Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq33 170 2e-37
seq126 111 2e-19
>seq33
Length=2490231
Score = 170 bits (188), Expect = 2e-37
Identities = 178/232 (77%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 19230 AACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTG 19289
|| ||| | |||||| | |||||||||||| || || |||| |||||| || || || ||
Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629
Query 19290 AAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAA 19349
|| |||||||||||||||||||| |||| || ||||| || ||| || || || ||
Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569
Query 19350 ATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATG 19409
||||||||||| ||||||||| || ||||| || || |||||||| |||||||||
Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509
Query 19410 TTTTTCATCTGAGGTT--AATGTATTCCAATCATTAATATCTTTAGATAAAT 19459
|||||| || ||||| || || |||||| || | ||| | | ||||||
Sbjct 181508 TTTTTCTTC--AGGTTTCAACCTAGTCCAATGATCTAAATCCTAAAATAAAT 181459
Score = 123 bits (136), Expect = 3e-23
Identities = 164/225 (73%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| |||||| ||||||||||| || || | || ||||| | ||||||||| |||
Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCTTT 182589
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
||||| ||||||| ||||| ||||| || |||| ||||| || || |||||||||
Sbjct 182588 AACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAGCA 182529
Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGC 19163
| | ||||||| || || | ||| ||| | || ||||||| || ||||| |||||
Sbjct 182528 ATAATTCTTTCTGCAAAAGTGGCAGTCTTA-GAGGAGATCCATTCCAAAGCCCAGTCAGC 182470
Query 19164 CTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208
|| || || ||||| || ||||| || | |||||| |||||
Sbjct 182469 TTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATA 182425
Score = 111 bits (122), Expect = 2e-19
Identities = 104/131 (79%), Gaps = 1/131 (1%)
Strand=Plus/Minus
Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503
||| |||| || | ||| ||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 181298 ATACCTTT-GAAAGATCAACTTCTTCAACCGTCCAAAAAGACGCTTCTGCTTTTTTGTAC 181240
Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTA 19563
|| | |||||||||| | |||| || |||||||| |||||||| || ||||| |
Sbjct 181239 ATTTGCCATATATCATGGTATTCAATTGGAAATATCACAAATCTTTTGGGGTTTTCACGA 181180
Query 19564 AGAATAGGTTC 19574
|| | ||||||
Sbjct 181179 AGTAGAGGTTC 181169
Score = 109 bits (120), Expect = 6e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTT 18671
||||||||| | | |||| |||| | | ||||| || || |||||| || |||
Sbjct 184260 TTAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTACACCTGCTTT 184201
Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731
|||||||| ||||| | |||||||||||||| |||||||| || | ||||||| |||
Sbjct 184200 CTGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATGTTC 184141
Query 18732 CATAAAATCAAATGGATTTT 18751
||| || |||||||||||||
Sbjct 184140 CATGAAGTCAAATGGATTTT 184121
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/200 (71%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 18787 AGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTAT 18845
||||| ||||| || ||||| | ||||| ||| ||||| | || ||||||||||| ||
Sbjct 182935 AGTAGCCTATCAGCAACAAACTCTATATACTGT-TTCATTAGCTCGCAATTCATTCCAAT 182877
Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905
| || || || | || ||||| |||||||| | || ||| ||||| ||| ||
Sbjct 182876 CATTTCTACTGGCAAGGCTTCTGTGAGAAATTCCTTCTCAATAACCACTGCATCTTCAAT 182817
Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965
|| || | ||| |||| | || | | ||||||||| ||||| | || ||
Sbjct 182816 TATTGAGGTGATTCTCTCTTTGGTCGGTTTTTGAACAAGATGTTTGAACATAAGGCAGGC 182757
Query 18966 AAAATCACAATGTAGTCCCT 18985
||||||||||||||| ||||
Sbjct 182756 AAAATCACAATGTAGACCCT 182737
>seq126
Length=1333976
Score = 111 bits (122), Expect = 2e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || |||||||||||| ||||||||| |||| | ||||| | |||||| | ||
Sbjct 1329714 TCCACCCGTAGAAATGCATAGAAGTTAATTTTCCATAATTTGGTTCAGCAATATGTACAT 1329773
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||||| ||||| |||||||| |||||||| |||||||| | ||| |||
Sbjct 1329774 TTAAGGATTGTGATTGATCGATAAATGCTCCTCTATCTGCTGCCATTTTTAATATAGTTT 1329833
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAAT 47200
| |||| || ||||| |||||||| |||||
Sbjct 1329834 TCTGTGAAATTTCCCACACTGTTTTGTAAAT 1329864
Score = 96.9 bits (106), Expect = 4e-15
Identities = 123/169 (73%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 47907 ACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTA 47966
||||||| || |||||||| | ||||| | ||||| ||| | |||||| |||||
Sbjct 1333083 ACCTCATCCGGTGAAGTATATTCAACAATTTCCGTACATAAATTGCTACATTTAATAGTT 1333142
Query 47967 CCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTG 48024
||||||||||| ||||| ||| ||||||| || ||||| | |||| | |||
Sbjct 1333143 CCCAAATTTTGTTGATTTGATTTACG--ATTACATGAATCTTTGTATAACATATACGGTA 1333200
Query 48025 TTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGC 48073
||||||||| | || || ||||| |||| ||||||| || |||||
Sbjct 1333201 CTCCAGTTTCCACTTGTGAATCAATTATAGCACTCCAAACGGTTCTAGC 1333249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561992605084680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |