Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_015295.1
Length=47279
Score E
Sequences producing significant alignments: (Bits) Value
seq2784 237 5e-58
seq1206 185 3e-42
seq5140 131 5e-26
seq13862 109 2e-19
seq5862 96.9 1e-15
seq1209 86.0 2e-12
>seq2784
Length=12453
Score = 237 bits (262), Expect = 5e-58
Identities = 262/342 (77%), Gaps = 8/342 (2%)
Strand=Plus/Minus
Query 35522 GTGGCAGACACCGATGATGGCTTTATCATGCTGGCTATGGAGCTGTATGAGGAGCTTATT 35581
||||| ||||| ||||||||||| ||||||||||| |||||||| || || || || ||
Sbjct 4749 GTGGCTGACACTGATGATGGCTTCATCATGCTGGCGATGGAGCTTTACGAAGAACTGATC 4690
Query 35582 GGAGCTAA-CTTA-ACGAAGAACCAGCAGAAGATTGCACATGCTGTTTGTCGGAAAACAT 35639
|| ||||| || | ||| | | | ||| ||| | ||||| ||||| || || || ||||
Sbjct 4689 GGCGCTAATCTGACACGCA-ATCAAGCC-AAGGTGGCACACGCTGTATGCCGAAAGACAT 4632
Query 35640 ATGGCTTCAAAAAGAAGATGGATCGCATTGCTGACATCCAGCTAGCCAGCCTTTGCAGAA 35699
| |||||||| ||||| ||||||||||||||||||| || ||||| ||||||||||
Sbjct 4631 ACGGCTTCAAGAAGAAAATGGATCGCATTGCTGACAGTCAATTAGCCGAGCTTTGCAGAA 4572
Query 35700 TAAGCAGGTCTAAAGCAAATATCGCTAAAAACCAACTCATTGAGATGGGTGTTCTACTGA 35759
| |||||| | || || || || || ||||| | || || | ||| ||||| |||
Sbjct 4571 TCAGCAGGCCAAAGGCCAACATTGCCAAAAATGAGCTTATCGCCATGAAAGTTCTGGTGA 4512
Query 35760 AATCAAAGG--GTCAGATTGGCCCTAACAAAAACATATCTGAATGGAAAATACCTGACTG 35817
|| | || | | |||||||| |||||||||||||| |||||| | || || || ||
Sbjct 4511 AA--GACGGAAGCAAAATTGGCCCAAACAAAAACATATCAGAATGGGAGATCCCGGAGTG 4454
Query 35818 TTCCCAATTTGATAACTTTGTTACCAAAGAGGTAACAAATAA 35859
||||||| | |||||| ||||||||||| || |||||| ||
Sbjct 4453 TTCCCAAATAGATAACATTGTTACCAAATCGGGAACAAAAAA 4412
>seq1206
Length=31275
Score = 185 bits (204), Expect = 3e-42
Identities = 233/315 (74%), Gaps = 9/315 (3%)
Strand=Plus/Plus
Query 35493 GCCCTAAGCCGAAGGGCAT--GGAGCGAAGAGTGGCAGACACCGATGATGGCTTTATCAT 35550
||||| ||| | ||||| ||||| | ||||| ||||| ||||||||||| |||||
Sbjct 13235 GCCCTGAGCAG--GGGCAACAGGAGCCTCGCGTGGCTGACACTGATGATGGCTTCATCAT 13292
Query 35551 GCTGGCTATGGAGCTGTATGAGGAGCTTATTGGAGCTAACTTAACGAAGAACCAGCAGAA 35610
|||||| |||||||| || || || || || || ||||| | || || || ||
Sbjct 13293 GCTGGCGATGGAGCTTTACGAAGAACTGATCGGCGCTAATCTGACTCGCAATCAAGCCAA 13352
Query 35611 GATTGCACATGCTGTTTGTCGGAAAACATATGGCTTCAAAAAGAAGATGGATCGCATTGC 35670
||| ||||| ||||| || || || ||||| |||||||| ||||| ||||||||||||||
Sbjct 13353 GATGGCACACGCTGTATGCCGAAAGACATACGGCTTCAAGAAGAAAATGGATCGCATTGC 13412
Query 35671 TGACATCCAGCTAGCCAGCCTTTGCAGAATAAGCAGGTCTAAAGCAAATATCGCTAAAAA 35730
||||| || ||||| ||||||||||| |||||| | || || || || || ||||
Sbjct 13413 TGACAGTCAATTAGCCGAGCTTTGCAGAATCAGCAGGCCAAAGGCCAACATTGC-CAAAA 13471
Query 35731 CCAACTCATTGAGATGGGTGTTCTACTGAAATCAAAGG--GTCAGATTGGCCCTAACAAA 35788
| || || | ||| ||||| ||||| | || | | |||||||| ||||||
Sbjct 13472 TGAGCTTATCGCCATGAAAGTTCTGGTGAAA--GACGGAAGCAAAATTGGCCCAAACAAA 13529
Query 35789 AACATATCTGAATGG 35803
|||||||| ||||||
Sbjct 13530 AACATATCAGAATGG 13544
>seq5140
Length=4255
Score = 131 bits (144), Expect = 5e-26
Identities = 188/260 (72%), Gaps = 9/260 (3%)
Strand=Plus/Plus
Query 41056 GAGAAGCCCCGCACCCTTGCGCAGTGGAAAACGCTGTTTGTTTCCGGCCATGCGATGGCT 41115
