Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq21 107 2e-18 seq349 102 9e-17 seq75 102 9e-17 seq57 102 9e-17 seq125 98.7 1e-15 seq42 96.9 4e-15 seq1116 86.0 7e-12 >seq21 Length=2976947 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1416670 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1416611 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 1416610 TTACCACTATACTACCGAGGACTG 1416587 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1416950 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1416891 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 1416890 TTACCACTATACTACCGAGGA 1416870 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1417224 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1417165 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 1417164 TTACCACTATACTACCGAGGA 1417144 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1417498 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1417439 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 1417438 TTACCACTATACTACCGAGGA 1417418 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| || |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1417773 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1417714 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 1417713 TTACCACTATACTACCGAGGA 1417693 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| | | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1418074 AAAACTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1418015 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 1418014 TTACCACTATACTACCGAGGA 1417994 >seq349 Length=551398 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 349540 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 349599 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 349600 TGACCACTATACTACCGAGGA 349620 >seq75 Length=1867704 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 935338 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 935397 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 935398 TGACCACTATACTACCGAGGA 935418 >seq57 Length=2082711 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | || | |||||||| | ||| ||||||||||||||||||||||| Sbjct 1619524 ACCCCCTCTGAGCCGAAGAACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGA 1619583 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| |||||| ||||| || || || |||||||| || | ||| Sbjct 1619584 TAGAGTTCGGCCATCTTCTAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGG 1619643 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || || ||| |||||| || | || | | || || || || || Sbjct 1619644 AATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCAGACGGCTCAAC 1619703 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || || ||||| || || || || || ||||| ||||||||| Sbjct 1619704 TTCAAGAGTAATAGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCATT 1619752 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | || ||||| | ||| ||||||||||||||||||||||| Sbjct 1620436 ACCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGA 1620495 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || | |||||| ||||| || || || |||||||| || | ||| Sbjct 1620496 TAGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGG 1620555 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| ||| |||||| ||| | | | | || || | ||||| Sbjct 1620556 GATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCAATAGTATCAGAGGGCTCCAC 1620615 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || || ||||| || || || || || ||||| ||||||||| Sbjct 1620616 TTCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCATT 1620664 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | || ||||| | ||| ||||||||||||||||||||||| Sbjct 1619068 ACCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGA 1619127 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || | |||||| ||||| || || || |||||||| || | ||| Sbjct 1619128 TAGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGG 1619187 Query 42101 CACGCTCTCCTTGTCCATGATTTT 42124 | | ||||| ||| |||||| Sbjct 1619188 GATTCCTTCCTTATCCTGGATTTT 1619211 >seq125 Length=1349911 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 573706 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 573647 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 573646 TACTACCGAGGATT 573633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 572663 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 572722 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 572723 TACTACCGAGGA 572734 >seq42 Length=2339945 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2128084 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 2128025 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 2128024 ATACTACCGAGGA 2128012 >seq1116 Length=48232 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 |||| |||| |||| | ||||||| || |||||||||||||||||||||| ||||| | Sbjct 32670 AATTGGCTCCCCGGCGGGGAATCGAATCCCGGTCTCCCGCGTGACAGGCGGAGATACTGA 32611 Query 57061 CCACTATACTAC 57072 |||||||||||| Sbjct 32610 CCACTATACTAC 32599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543100511124080