Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_013599.1 Length=36674 Score E Sequences producing significant alignments: (Bits) Value seq1577 223 8e-54 seq3142 206 6e-49 seq3892 187 6e-43 seq2120 93.3 1e-14 >seq1577 Length=31499 Score = 223 bits (246), Expect = 8e-54 Identities = 372/538 (69%), Gaps = 15/538 (3%) Strand=Plus/Plus Query 1870 GTTTCACCGCTTCCAGCAGCAGGTCCTGTACTTCGCGTTTAGATTCACGGCGGGCCATCA 1929 |||||| || |||||||| | ||||| || | ||||| || || || || |||||| Sbjct 17441 GTTTCATTGCATCCAGCAGGATATCCTGCACGTTTCGTTTTGAATCGCGCCGTTCCATCA 17500 Query 1930 CCAATTCATCCACCGTGCCCGCCGCCACGATGTGGTGAATAAATACAGGCCGCTGATGTC 1989 ||| |||||| || ||| | || || | || |||||||||||||| || || | ||| | Sbjct 17501 CCAGTTCATCTACGGTGTCGGCGGCGATAATATGGTGAATAAATACCGGGCGGTTATGCC 17560 Query 1990 CGGCTTGCGCCTGACGTGTCGGCCCAATGCGTTCGATGATCTGCTGGTACTGCTCCAGGT 2049 | || || ||| ||||| ||||| || |||||||| || || |||||||| ||||| | Sbjct 17561 CCGCCTGTATCTGGCGTGTTGGCCCGATACGTTCGATAATTTGTTGGTACTGTTCCAGAT 17620 Query 2050 CCCACCAGTGGCCGAAGAAGGCCAAAATATTTCCGCCGTCTTGCAGATTTAAGCCATGAC 2109 |||||||||| ||| || ||| || |||||||| || || | || | ||| || | Sbjct 17621 CCCACCAGTGCGAGAAAAACACCAGGATGTTTCCGCCATCCTGTAAGTTAAGGCCGTGGC 17680 Query 2110 CGGCACTGGCCGGATGGGCAAATAGCACGGGAATGTTCCCCGCATTCCAATCGCGGATCG 2169 | || || || ||||| || |||||||| || || || || |||||||| ||||| | || Sbjct 17681 CTGCGCTAGCTGGATGAGCGAATAGCACCGGGATTTTACCGGCATTCCAGTCGCGCAGCG 17740 Query 2170 TGTCGGGGTGTTTGTCCAAAGCACGC------CCCTTGGGGAAGGCACGCTGCAACCGTG 2223 | ||| || || || || ||||| || ||||| | || || | Sbjct 17741 T------CTGTGGATCGGAATCAAGCTGTTTACCCTTTGGAAAGGCTTTCAATAAACGGG 17794 Query 2224 CGACATCACTTTTAAAGTGATACGCCACCAACACCGGCATACCGGCGGCTTCTTCGATAA 2283 | | ||| ||||||||||| || || |||| ||||||||||||| | | || | || | Sbjct 17795 CTAAATCGCTTTTAAAGTGGTAGGCAACCAGCACCGGCATACCGCCAGATTTGGCAATCA 17854 Query 2284 TGTCGTGCAGCGCCTCTAATTTCGCATCGTGCACGACTTCCCAGGCCTGACGTGTGTCAT 2343 | | |||||| | || || || ||||| | || ||||| || | |||| | Sbjct 17855 CGCTTTCCAGCGCTTGCAACTTGGCGTCGTGGATTTCTGACCAGG---TACCTTTGTCGT 17911 Query 2344 CGGTGTACAGCGCACCATTGGCCAGTTGCAGGCATTTAATTGTCTTGCTGGCGGCGTT 2401 |||| || | || || |||| | ||||| || || | || || ||||| ||| Sbjct 17912 CGGTATAGATAGCGCCGCTGGCGATTTGCAAACACTTCACGGTTTTTGCGGCGGTGTT 17969 Score = 183 bits (202), Expect = 7e-42 Identities = 191/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 7389 TCGGCGACGTTGCTCAGGTCCTCGAAGTCCTCCACGCTGGCCACACCGCCTCCAGCGAAC 7448 || ||| | | ||||| | ||||||||| ||| | || |||||||| |||||||| Sbjct 22529 TCAGCGCCTTCGCTCATATTCTCGAAGTCATCCGGCGTCGCTACACCGCCGCCAGCGAAG 22588 Query 7449 GCCTCACCATCACGCAAGAACTGCACGCCACCCAGCGAAGCGTTAATCCGCTTGCCGTAG 7508 || |||||||| |||| |||||| ||||| ||||| || |||||||| || |||||| | Sbjct 22589 GCGTCACCATCGCGCAGGAACTGGACGCCGCCCAGTGACGCGTTAATGCGTTTGCCGAAA 22648 Query 7509 TTGTTGTCCTGCGCCCAGAGTTCTATGTTGGCGTTGACGTAGCATCCGGCATACGGCCTG 7568 ||||| ||| ||||| | || ||| ||||||| |||||||| |||||||||||| || Sbjct 22649 TTGTTATCCATTGCCCATATATCGATGGTGGCGTTAACGTAGCAACCGGCATACGGCTTG 22708 Query 7569 CCGTCCTGCGCGGTGAGCGGGGTCCGGTCACGGTCGACCACCAGTGGCCGTGCCTTGTTA 7628 || || ||||| | || || || ||||||||| |||||||| || || || ||| Sbjct 22709 CCATCGGCGGCGGTCAACGCGGAACGAGCACGGTCGATAACCAGTGGTCGGGCTTTATTA 22768 Query 7629 CGCGCAGAGAC 7639 | || ||||| Sbjct 22769 CTGGCGGAGAC 22779 Score = 163 bits (180), Expect = 7e-36 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 7440 CCAGCGAACGCCTCACCATCACGCAAGAACTGCACGCCACCCAGCGAAGCGTTAATCCGC 7499 ||||||||||| |||||||| |||| |||||| ||||| ||||| || |||||||| || Sbjct 22918 CCAGCGAACGCGTCACCATCGCGCAGGAACTGGACGCCGCCCAGTGACGCGTTAATGCGT 22977 Query 7500 TTGCCGTAGTTGTTGTCCTGCGCCCAGAGTTCTATGTTGGCGTTGACGTAGCATCCGGCA 7559 |||||| | ||||| ||| ||||| | || ||| ||||||| |||||||| |||||| Sbjct 22978 TTGCCGAAATTGTTATCCATTGCCCATATATCGATGGTGGCGTTAACGTAGCAACCGGCA 23037 Query 7560 TACGGCCTGCCGTCCTGCGCGGTGAGCGGGGTCCGGTCACGGTCGACCACCAGTGGCCGT 7619 |||||| |||| || ||||| | || || || ||||||||| |||||||| || Sbjct 23038 TACGGCTTGCCATCGGCGGCGGTCAACGCGGAACGAGCACGGTCGATAACCAGTGGTCGG 23097 Query 7620 GCCTTGTTACGCGCAGAGAC 7639 || || |||| || ||||| Sbjct 23098 GCTTTATTACTGGCGGAGAC 23117 >seq3142 Length=9584 Score = 206 bits (228), Expect = 6e-49 Identities = 370/538 (69%), Gaps = 17/538 (3%) Strand=Plus/Plus Query 1872 TTCACCGCTTCCAGCAGCAGGTCCTGTACTTCGCGTTTAGATTCACGGCGGGCCATCACC 1931 |||| ||||||||||| | ||||| || | |||||| || || || || |||||||| Sbjct 5941 TTCATGGCTTCCAGCAGGATATCCTGCACGTTGCGTTTTGAATCGCGCCGTTCCATCACC 6000 Query 1932 AATTCATCCACCGTGCCCGCCGCCACGATGTGGTGAATAAATACAGGCCGCTGATGTCCG 1991 | ||| || || || | || || | || ||||| || |||| || || | ||| || Sbjct 6001 AGTTCGTCTACGGTATCGGCGGCGATAATATGGTGTATCCATACCGGGCGGTTATGCCCC 6060 Query 1992 GCTTGCGCCTGACGTGTCGGCCCAATGCGTTCGATGATCTGCTGGTACTGCTCCAGGTCC 2051 || || ||| ||||| ||||| || |||||||| || || |||||||| ||||| ||| Sbjct 6061 GCCTGTATCTGGCGTGTTGGCCCGATACGTTCGATAATTTGTTGGTACTGTTCCAGATCC 6120 Query 2052 CACCAGTG-GCCGAAGAAGGCCAAAATATTTCCGCCGTCTTGCAGATTTAAGCCATGACC 2110 |||||||| | || || ||| || |||||||| || || | || | ||| || || Sbjct 6121 CACCAGTGCGAGAAAAAACACCAGGATGTTTCCGCCATCCTGTAAGTTAAGGCCGTGGCC 6180 Query 2111 GGCACTGGCCGGATGGGCAAATAGCACGGGAATGTTCCCCGCATTCCAATCGCGGATCGT 2170 || || || ||||| || |||||||| || || || || |||||||| ||||| | ||| Sbjct 6181 TGCGCTAGCTGGATGAGCGAATAGCACCGGGATTTTACCGGCATTCCAGTCGCGCAGCGT 6240 Query 2171 