Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq1653 214 6e-51 seq5140 156 1e-33 seq13862 116 1e-21 >seq1653 Length=29478 Score = 214 bits (236), Expect = 6e-51 Identities = 321/444 (72%), Gaps = 18/444 (4%) Strand=Plus/Minus Query 25892 AATGACACAAATCCG-GCGCGAGCGCGGAAAAACTAATGATATTACAGTGTGTTAAATGG 25950 ||||||||||| | ||||||||| ||| || | | || ||||||||| ||| | Sbjct 753 AATGACACAAAACTAAGCGCGAGCGTGGATAATTTGTTTAT-TTACAGTGTATTACGTTT 695 Query 25951 TGCTCTACGTTCTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTA 26010 | || || |||| ||||||||||||| ||||||||||||||| || |||| ||||||| Sbjct 694 GGAACTTCGATCTTTTAAGCCGTAGGTCATAGGTTCGAATCCTATAGTGCGTACCATTTA 635 Query 26011 AA--AACAGTCGCTTACGCCAGTTTCAAGCCAGCCTGATTTTCTCCTT--GTGTCGTATT 26066 || |||| ||| || | |||| | ||| || | ||| ||| | ||| Sbjct 634 AATCAACAAG---TTATGCTA--TTCAC-CGAGCGCTATACTTTCCAAAAGTGCCAGATT 581 Query 26067 TGTGTCATGGTT-GCCAAAAATGGCATCAATTTTCCGTGCGTGTTCGCTTAAGTGGTTCG 26125 ||| ||| | ||||| | | | |||||||| | || |||||| ||||||| || Sbjct 580 AGTGACATCGCCCGCCAAGACTT-CGTCAATTTTTCTGGCATGTTCGGTTAAGTGAACCG 522 Query 26126 GTGCCAGGTGAGCGTATCGACGTACCATTTCGATGGACTCCCAGCCGCCCATTTCTTGCA 26185 ||| | |||||||| || ||||||| ||||| ||||||||| ||||||||||||| Sbjct 521 GTGATAAATGAGCGTAACGTTGTACCATCTCGATACTCTCCCAGCCCCCCATTTCTTGCA 462 Query 26186 GAACTGACAACGGAACGCCGGACTGAATTAACCAGCTCGCCCAGGTATGCCGGAGGTCAT 26245 | |||| || ||||| ||||||| |||||| || ||||||||||| || || |||| Sbjct 461 ATGCAGACAGGGGCACGCCTGACTGAACTAACCAACTTGCCCAGGTATGTCGCAGATCAT 402 Query 26246 GAAAACGGAAGTCTTCTATACCCGCTCTTTCCAGT--CCAATGCGCCAGGCGACATTGTC 26303 |||| | |||||| ||| ||| ||| ||| | || || ||| || |||||| Sbjct 401 GAAATCTGAAGTCAGTTATTCCCACTC--TCCGTTTACCTGTGTTCCATGCAGAATTGTC 344 Query 26304 ATCCACTCGCATTTTGCGGACAGC 26327 ||||||||||||||| || || || Sbjct 343 ATCCACTCGCATTTTTCGTACTGC 320 >seq5140 Length=4255 Score = 156 bits (172), Expect = 1e-33 Identities = 226/319 (71%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 42538 CGGACATTGCCACAAAACTCACTCTTCCACGCGCTATGTGGCGACGTGTCAAAGCAACTG 42597 |||||||| || || ||| || ||||| ||| |||| ||| || || || || Sbjct 3582 CGGACATTACCGCAGAACGACCTGTTCCATGCGTTATGCACCGATGTTTCGCGTCAGGTG 3641 Query 42598 CAATGGGCAGGGAAGCGCCGGAACCTCTCGGAATGGAAGGTTCTGTTTGTCTCCGGGCAT 42657 ||||| | || | ||| || ||| ||||||| ||||||||||| || ||| Sbjct 3642 GTGTGGGCCGATAAACCCCGCCCGCTGCTGGACTGGAAGGCGCTGTTTGTCTCGGGACAT 3701 Query 42658 GCGGTCGCAACTGGCAAACCCGGTGAAGTTGTGCCGGGTATTGAGGGAGAGTTCTGCGCC 42717 || |||| || |||| || || || || ||| |||| | ||||| ||||| ||| | Sbjct 3702 GCCATCGCTACCGGCAGGCCGGGGGAGGTGGTGACGGGGCTGGAGGGGGAGTTTTGCAGC 3761 Query 42718 ATCCGAGAAAGCACCTCGAAGATGGGCATTAAGCGCATGAACAGCCTGATTGAGTACACG 42777 ||||| || ||||| | |||||||| | |||||||||||||| |||||||||| | Sbjct 3762 ATCCGCGAGAGCACGGCTCAGATGGGCGTAAAGCGCATGAACAGTTTGATTGAGTATGCC 3821 Query 42778 CAGGCCTTTGCCGTAGGCAATGGCGTTCAGCTCCGCGAAGTGCGCTATTCGCTGGACTAT 42837 ||||||| | || ||||| ||||| || || || ||||| ||||| ||| ||| Sbjct 3822 CAGGCCTGGTCGGTCGGCAACGGCGTCAGGCGGCGGGAGGTGCGTTATTCCGGGGATTAT 3881 Query 42838 TTCGGGAGGGTTGCATGAA 42856 || ||||| || | ||||| Sbjct 3882 TTTGGGAGAGTCGGATGAA 3900 >seq13862 Length=1098 Score = 116 bits (128), Expect = 1e-21 Identities = 200/289 (69%), Gaps = 1/289 (0%) Strand=Plus/Plus Query 42538 CGGACATTGCCACAAAACTCACTCTTCCACGCGCTATGTGGCGACGTGTCAAAGCAACTG 42597 |||||||| || || ||| || ||||| ||| |||| ||| || || || || Sbjct 810 CGGACATTACCGCAGAACGACCTGTTCCATGCGTTATGCACCGATGTTTCGCGTCAGGTG 869 Query 42598 CAATGGGCAGGGAAGCGCCGGAACCTCTCGGAATGGAAGGTTCTGTTTGTCTCCGGGCAT 42657 ||||| | || | ||| || ||| ||||| | |||||||| || || ||| Sbjct 870 GTGTGGGCCGATAAACCCCGCCCGCTGCTGGACTGGAAAGCGCTGTTTGTTTCGGGACAT 929 Query 42658 GCGGTCGCAACTGGCAAACCCGGTGAAGTTGTGCCGGGTATTGAGGGAGAGTTCTGCGCC 42717 || |||| || |||| || || || || ||| |||| | ||||| ||||| ||| | Sbjct 930 GCCATCGCTACCGGCAGGCCGGGGGAGGTGGTGACGGGGCTGGAGGGGGAGTTATGCAGC 989 Query 42718 ATCCGAGAAAGCACCTCGAAGATGGGCATTAAGCGCATGAACAGCCTGATTGAGTACACG 42777 ||||| || ||||| | |||||||| | |||||||||||||| |||||||||| | Sbjct 990 ATCCGCGAGAGCACGGCTCAGATGGGCGTAAAGCGCATGAACAGTTTGATTGAGTATGCC 1049 Query 42778 CAGGCCT-TTGCCGTAGGCAATGGCGTTCAGCTCCGCGAAGTGCGCTAT 42825 ||| ||| | | || ||| | ||||| || || || ||||| ||| Sbjct 1050 CAGCCCTGGTTCGGTCGGCTACGGCGTCAGGCGGCGGGAGGTGCGTTAT 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158490470023572