|| || |||||| | || | | ||||| |||||||||| || || ||||| || |||
Sbjct 3651 GATAAACCCCGCCCGCTGCTGGACTGGAAGGCGCTGTTTGTCTCGGGACATGCCATCGCT 3710
Query 41116 ACCGGGCTGGGCGCTG-ACGTGGTTCCGGGGCTGGAAGGGGAGTTCTGCAACATCAGAGA 41174
||||| | || || | | ||||| |||||||||| |||||||| |||| |||| | ||
Sbjct 3711 ACCGG-CAGGCCGGGGGAGGTGGTGACGGGGCTGGAGGGGGAGTTTTGCAGCATCCGCGA 3769
Query 41175 ATCGACGGCAAAAATGGGAATTAAGCGAATGGCTAGTTTGATTGAGTATTCAACTGCGTG 41234
||||| | ||||| | ||||| ||| ||||||||||||||| | || ||
Sbjct 3770 GAGCACGGCTCAGATGGGCGTAAAGCGCATGAACAGTTTGATTGAGTATGCCCAGGCCTG 3829
Query 41235 GGCCGTGGGTAACGGCGTACAGCTGCGCGAGGTTCGGTA---CGGGAACGATTATTTTGG 41291
| | || || |||||||| || ||| ||||| || || |||| |||||||||||
Sbjct 3830 GTCGGTCGGCAACGGCGTCAGGCGGCGGGAGGTGCGTTATTCCGGG---GATTATTTTGG 3886
Query 41292 GAGGGTGGCGTGACAGAAAA 41311
||| || | ||| ||||||
Sbjct 3887 GAGAGTCGGATGA-AGAAAA 3905
>seq13862
Length=1098
Score = 109 bits (120), Expect = 2e-19
Identities = 127/169 (75%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 41056 GAGAAGCCCCGCACCCTTGCGCAGTGGAAAACGCTGTTTGTTTCCGGCCATGCGATGGCT 41115
|| || |||||| | || | | |||||| ||||||||||||| || ||||| || |||
Sbjct 879 GATAAACCCCGCCCGCTGCTGGACTGGAAAGCGCTGTTTGTTTCGGGACATGCCATCGCT 938
Query 41116 ACCGGGCTGGGC-GCTGACGTGGTTCCGGGGCTGGAAGGGGAGTTCTGCAACATCAGAGA 41174
||| ||| || | | || ||||| |||||||||| |||||||| |||| |||| | ||
Sbjct 939 ACC-GGCAGGCCGGGGGAGGTGGTGACGGGGCTGGAGGGGGAGTTATGCAGCATCCGCGA 997
Query 41175 ATCGACGGCAAAAATGGGAATTAAGCGAATGGCTAGTTTGATTGAGTAT 41223
||||| | ||||| | ||||| ||| |||||||||||||||
Sbjct 998 GAGCACGGCTCAGATGGGCGTAAAGCGCATGAACAGTTTGATTGAGTAT 1046
>seq5862
Length=3465
Score = 96.9 bits (106), Expect = 1e-15
Identities = 88/107 (82%), Gaps = 3/107 (3%)
Strand=Plus/Plus
Query 44730 TGGAACTCTGGCGTAGGTGGTTCGCGCGGATGTCTGAAAAACCTCAGGAACTGGTTCGAT 44789
|||||||||||||||| ||||||||||||||| ||||| | | |||||| | |||||||
Sbjct 2635 TGGAACTCTGGCGTAGATGGTTCGCGCGGATGCCTGAAGAGCATCAGGAGATAGTTCGAT 2694
Query 44790 TCCAGCGGGTTCCACCA-ATTACAAGCCTCGCATCCGTGCGGGGCTT 44835
|| | |||||||||||| ||| | || ||| |||| ||| |||||
Sbjct 2695 TCTATCGGGTTCCACCACATTTAAGGCTACGC-TCCG-GCGTGGCTT 2739
>seq1209
Length=44547
Score = 86.0 bits (94), Expect = 2e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 33977 GATAGCATAGAGCTTCCCATCAACTAtttttttATTGTTGGTATCTACTGCAACAGTTGT 34036
||| || |||| ||| ||||||| || |||| |||||| | || || || || ||
Sbjct 6743 GATGGCGTAGATCTTGCCATCAATAATACGCTTATCGTTGGTGTTGACGGCGACGGTGGT 6684
Query 34037 ACCGTCAGGGATAATAGGCTCCATGCTATTCCCGGTGGCAGGAAAGCATAGCACCCCTTC 34096
|| || || |||| || |||||||| | || |||| || || || || || ||
Sbjct 6683 GCCATCGGGAATAAATGGTTCCATGCTGTCGCCCTTGGCCGGGAAACAGAGTACGCCGGA 6624
Query 34097 GCCGCTTGAATTTGCACCAACTCTGCGAAGAGTGGCCTTTGAAAATCTCAACATAAACCC 34156
||| ||||| ||||| || | ||| | || | || ||||| | |||| |||||||
Sbjct 6623 GCCATCGGAATTCGCACCGACGCGGCGTAAGGTCGATTTGGAAAACCGCAACTTAAACCC 6564
Query 34157 ATTATGATCTTC 34168
|||||||||||
Sbjct 6563 GTTATGATCTTC 6552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151141513472154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |