Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_010342.1 Length=39245 Score E Sequences producing significant alignments: (Bits) Value seq1601 201 3e-47 >seq1601 Length=30922 Score = 201 bits (222), Expect = 3e-47 Identities = 371/540 (69%), Gaps = 12/540 (2%) Strand=Plus/Plus Query 21297 TGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTGACCACCAG 21356 ||||| ||||| || || || ||||| ||||| || | ||| |||||| | || Sbjct 8274 TGGATAGGCGGTAAACGGCGACTGGCAAAACAGATTTTACCGCGCTTCCCGGCGCATACC 8333 Query 21357 TGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAGCAACCCAGCAAA 21416 |||||||| ||||| || |||| |||||||| ||||| |||||| |||||| || Sbjct 8334 TGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTTACCCAGTAAG 8393 Query 21417 GTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGGTGGTGCAGCAC 21476 | ||||||||| ||||| | |||| |||| |||||||| | || |||||| || | ||| Sbjct 8394 GCGGAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTCTATCGGGTGCTGAAACAC 8453 Query 21477 CACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGAGATGTTCGCG 21536 || ||||| ||||| |||||||||| || |||||||||||| || | ||||| Sbjct 8454 CATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGCCGGGCGATGTATCAA 8513 Query 21537 TGGGAGAAGCTCAAGCACACCGACACGCTAACGGATATCCAG-CGGGCCGCGCGGTTCTA 21595 ||| || | | || ||||| || |||| |||| || || || || | ||||| Sbjct 8514 TGGTTAAACATTACGCCGACCGAGACCTTAACCGATAGGAAGCCGCGCGGCCTGTTTCTA 8573 Query 21596 CTACCTGCAGCAGCAGGGGTTTGGCGGGAAGGTC----AACTCGAACTTTGGCATCTCGA 21651 |||||||| | |||| ||| ||||| || ||| ||| | | ||| ||||| | | Sbjct 8574 TTACCTGCAAAAACAGGCGTTCGGCGGTAAAGTCGCCGAACAC-ACCTTCGGCATTGCCA 8632 Query 21652 CCACGTCTGGCCCTGGGCTTAACCTGCTGCGGATCGAGGAGAACCTCAGCCAGGCGCACT 21711 |||| || || | || |||||||| || || || ||| | || | || || Sbjct 8633 CCACCAGAGGGCCACGCCTGAACCTGCTACGCATGGAAGAGGAGCTGTCGCTCGCTCATC 8692 Query 21712 TGCGGCTCTCGCGCGTGTTCGTTGAGAACATGGACTGGAAAGCGGTCATGAAGCGCTACG 21771 |||| | || ||| | |||| | || || ||| | | ||| || || | Sbjct 8693 TGCGATTGTCACGCACCACCATTGAACAAATCGATTGGTCAACCTGCATTGCCCGTTATG 8752 Query 21772 ACCGGCCGCACACG---TTGCACTATCTCGACCCGCCGTATTGGGCGACCGCTGGCTATG 21828 |||| ||||||||| || ||| | |||||||||||||||| || | ||||||| Sbjct 8753 ACCGTCCGCACACGCTCTTTTACTGT---GACCCGCCGTATTGGGGTACTGAGGGCTATG 8809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125437762085958