Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq57 93.3 3e-14 >seq57 Length=2082711 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| |||| || || || | |||| || |||||||||||| || || || | Sbjct 1619979 TTCCTCCTCTCAGTCTTAAGACAAGATGAAGAGTTGATTCTTTCTGAATATTGTAATCAG 1620038 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||||| | || |||| || | |||||| || || || || | | ||||||||| | | Sbjct 1620039 AAAGGGTGCGCCCATCTTCTAACTGTTTCCCAGCGAAAATCAACCTTTGCTGGTCAGGTG 1620098 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || ||||||| ||| || | | || | ||| | || | Sbjct 1620099 GTATTCCTTCCTTATCTTGAATCTTCGCTTTTACATTTTCAATTGTGTCAGAAGGTTCTA 1620158 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || || ||||| || |||||||| || ||||||||||| Sbjct 1620159 CTTCAAGAGTAATAGTCTTTCCTGTAAGAGTCTTAACGAAGATCTGCAT 1620207 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| || ||||| || || || | || |||| || ||||| |||||||| || Sbjct 1619332 TTCTTTCTGGATATTATAATCTGAGAGAGTGCGGCCATCTTCTAGCTGCTTTCCGGCGAA 1619391 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| | ||| |||||| | || | || || || || ||| || || || Sbjct 1619392 GATTAACCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGAATTTTGGCCTTAACATT 1619451 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | ||||| || | || ||||| ||||| || ||||||||||| Sbjct 1619452 TTCGATAGTGTCAGATGGTTCAACTTCAAGTGTAATGGTCTTTCCTGTAAGAGTCTTCAC 1619511 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 1619512 AAAGATCTGCATA 1619524 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||||||||| || ||||| |||| |||| |||| |||||| || || || Sbjct 1618877 TCTTTCTGAATGTTATAATCAGAAAGAGTTCGACCATCTTCCAACTGTTTCCCAGCGAAA 1618936 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||| || | || | || ||||| || |||||| ||| || | Sbjct 1618937 ATCAACCTTTGCTGATCGGGAGGGATTCCTTCCTTATCTTGAATCTTAGCTTTTACATTT 1618996 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | || || || | ||| || |||||||| || | ||| ||||| Sbjct 1618997 TCAATTGTATCAGAAGGTTCTACTTCTAAGGTAATCGTTTTTCCTGTTAAAGTTTTCACG 1619056 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 1619057 AATATCTGCATA 1619068 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| ||||| || ||||| | || |||| || | ||| |||||||| || Sbjct 1620928 TTCTTTCTGAATATTATAATCTGAAAGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAA 1620987 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| || ||| |||||| |||| | || || || || ||| || || || Sbjct 1620988 GATTAATCTTTGTTGGTCTGGCGGAATTCCTTCTTTATCTTGAATTTTAGCCTTAACATT 1621047 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | ||||| || | || || |||||||| || || ||||| || Sbjct 1621048 TTCGATTGTGTCAGAAGGTTCAACTTCAAGTGTAATCGTTTTTCCTGTAAGGGTCTTGAC 1621107 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 1621108 GAAGATCTGCAT 1621119 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 ||||| || | ||| |||| || | || | || ||| |||||||| ||||| || Sbjct 1618610 TTTCCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATCT 1618669 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || | | | || |||| |||| ||||| || || || || | | ||||||||| | Sbjct 1618670 GACAAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGT 1618729 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | || |||||||| ||| ||| ||| || | | || | ||| | ||| Sbjct 1618730 GGTATTCCTTCCTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGTGTCAGATGGTTCA 1618789 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | || ||||||||||| || | ||| |||||||| || |||||| Sbjct 1618790 ACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCATA 1618840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324568171822536