Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq57 98.7 1e-15 seq504 96.9 3e-15 >seq57 Length=2082711 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| |||||| | || || |||||||||||| | || || || | | Sbjct 1620435 ATGCAGATATTCGTCAAAACGTTAACCGGAAAAACCATCACCTTAGAAGTAGAACCATCT 1620376 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| ||||| | || ||||| || ||||| | || ||| Sbjct 1620375 GATACAATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 1620316 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || ||||| ||| |||| || | ||||| || || ||||| Sbjct 1620315 CAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACACTGTCTGATTACAAT 1620256 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || || | ||| |||||||||| || ||| | ||||| || Sbjct 1620255 ATACAGAAAGAGTCCACGTTGCATTTGGTTCTTCGTCTCAGAGGTGG 1620209 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || |||||||||||| | ||||| || || || || | || || ||| | Sbjct 1621350 AAAATGCAGATCTTCGTAAAAACGTTGACGGGGAAGACAATAACTCTTGAAGTTGAGCCT 1621291 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | || ||||| | || | ||||| | || || || ||||| || | || Sbjct 1621290 TCAGATACTATTGAAAACG-TAAAGGCTAAAATTCAAGATAAGGAAGGAATCCCTCCTGA 1621232 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | |||| || || || ||| |||| || | || ||||| ||| || Sbjct 1621231 TCAGCAACGATTAATTTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACCCTATCCGATTA 1621172 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || ||||| | ||| |||||||||| || || | ||||| || Sbjct 1621171 CAATATACAGAAGGAGTCCACGTTGCATTTGGTTCTTCGACTCAGAGGTGG 1621121 >seq504 Length=327254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 38233 TCTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACG 38292 ||||||||| | ||||||| || || ||||| | ||||| ||||| || ||| | || | Sbjct 214303 TCTTTAAAATA-TGCAAATTTTTGTGAAAACTTTGACGGGTAAAACAATTACCCTTGAGG 214245 Query 38293 TCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTC 38352 | || || | |||| | ||| |||| | ||| |||| || ||||| ||||||| Sbjct 214244 TTGAACCCTCAGACACAATTGAAAATGTTAAGGCAAAGATCCAAGATAAAGAAGGAATTC 214185 Query 38353 CCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCA 38412 | | || || || | | |||| || ||||||||||| || || | |||||||| Sbjct 214184 CTCCAGATCAGCAAAGATTGATTTTTGCTGGCAAACAGCTAGAAGATGGACGCACCCTTT 214125 Query 38413 ACGACTACAACATCCA-AAAGG 38433 ||| ||||| ||||| ||||| Sbjct 214124 CCGATTACAATATCCAGAAAGG 214103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500069408030080