Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq1599 244 4e-60 seq3409 178 5e-40 seq3892 143 1e-29 seq4809 105 3e-18 seq5862 98.7 4e-16 seq1577 98.7 4e-16 seq6242 96.9 1e-15 >seq1599 Length=30855 Score = 244 bits (270), Expect = 4e-60 Identities = 252/329 (77%), Gaps = 13/329 (4%) Strand=Plus/Minus Query 62485 CTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACCAT 62544 |||||| ||||| |||||||| | ||| | ||| |||||||| ||||| |||| ||||| Sbjct 20322 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTGTCGTTGTGCTCCACCAT 20263 Query 62545 CGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGTCTTTTTTCCCTCGCCCATAACC 62604 ||| |||||||||||| || ||||| ||||||||||| ||| | ||||| || | ||| Sbjct 20262 TGCCAGTTCTTTGGCTGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGCCTCGTCCGTGACC 20203 Query 62605 TATTTCCCGTTTCTGGGAAATAGCTATATAGTCCTGATTTTCAACGAATCCGTACTCTTC 62664 ||||||||| ||||||||||||||||| |||||||||||||||||||| || |||| | Sbjct 20202 TATTTCCCGATTCTGGGAAATAGCTATGTAGTCCTGATTTTCAACGAAACCAAACTCCGC 20143 Query 62665 AATACGTTCTGTAATCCACGATGCAAAGCGTTTACCTACTCCAAGAAAAGTATGTAAATC 62724 ||| ||||| |||||||||| |||||| | |||| || ||||| || Sbjct 20142 AATCCGTTCGGTAATCCACGTTGCAAAAGG-----------CAAGGAATTCATGTAGCTC 20094 Query 62725 ACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTTGAATACGGGGATGCG 62784 || |||| | || || |||| |||||| ||||| || ||||| ||||||||| | Sbjct 20093 GCGTGCATCACAAAGTAGGGTGGATTCGTTACTTATAGTTCCTTTGAAAACGGGGATGAG 20034 Query 62785 TTGACTGGTCATGATGACCTCCT-TATTT 62812 ||| | ||||| | || |||| ||||| Sbjct 20033 TTGTGTTGTCAT-TTTACGTCCTCTATTT 20006 >seq3409 Length=8325 Score = 178 bits (196), Expect = 5e-40 Identities = 270/382 (71%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 27849 GCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGT 27908 || || | ||| || | || |||||||| || ||| |||| | || ||||| ||||| Sbjct 3032 GCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 3091 Query 27909 AAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCCATT 27968 ||||| || | |||||||||||| | | | || | | || | ||| Sbjct 3092 AAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCA 3151 Query 27969 GAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCC 28028 || | | |||||||| | |||||||| ||| | ||||||||||| || || | Sbjct 3152 GAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACT 3211 Query 28029 CAGAAAGCGGGGATCGCGTCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCG 28088 ||||||| || || || ||||| ||||||| || || ||||||||||| || ||| | Sbjct 3212 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 3271 Query 28089 TCGACGTTTTACAGACGAATT-AATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCG 28147 || ||||| ||| | | |||| ||||| || |||| | ||||||||| ||| ||| Sbjct 3272 TCAACGTTCTACCG-CAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAA 3330 Query 28148 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCA 28207 | |||||| |||||| |||| ||| |||||||| || | || ||||||||||| || Sbjct 3331 GCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCA 3390 Query 28208 GGTATCCCGTCGTGACCAGGAG 28229 | || | || |||||||||||| Sbjct 3391 GATAGCGCGGCGTGACCAGGAG 3412 Score = 143 bits (158), Expect = 1e-29 Identities = 132/164 (80%), Gaps = 10/164 (6%) Strand=Plus/Minus Query 62786 TGACTGGTCATGATGACCTCCTTATTTGTTTAGTTT--ATAACCGCCAGTTAGTAGCTGG 62843 ||||| | ||| | | |||||||| | ||||||||| || ||| ||||||||||||| Sbjct 1109 TGACTTGGCATAAAG-CCTCCTTACTAGTTTAGTTTCGATTACC---AGTTAGTAGCTGG 1054 Query 62844 CGGTCGGGTGTCAACTGAGCCAAATAAGAAGCTCTGGGCATATTCCCCTTGCGGGTGTTG 