Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3969 114 2e-20 >seq3969 Length=6340 Score = 114 bits (126), Expect = 2e-20 Identities = 255/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Plus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| ||||| || || || || || | || |||||| | ||| ||||| || Sbjct 1651 CTGACGGTCAAAACGGCCCGGACGCAGCAATGCAGGGTCAAGCACGTCAGGACGGTTGGT 1710 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 || || || || | ||||| | | || || |||||||||||| || | || Sbjct 1711 GGCGGCAATCACGATAATGCCTTCATTGCCTTCAAAACCATCCATCTCAACCAGCATCTG 1770 Query 12818 ATTGATGGTTTGTTCACGTTCATCAT-TCGCGGGCATACCACCCGCACTGCGTTGCTTAC 12876 || | |||||||||||||||||||| | || | |||||||| ||||| || Sbjct 1771 GTTCAGGGTTTGTTCACGTTCATCATGACCACCGCCCA-GACCCGCACCACGTTGGCGAC 1829 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACA-----CGGTTGATTTTCACGGGCAAC 12931 ||||||| || ||||| |||||||| | |||||| ||| | ||||| | || Sbjct 1830 CGACGGCATCGATTTCATCAATGAAGATGATACAAGGCGCGGCT-TTTTTCGCCTGC--- 1885 Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991 || || || || ||||| | |||||||||||||| |||||||| ||||| | | Sbjct 1886 -TCGAACATGTCACGCACACGAGATGCACCGACACCCACGAACATCTCAACAAAGTCAGA 1944 Query 12992 GGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050 ||||| || | || || || || || | |||||| || || || ||| || |||| Sbjct 1945 ACCGGAA-ATGGTGAAAAATGGCACCTTCGCTTCACCGGCAATCGCCTTGGCAAGCAGGG 2003 Query 13051 TCTTCCCCGTCCCTGG 13066 |||| || || || || Sbjct 2004 TCTTACCTGTTCCCGG 2019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613380380392920