GTCGGGGTGTTTGTCCAAAGCACGC------CCCTTGGGGAAGGCACGCTGCAACCGTGC 2224 ||| || || || || ||||| || ||||| | || || || Sbjct 6241 ------CTGTGGATCGGAATCAAGCTGTTTACCCTTTGGAAAGGCTTTCAATAAACGGGC 6294 Query 2225 GACATCACTTTTAAAGTGATACGCCACCAACACCGGCATACCGGCGGCTTCTTCGATAAT 2284 | ||| ||||||||||| || || |||| ||||||||||||| | | ||| | || | Sbjct 6295 TAAATCGCTTTTAAAGTGGTAGGCAACCAGCACCGGCATACCGCCAGATTCGGCAATCAC 6354 Query 2285 GTCGTGCAGCGCCTCTAATTTCGCATCGTGCACGACTTCCCAGGCCTGACGTGTGTCATC 2344 | | |||||| | || || || ||||| | || ||||| || | |||| || Sbjct 6355 GCTTTCCAGCGCTTGCAACTTGGCGTCGTGGATTTCTGACCAGG---TACCTTTGTCGTC 6411 Query 2345 GGTGTACAGCGCACCATTGGCCAGTTGCAGGCA-TTTAATTGTCTTGCTGGCGGCGTT 2401 ||| || | || || |||| | ||||| || ||| | || || ||||||||| Sbjct 6412 GGTATAGATAGCGCCGCTGGCGATTTGCAAACACTTTCACGGTTTTTGCGGCGGCGTT 6469 >seq3892 Length=6556 Score = 187 bits (206), Expect = 6e-43 Identities = 192/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 7389 TCGGCGACGTTGCTCAGGTCCTCGAAGTCCTCCACGCTGGCCACACCGCCTCCAGCGAAC 7448 |||||| | | ||||| | ||||||||| ||| | || |||||||| |||||||| Sbjct 2805 TCGGCGCCTTCGCTCATATTCTCGAAGTCATCCGGCGTCGCTACACCGCCGCCAGCGAAG 2746 Query 7449 GCCTCACCATCACGCAAGAACTGCACGCCACCCAGCGAAGCGTTAATCCGCTTGCCGTAG 7508 || |||||||| |||| |||||| ||||| ||||| || |||||||| || |||||| | Sbjct 2745 GCGTCACCATCGCGCAGGAACTGGACGCCGCCCAGTGACGCGTTAATGCGTTTGCCGAAA 2686 Query 7509 TTGTTGTCCTGCGCCCAGAGTTCTATGTTGGCGTTGACGTAGCATCCGGCATACGGCCTG 7568 ||||| ||| ||||| | || ||| ||||||| |||||||| |||||||||||| || Sbjct 2685 TTGTTATCCATTGCCCATATATCGATGGTGGCGTTAACGTAGCAACCGGCATACGGCTTG 2626 Query 7569 CCGTCCTGCGCGGTGAGCGGGGTCCGGTCACGGTCGACCACCAGTGGCCGTGCCTTGTTA 7628 || || ||||| | || || || ||||||||| |||||||| || || || ||| Sbjct 2625 CCATCGGCGGCGGTCAACGCGGAACGAGCACGGTCGATAACCAGTGGTCGGGCTTTATTA 2566 Query 7629 CGCGCAGAGAC 7639 | || ||||| Sbjct 2565 CTGGCGGAGAC 2555 >seq2120 Length=15447 Score = 93.3 bits (102), Expect = 1e-14 Identities = 122/166 (73%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 5029 CTTGGCTG-AGCGTGGGGCGGGGCAGGTTGTGCGGCTGAAACAGCCGCCCCGCCCACCGT 5087 ||||||| ||| | || | ||| | || ||||||||||| | ||||| ||||| || Sbjct 11702 CTTGGCTATAGCATTGGTCTGGGTAAATTTTGCGGCTGAAATAATCGCCCGGCCCATCGC 11643 Query 5088 CCGGT--GCGACTGGCCCCGTTGAATTGCAGCGTGCCGCGCAGGCGGCCATCGCGGCTGG 5145 ||||| ||||| ||| | |||||||| || ||||||||||| || || |||||| Sbjct 11642 CCGGTACGCGACGCGCCACAA--AATTGCAGAGTTCCGCGCAGGCGTCCGTCACGGCTGA 11585 Query 5146 TGCAGTTCAGCAGCGCCTGATACTTAGCGGTGCTGGTGGTGCTGGC 5191 || |||| ||| | | || ||| ||||||||||| |||||| Sbjct 11584 CGCCTTTCATCAGGGTTTTGTATTTACTGGTGCTGGTGGAGCTGGC 11539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117212177717784