62903 | |||| |||||||||| | | |||| | |||||||||||||||||||||| || ||| Sbjct 1053 TAGCCGGGCGTCAACTGAGTCTAGTAAGCAACTCTGGGCATATTCCCCTTGCGAGTATTG 994 Query 62904 TATTACGCCTCTCCACCCGACCTTTGTACGGATGTAACTATGCC 62947 ||||||||||||||||||| |||| ||||||| | || ||| Sbjct 993 TATTACGCCTCTCCACCCGGCCTT----CGGATGTGATTACGCC 954 >seq3892 Length=6556 Score = 143 bits (158), Expect = 1e-29 Identities = 221/307 (72%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 62483 TTCTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACC 62542 ||||| || || ||||||||||| | || | ||| ||||||| ||||| ||||| ||| Sbjct 3490 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 3431 Query 62543 ATCGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGTCTTTTTTCCCTCGCCCATAA 62602 |||||| |||||| || || |||||||| || |||||||| ||| | | ||||| | Sbjct 3430 ATCGCCAGTTCTTTAGCAGTGTCGAGGGTGAGCTGGTAGTCCTTTCTGCGACGCCC--GA 3373 Query 62603 CCTATTTC-CCGTTTCTGG-GAAATAGCTATATAGTCCTGATTTTCAACGAATCCGTACT 62660 | |||| ||| ||||| |||| | || ||||| ||||| | || ||||||| Sbjct 3372 CAGTTTTCGCCGAATCTGGCGAAAATACGATGTAGTCTAGATTTGCGGTAAACCCGTACT 3313 Query 62661 CTTCAATACGTTCTGTAATCCACGATGCAAA----GCGTTTACCTAC-TCCAAGAAAAGT 62715 || ||| || || |||||| | || ||| ||| ||||| | ||| |||||| Sbjct 3312 CTGAAATTCGCTCACGAATCCA-GTTGGAAAAGTCGCG---GCCTACATTCAA-AAAAGT 3258 Query 62716 ATGTAAATCACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTTGAATAC 62775 ||| | ||| || |||||| |||||| ||| ||||| || || ||||| || || || Sbjct 3257 ATGAAGATCGCGAGCATTACAAAGAAGAATGGAATCGTTTGCAATGGTGCCATTAAAAAC 3198 Query 62776 GGGGATG 62782 |||||| Sbjct 3197 AGGGATG 3191 >seq4809 Length=3389 Score = 105 bits (116), Expect = 3e-18 Identities = 244/363 (67%), Gaps = 10/363 (3%) Strand=Plus/Plus Query 18709 TCAAATCAAATACGCCAGCACACGACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTG 18768 |||||||| | || | || | |||||||| |||| ||| |||| | | ||| Sbjct 71 TCAAATCACACACCAGACCAGAGCACAAGGACACATGGCGAACCCCGCCCGAGGTCTTTC 130 Query 18769 ATGCACTGGATATTGAGTTTGGATTCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTC 18828 | || |||||| |||||||| |||| || ||| | || ||| | || | ||| | | Sbjct 131 AGGCGCTGGATGCGGAGTTTGGCTTCTACCTCGATGCCGCCGCGGACCACGACAATACCC 190 Query 18829 TGTGCGCTCACTGGCTAACTGAGGCC----GACGACGCGCTCAATTCTGAGTGGGTAAGC 18884 |||| || || || |||| ||| || || || || | ||| ||| ||| Sbjct 191 TGTGTCGTC--TG--TATCTGACGCCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGC 246 Query 18885 CACGGTGCAATCTGGAATAACCCACCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCC 18944 ||| || |||| || || ||||||||||||||| | || ||||| || ||||| Sbjct 247 ACCGGCGCCATCTTCTGCAATCCCCCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCT 306 Query 18945 GCTGAGCAGTGCATACAACAGCGACAGACGGTAGTTATGCTTGTGCCAGAGGATATGTCA 19004 ||||||||| || | ||| | ||||| |||||||| |||| | ||||| || Sbjct 307 GCTGAGCAGAGCCGCAAGCAGAATAAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCG 366 Query 19005 GTCGGATGGTTCAGCA-AGGCTCTGGAGAGTGTTGACGAAGTTCGCATCATCACTGATGG 19063 ||||||||| ||| ||||| | | | ||||| || || ||| ||||||| || || Sbjct 367 ACGGGATGGTTC-GCACTGGCTCAGAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGG 425 Query 19064 ACG 19066 || Sbjct 426 GCG 428 >seq5862 Length=3465 Score = 98.7 bits (108), Expect = 4e-16 Identities = 228/339 (67%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 18733 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 18792 |||||||| |||| ||| |||| | | || | || |||||| |||||||| | Sbjct 23 ACAAGGACACATGGCGAACCCCGCACGAGGTCTTCCAGGCGCTGGATGCGGAGTTTGGCT 82 Query 18793 TCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTCTGTGCGCTCACTGGCTAACTGAGG 18852 ||| || ||| | || ||| | || | ||| | ||||| || || || |||| | Sbjct 83 TCTACCTCGATGCCGCCGCGGACCACGACAATACCCTGTGTCGTC--TG--TATCTGACG 138 Query 18853 CC----GACGACGCGCTCAATTCTGAGTGGGTAAGCCACGGTGCAATCTGGAATAACCCA 18908 || || || || || | ||| ||| ||| ||| || |||| || || Sbjct 139 CCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGCACCGGCGCCATCTTCTGCAATCCC 198 Query 18909 CCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGA 18968 ||||||||||||||| | || ||||| || ||||| ||||||||| || | ||| Sbjct 199 CCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCTGCTGAGCAGAGCCGCAAGCAGAAT 258 Query 18969 CAGACGGTAGTTATGCTTGTGCCAGAGGATATGTCAGTCGGATGGTTCAGCA-AGGCTCT 19027 | ||||| |||||||| |||| | ||||| || ||||||||| ||| |||| | Sbjct 259 AAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCGACGGGATGGTTC-GCACAGGCACA 317 Query 19028 GGAGAGTGTTGACGAAGTTCGCATCATCACTGATGGACG 19066 | | | ||||| || || ||| ||||||| || || || Sbjct 318 GAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGGGCG 356 >seq1577 Length=31499 Score = 98.7 bits (108), Expect = 4e-16 Identities = 219/327 (67%), Gaps = 14/327 (4%) Strand=Plus/Plus Query 62483 TTCTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACC 62542 ||||| || || ||||||||||| | || | ||| ||||||| ||||| ||||| ||| Sbjct 21929 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 21988 Query 62543 ATCGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGT-CTTTTTTC----------- 62590 |||||| ||||| ||||| | ||||| || ||||||| ||| ||| Sbjct 21989 ATCGCCAGCTCTTTTGCTGTGTTCAGGGTGAGATGGTAGTCCTTGCTTCTTCTATCTCCA 22048 Query 62591 CCTCGCCCATAACCTATTTCCCGTTTCTGGGAAATAGCTATATAGTCCTGATTTTCAACG 62650 ||||| || ||| ||| | || || || |||||| ||||| | | Sbjct 22049 CCTCGTGTATTTTTGATTCCCCCACTTTGATGAACCAAAATGTAGTCCGCGTTTTCGATG 22108 Query 62651 AATCCGTACTCTTCAATAC-GTTCTGTAATCCACGATGCAAAGCGTTTACCTACTCCAAG 62709 ||||||||||| || | ||||| ||||||| | || ||| | || | || Sbjct 22109 AATCCGTACTCGGTAACGCGGTTCT-TAATCCATGTTGAAAAATCACGGCGAACATCGAG 22167 Query 62710 AAAAGTATGTAAATCACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTT 62769 || ||| | | ||| |||| | || ||||| | |||||||| ||||||||||| Sbjct 22168 GAATTCATGCAGCTTACGCGCATCACACAGTAGAGTTGCTTCGTTGGAAATAGTGCCGTT 22227 Query 62770 GAATACGGGGATGCGTTGACTGGTCAT 62796 ||| |||||||| | ||| ||||||| Sbjct 22228 GAAAACGGGGATAAGCTGATTGGTCAT 22254 >seq6242 Length=2873 Score = 96.9 bits (106), Expect = 1e-15 Identities = 170/246 (69%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 20552 GGGGTGATTCAACTTCCTTCAATGCAAAAAGTTGAAAATAAACAAACAATTAGCCCTAAC 20611 || || ||||||||||| |||||| | |||||||| ||||||||| | ||||| ||| Sbjct 564 GGAGTAATTCAACTTCCCTCAATGGAGAAAGTTGAGAATAAACAATAGAATAGCCACAAC 505 Query 20612 AAATTCACAAGCGTGTATATATTCGAAGGCGAACAAGGTGAGCGAGACAGCATTATTGTC 20671 || | | || || || || ||||||||| |||| |||||||| ||||| Sbjct 504 CGTTTTATGGAGGCTTACCATTTTGAGGGTGAACAAGGTAAGCGTGACAGCATCATTGTT 445 Query 20672 GTCGCTCAGTTGTCGCCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCG-- 20729 ||||| || | || || ||||| ||||| | | || || || |||| ||||| | Sbjct 444 GTCGCCCAACTTTCCCCCGAATTTACCGCCAGATTAGTAGATCGTTGGCAGGAACTGGAA 385 Query 20730 AAGGGGCAACCGCGAAAA-----TACCACAAACCTTTTCTGAGGCATTGCGCCTTGCGGC 20784 || |||| |||||| |||| |||||||| || || ||||| || || || Sbjct 384 AATACTCAAC--CGAAAATCCGGTACCTCAAACCTTCTCAGAAGCATTAATGCTCGCCGC 327 Query 20785 CGACCT 20790 ||| || Sbjct 326 CGAACT 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202698338991292