Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq2784 237 5e-58 seq1206 185 3e-42 seq5140 131 5e-26 seq13862 109 2e-19 seq5862 96.9 1e-15 seq1209 86.0 2e-12 >seq2784 Length=12453 Score = 237 bits (262), Expect = 5e-58 Identities = 262/342 (77%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 35522 GTGGCAGACACCGATGATGGCTTTATCATGCTGGCTATGGAGCTGTATGAGGAGCTTATT 35581 ||||| ||||| ||||||||||| ||||||||||| |||||||| || || || || || Sbjct 4749 GTGGCTGACACTGATGATGGCTTCATCATGCTGGCGATGGAGCTTTACGAAGAACTGATC 4690 Query 35582 GGAGCTAA-CTTA-ACGAAGAACCAGCAGAAGATTGCACATGCTGTTTGTCGGAAAACAT 35639 || ||||| || | ||| | | | ||| ||| | ||||| ||||| || || || |||| Sbjct 4689 GGCGCTAATCTGACACGCA-ATCAAGCC-AAGGTGGCACACGCTGTATGCCGAAAGACAT 4632 Query 35640 ATGGCTTCAAAAAGAAGATGGATCGCATTGCTGACATCCAGCTAGCCAGCCTTTGCAGAA 35699 | |||||||| ||||| ||||||||||||||||||| || ||||| |||||||||| Sbjct 4631 ACGGCTTCAAGAAGAAAATGGATCGCATTGCTGACAGTCAATTAGCCGAGCTTTGCAGAA 4572 Query 35700 TAAGCAGGTCTAAAGCAAATATCGCTAAAAACCAACTCATTGAGATGGGTGTTCTACTGA 35759 | |||||| | || || || || || ||||| | || || | ||| ||||| ||| Sbjct 4571 TCAGCAGGCCAAAGGCCAACATTGCCAAAAATGAGCTTATCGCCATGAAAGTTCTGGTGA 4512 Query 35760 AATCAAAGG--GTCAGATTGGCCCTAACAAAAACATATCTGAATGGAAAATACCTGACTG 35817 || | || | | |||||||| |||||||||||||| |||||| | || || || || Sbjct 4511 AA--GACGGAAGCAAAATTGGCCCAAACAAAAACATATCAGAATGGGAGATCCCGGAGTG 4454 Query 35818 TTCCCAATTTGATAACTTTGTTACCAAAGAGGTAACAAATAA 35859 ||||||| | |||||| ||||||||||| || |||||| || Sbjct 4453 TTCCCAAATAGATAACATTGTTACCAAATCGGGAACAAAAAA 4412 >seq1206 Length=31275 Score = 185 bits (204), Expect = 3e-42 Identities = 233/315 (74%), Gaps = 9/315 (3%) Strand=Plus/Plus Query 35493 GCCCTAAGCCGAAGGGCAT--GGAGCGAAGAGTGGCAGACACCGATGATGGCTTTATCAT 35550 ||||| ||| | ||||| ||||| | ||||| ||||| ||||||||||| ||||| Sbjct 13235 GCCCTGAGCAG--GGGCAACAGGAGCCTCGCGTGGCTGACACTGATGATGGCTTCATCAT 13292 Query 35551 GCTGGCTATGGAGCTGTATGAGGAGCTTATTGGAGCTAACTTAACGAAGAACCAGCAGAA 35610 |||||| |||||||| || || || || || || ||||| | || || || || Sbjct 13293 GCTGGCGATGGAGCTTTACGAAGAACTGATCGGCGCTAATCTGACTCGCAATCAAGCCAA 13352 Query 35611 GATTGCACATGCTGTTTGTCGGAAAACATATGGCTTCAAAAAGAAGATGGATCGCATTGC 35670 ||| ||||| ||||| || || || ||||| |||||||| ||||| |||||||||||||| Sbjct 13353 GATGGCACACGCTGTATGCCGAAAGACATACGGCTTCAAGAAGAAAATGGATCGCATTGC 13412 Query 35671 TGACATCCAGCTAGCCAGCCTTTGCAGAATAAGCAGGTCTAAAGCAAATATCGCTAAAAA 35730 ||||| || ||||| ||||||||||| |||||| | || || || || || |||| Sbjct 13413 TGACAGTCAATTAGCCGAGCTTTGCAGAATCAGCAGGCCAAAGGCCAACATTGC-CAAAA 13471 Query 35731 CCAACTCATTGAGATGGGTGTTCTACTGAAATCAAAGG--GTCAGATTGGCCCTAACAAA 35788 | || || | ||| ||||| ||||| | || | | |||||||| |||||| Sbjct 13472 TGAGCTTATCGCCATGAAAGTTCTGGTGAAA--GACGGAAGCAAAATTGGCCCAAACAAA 13529 Query 35789 AACATATCTGAATGG 35803 |||||||| |||||| Sbjct 13530 AACATATCAGAATGG 13544 >seq5140 Length=4255 Score = 131 bits (144), Expect = 5e-26 Identities = 188/260 (72%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 41056 GAGAAGCCCCGCACCCTTGCGCAGTGGAAAACGCTGTTTGTTTCCGGCCATGCGATGGCT 