Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3969 113 5e-20 >seq3969 Length=6340 Score = 113 bits (124), Expect = 5e-20 Identities = 285/426 (67%), Gaps = 22/426 (5%) Strand=Plus/Plus Query 9143 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 9202 || ||||| ||| || || |||||| || ||| | || | || ||| ||||| || Sbjct 1606 CAGGATCTGCTCACGACCACGAACATCCGGCAGACCAACCACTACCTGACGGTCAAAACG 1665 Query 9203 ACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAAC 9262 || ||||| || | || ||||| | ||| || || || ||||| || || | Sbjct 1666 GCCCGGACGCAGCAATGCAGGGTCAAGCACGTCAGGACGGTTGGTGGCGGCAATCACGAT 1725 Query 9263 AATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTG 9319 ||| ||| ||||| ||||||||||||||||| || | ||||| | ||||| Sbjct 1726 AATGCCT---TCATTGCCTTCAAAACCATCCATCTCAACCAGCATCTGGTTCAGGGTTTG 1782 Query 9320 TTCCCGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAA 9378 ||| |||||||||| | || | ||| |||| ||||| || |||||||| | Sbjct 1783 TTCACGTTCATCATGACCACCGCCCA-GACCCGCACCACGTTGGCGACCGACGGCATCGA 1841 Query 9379 TCTCATCAATGAAGACAATACATGG------TTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 | ||||||||||||| ||||| || || ||||||| || || || | | Sbjct 1842 TTTCATCAATGAAGATGATACAAGGCGCGGCTT--TTTTCGCCTGC----TCGAACATGT 1895 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | || || | || || ||||| || |||||||| ||||||| | ||||| || Sbjct 1896 CACGCACACGAGATGCACCGACACCCACGAACATCTCAACAAAGTCAGAACCGGAA-ATG 1954 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || || || || || | |||||| ||||| || ||| || || |||||||| || Sbjct 1955 GTGAAAAATGGCACCTTCGCTTCACCGGCAATCGCCTTGGCAAGCAGGGTCTTACCTGTT 2014 Query 9552 CCTGGC 9557 || ||| Sbjct 2015 CCCGGC 2020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589858843593880