Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq33 170 2e-37 seq126 111 2e-19 >seq33 Length=2490231 Score = 170 bits (188), Expect = 2e-37 Identities = 178/232 (77%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 19230 AACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTG 19289 || ||| | |||||| | |||||||||||| || || |||| |||||| || || || || Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629 Query 19290 AAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAA 19349 || |||||||||||||||||||| |||| || ||||| || ||| || || || || Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569 Query 19350 ATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATG 19409 ||||||||||| ||||||||| || ||||| || || |||||||| ||||||||| Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509 Query 19410 TTTTTCATCTGAGGTT--AATGTATTCCAATCATTAATATCTTTAGATAAAT 19459 |||||| || ||||| || || |||||| || | ||| | | |||||| Sbjct 181508 TTTTTCTTC--AGGTTTCAACCTAGTCCAATGATCTAAATCCTAAAATAAAT 181459 Score = 123 bits (136), Expect = 3e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || |||||| ||||||||||| || || | || ||||| | ||||||||| ||| Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCTTT 182589 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 ||||| ||||||| ||||| ||||| || |||| ||||| || || ||||||||| Sbjct 182588 AACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAGCA 182529 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGC 19163 | | ||||||| || || | ||| ||| | || ||||||| || ||||| ||||| Sbjct 182528 ATAATTCTTTCTGCAAAAGTGGCAGTCTTA-GAGGAGATCCATTCCAAAGCCCAGTCAGC 182470 Query 19164 CTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || || || ||||| || ||||| || | |||||| ||||| Sbjct 182469 TTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATA 182425 Score = 111 bits (122), Expect = 2e-19 Identities = 104/131 (79%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 ||| |||| || | ||| ||||||||||| ||||||||||| || ||||||||||| ||| Sbjct 181298 ATACCTTT-GAAAGATCAACTTCTTCAACCGTCCAAAAAGACGCTTCTGCTTTTTTGTAC 181240 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTA 19563 || | |||||||||| | |||| || |||||||| |||||||| || ||||| | Sbjct 181239 ATTTGCCATATATCATGGTATTCAATTGGAAATATCACAAATCTTTTGGGGTTTTCACGA 181180 Query 19564 AGAATAGGTTC 19574 || | |||||| Sbjct 181179 AGTAGAGGTTC 181169 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTT 18671 ||||||||| | | |||| |||| | | ||||| || || |||||| || ||| Sbjct 184260 TTAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTACACCTGCTTT 184201 Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||||| ||||| | |||||||||||||| |||||||| || | ||||||| ||| Sbjct 184200 CTGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATGTTC 184141 Query 18732 CATAAAATCAAATGGATTTT 18751 ||| || ||||||||||||| Sbjct 184140 CATGAAGTCAAATGGATTTT 184121 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 18787 AGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTAT 18845 ||||| ||||| || ||||| | ||||| ||| ||||| | || ||||||||||| || Sbjct 182935 AGTAGCCTATCAGCAACAAACTCTATATACTGT-TTCATTAGCTCGCAATTCATTCCAAT 182877 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 | || || || | || ||||| |||||||| | || ||| ||||| ||| || Sbjct 182876 CATTTCTACTGGCAAGGCTTCTGTGAGAAATTCCTTCTCAATAACCACTGCATCTTCAAT 182817 Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 || || | ||| |||| | || | | ||||||||| ||||| | || || Sbjct 182816 TATTGAGGTGATTCTCTCTTTGGTCGGTTTTTGAACAAGATGTTTGAACATAAGGCAGGC 182757 Query 18966 AAAATCACAATGTAGTCCCT 18985 ||||||||||||||| |||| Sbjct 182756 AAAATCACAATGTAGACCCT 182737 >seq126 Length=1333976 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || |||||||||||| ||||||||| |||| | ||||| | |||||| | || Sbjct 1329714 TCCACCCGTAGAAATGCATAGAAGTTAATTTTCCATAATTTGGTTCAGCAATATGTACAT 1329773 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||||| ||||| |||||||| |||||||| |||||||| | ||| ||| Sbjct 1329774 TTAAGGATTGTGATTGATCGATAAATGCTCCTCTATCTGCTGCCATTTTTAATATAGTTT 1329833 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAAT 47200 | |||| || ||||| |||||||| ||||| Sbjct 1329834 TCTGTGAAATTTCCCACACTGTTTTGTAAAT 1329864 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47907 ACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTA 47966 ||||||| || |||||||| | ||||| | ||||| ||| | |||||| ||||| Sbjct 1333083 ACCTCATCCGGTGAAGTATATTCAACAATTTCCGTACATAAATTGCTACATTTAATAGTT 1333142 Query 47967 CCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTG 48024 ||||||||||| ||||| ||| ||||||| || ||||| | |||| | ||| Sbjct 1333143 CCCAAATTTTGTTGATTTGATTTACG--ATTACATGAATCTTTGTATAACATATACGGTA 1333200 Query 48025 TTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGC 48073 ||||||||| | || || ||||| |||| ||||||| || ||||| Sbjct 1333201 CTCCAGTTTCCACTTGTGAATCAATTATAGCACTCCAAACGGTTCTAGC 1333249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561992605084680