41115 || || |||||| | || | | ||||| |||||||||| || || ||||| || ||| Sbjct 3651 GATAAACCCCGCCCGCTGCTGGACTGGAAGGCGCTGTTTGTCTCGGGACATGCCATCGCT 3710 Query 41116 ACCGGGCTGGGCGCTG-ACGTGGTTCCGGGGCTGGAAGGGGAGTTCTGCAACATCAGAGA 41174 ||||| | || || | | ||||| |||||||||| |||||||| |||| |||| | || Sbjct 3711 ACCGG-CAGGCCGGGGGAGGTGGTGACGGGGCTGGAGGGGGAGTTTTGCAGCATCCGCGA 3769 Query 41175 ATCGACGGCAAAAATGGGAATTAAGCGAATGGCTAGTTTGATTGAGTATTCAACTGCGTG 41234 ||||| | ||||| | ||||| ||| ||||||||||||||| | || || Sbjct 3770 GAGCACGGCTCAGATGGGCGTAAAGCGCATGAACAGTTTGATTGAGTATGCCCAGGCCTG 3829 Query 41235 GGCCGTGGGTAACGGCGTACAGCTGCGCGAGGTTCGGTA---CGGGAACGATTATTTTGG 41291 | | || || |||||||| || ||| ||||| || || |||| ||||||||||| Sbjct 3830 GTCGGTCGGCAACGGCGTCAGGCGGCGGGAGGTGCGTTATTCCGGG---GATTATTTTGG 3886 Query 41292 GAGGGTGGCGTGACAGAAAA 41311 ||| || | ||| |||||| Sbjct 3887 GAGAGTCGGATGA-AGAAAA 3905 >seq13862 Length=1098 Score = 109 bits (120), Expect = 2e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 41056 GAGAAGCCCCGCACCCTTGCGCAGTGGAAAACGCTGTTTGTTTCCGGCCATGCGATGGCT 41115 || || |||||| | || | | |||||| ||||||||||||| || ||||| || ||| Sbjct 879 GATAAACCCCGCCCGCTGCTGGACTGGAAAGCGCTGTTTGTTTCGGGACATGCCATCGCT 938 Query 41116 ACCGGGCTGGGC-GCTGACGTGGTTCCGGGGCTGGAAGGGGAGTTCTGCAACATCAGAGA 41174 ||| ||| || | | || ||||| |||||||||| |||||||| |||| |||| | || Sbjct 939 ACC-GGCAGGCCGGGGGAGGTGGTGACGGGGCTGGAGGGGGAGTTATGCAGCATCCGCGA 997 Query 41175 ATCGACGGCAAAAATGGGAATTAAGCGAATGGCTAGTTTGATTGAGTAT 41223 ||||| | ||||| | ||||| ||| ||||||||||||||| Sbjct 998 GAGCACGGCTCAGATGGGCGTAAAGCGCATGAACAGTTTGATTGAGTAT 1046 >seq5862 Length=3465 Score = 96.9 bits (106), Expect = 1e-15 Identities = 88/107 (82%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 44730 TGGAACTCTGGCGTAGGTGGTTCGCGCGGATGTCTGAAAAACCTCAGGAACTGGTTCGAT 44789 |||||||||||||||| ||||||||||||||| ||||| | | |||||| | ||||||| Sbjct 2635 TGGAACTCTGGCGTAGATGGTTCGCGCGGATGCCTGAAGAGCATCAGGAGATAGTTCGAT 2694 Query 44790 TCCAGCGGGTTCCACCA-ATTACAAGCCTCGCATCCGTGCGGGGCTT 44835 || | |||||||||||| ||| | || ||| |||| ||| ||||| Sbjct 2695 TCTATCGGGTTCCACCACATTTAAGGCTACGC-TCCG-GCGTGGCTT 2739 >seq1209 Length=44547 Score = 86.0 bits (94), Expect = 2e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 33977 GATAGCATAGAGCTTCCCATCAACTAtttttttATTGTTGGTATCTACTGCAACAGTTGT 34036 ||| || |||| ||| ||||||| || |||| |||||| | || || || || || Sbjct 6743 GATGGCGTAGATCTTGCCATCAATAATACGCTTATCGTTGGTGTTGACGGCGACGGTGGT 6684 Query 34037 ACCGTCAGGGATAATAGGCTCCATGCTATTCCCGGTGGCAGGAAAGCATAGCACCCCTTC 34096 || || || |||| || |||||||| | || |||| || || || || || || Sbjct 6683 GCCATCGGGAATAAATGGTTCCATGCTGTCGCCCTTGGCCGGGAAACAGAGTACGCCGGA 6624 Query 34097 GCCGCTTGAATTTGCACCAACTCTGCGAAGAGTGGCCTTTGAAAATCTCAACATAAACCC 34156 ||| ||||| ||||| || | ||| | || | || ||||| | |||| ||||||| Sbjct 6623 GCCATCGGAATTCGCACCGACGCGGCGTAAGGTCGATTTGGAAAACCGCAACTTAAACCC 6564 Query 34157 ATTATGATCTTC 34168 ||||||||||| Sbjct 6563 GTTATGATCTTC 6552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151141513472154