTGGGAAATAGCTATATAGTCCTGATTTTCAACG 62650
||||| || ||| ||| | || || || |||||| ||||| | |
Sbjct 22049 CCTCGTGTATTTTTGATTCCCCCACTTTGATGAACCAAAATGTAGTCCGCGTTTTCGATG 22108
Query 62651 AATCCGTACTCTTCAATAC-GTTCTGTAATCCACGATGCAAAGCGTTTACCTACTCCAAG 62709
||||||||||| || | ||||| ||||||| | || ||| | || | ||
Sbjct 22109 AATCCGTACTCGGTAACGCGGTTCT-TAATCCATGTTGAAAAATCACGGCGAACATCGAG 22167
Query 62710 AAAAGTATGTAAATCACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTT 62769
|| ||| | | ||| |||| | || ||||| | |||||||| |||||||||||
Sbjct 22168 GAATTCATGCAGCTTACGCGCATCACACAGTAGAGTTGCTTCGTTGGAAATAGTGCCGTT 22227
Query 62770 GAATACGGGGATGCGTTGACTGGTCAT 62796
||| |||||||| | ||| |||||||
Sbjct 22228 GAAAACGGGGATAAGCTGATTGGTCAT 22254
>seq6242
Length=2873
Score = 96.9 bits (106), Expect = 1e-15
Identities = 170/246 (69%), Gaps = 9/246 (4%)
Strand=Plus/Minus
Query 20552 GGGGTGATTCAACTTCCTTCAATGCAAAAAGTTGAAAATAAACAAACAATTAGCCCTAAC 20611
|| || ||||||||||| |||||| | |||||||| ||||||||| | ||||| |||
Sbjct 564 GGAGTAATTCAACTTCCCTCAATGGAGAAAGTTGAGAATAAACAATAGAATAGCCACAAC 505
Query 20612 AAATTCACAAGCGTGTATATATTCGAAGGCGAACAAGGTGAGCGAGACAGCATTATTGTC 20671
|| | | || || || || ||||||||| |||| |||||||| |||||
Sbjct 504 CGTTTTATGGAGGCTTACCATTTTGAGGGTGAACAAGGTAAGCGTGACAGCATCATTGTT 445
Query 20672 GTCGCTCAGTTGTCGCCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCG-- 20729
||||| || | || || ||||| ||||| | | || || || |||| ||||| |
Sbjct 444 GTCGCCCAACTTTCCCCCGAATTTACCGCCAGATTAGTAGATCGTTGGCAGGAACTGGAA 385
Query 20730 AAGGGGCAACCGCGAAAA-----TACCACAAACCTTTTCTGAGGCATTGCGCCTTGCGGC 20784
|| |||| |||||| |||| |||||||| || || ||||| || || ||
Sbjct 384 AATACTCAAC--CGAAAATCCGGTACCTCAAACCTTCTCAGAAGCATTAATGCTCGCCGC 327
Query 20785 CGACCT 20790
||| ||
Sbjct 326 CGAACT 321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 202698338991292
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