Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_016158.1
Length=49576
Score E
Sequences producing significant alignments: (Bits) Value
seq1653 214 6e-51
seq5140 156 1e-33
seq13862 116 1e-21
>seq1653
Length=29478
Score = 214 bits (236), Expect = 6e-51
Identities = 321/444 (72%), Gaps = 18/444 (4%)
Strand=Plus/Minus
Query 25892 AATGACACAAATCCG-GCGCGAGCGCGGAAAAACTAATGATATTACAGTGTGTTAAATGG 25950
||||||||||| | ||||||||| ||| || | | || ||||||||| ||| |
Sbjct 753 AATGACACAAAACTAAGCGCGAGCGTGGATAATTTGTTTAT-TTACAGTGTATTACGTTT 695
Query 25951 TGCTCTACGTTCTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTA 26010
| || || |||| ||||||||||||| ||||||||||||||| || |||| |||||||
Sbjct 694 GGAACTTCGATCTTTTAAGCCGTAGGTCATAGGTTCGAATCCTATAGTGCGTACCATTTA 635
Query 26011 AA--AACAGTCGCTTACGCCAGTTTCAAGCCAGCCTGATTTTCTCCTT--GTGTCGTATT 26066
|| |||| ||| || | |||| | ||| || | ||| ||| | |||
Sbjct 634 AATCAACAAG---TTATGCTA--TTCAC-CGAGCGCTATACTTTCCAAAAGTGCCAGATT 581
Query 26067 TGTGTCATGGTT-GCCAAAAATGGCATCAATTTTCCGTGCGTGTTCGCTTAAGTGGTTCG 26125
||| ||| | ||||| | | | |||||||| | || |||||| ||||||| ||
Sbjct 580 AGTGACATCGCCCGCCAAGACTT-CGTCAATTTTTCTGGCATGTTCGGTTAAGTGAACCG 522
Query 26126 GTGCCAGGTGAGCGTATCGACGTACCATTTCGATGGACTCCCAGCCGCCCATTTCTTGCA 26185
||| | |||||||| || ||||||| ||||| ||||||||| |||||||||||||
Sbjct 521 GTGATAAATGAGCGTAACGTTGTACCATCTCGATACTCTCCCAGCCCCCCATTTCTTGCA 462
Query 26186 GAACTGACAACGGAACGCCGGACTGAATTAACCAGCTCGCCCAGGTATGCCGGAGGTCAT 26245
| |||| || ||||| ||||||| |||||| || ||||||||||| || || ||||
Sbjct 461 ATGCAGACAGGGGCACGCCTGACTGAACTAACCAACTTGCCCAGGTATGTCGCAGATCAT 402
Query 26246 GAAAACGGAAGTCTTCTATACCCGCTCTTTCCAGT--CCAATGCGCCAGGCGACATTGTC 26303
|||| | |||||| ||| ||| ||| ||| | || || ||| || ||||||
Sbjct 401 GAAATCTGAAGTCAGTTATTCCCACTC--TCCGTTTACCTGTGTTCCATGCAGAATTGTC 344
Query 26304 ATCCACTCGCATTTTGCGGACAGC 26327
||||||||||||||| || || ||
Sbjct 343 ATCCACTCGCATTTTTCGTACTGC 320
>seq5140
Length=4255
Score = 156 bits (172), Expect = 1e-33
Identities = 226/319 (71%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 42538 CGGACATTGCCACAAAACTCACTCTTCCACGCGCTATGTGGCGACGTGTCAAAGCAACTG 42597
|||||||| || || ||| || ||||| ||| |||| ||| || || || ||
Sbjct 3582 CGGACATTACCGCAGAACGACCTGTTCCATGCGTTATGCACCGATGTTTCGCGTCAGGTG 3641
Query 42598 CAATGGGCAGGGAAGCGCCGGAACCTCTCGGAATGGAAGGTTCTGTTTGTCTCCGGGCAT 42657
||||| | || | ||| || ||| ||||||| ||||||||||| || |||
Sbjct 3642 GTGTGGGCCGATAAACCCCGCCCGCTGCTGGACTGGAAGGCGCTGTTTGTCTCGGGACAT 3701
Query 42658 GCGGTCGCAACTGGCAAACCCGGTGAAGTTGTGCCGGGTATTGAGGGAGAGTTCTGCGCC 42717
|| |||| || |||| || || || || ||| |||| | ||||| ||||| ||| |
Sbjct 3702 GCCATCGCTACCGGCAGGCCGGGGGAGGTGGTGACGGGGCTGGAGGGGGAGTTTTGCAGC 3761
Query 42718 ATCCGAGAAAGCACCTCGAAGATGGGCATTAAGCGCATGAACAGCCTGATTGAGTACACG 42777
||||| || ||||| | |||||||| | |||||||||||||| |||||||||| |
Sbjct 3762 ATCCGCGAGAGCACGGCTCAGATGGGCGTAAAGCGCATGAACAGTTTGATTGAGTATGCC 3821
Query 42778 CAGGCCTTTGCCGTAGGCAATGGCGTTCAGCTCCGCGAAGTGCGCTATTCGCTGGACTAT 42837
||||||| | || ||||| ||||| || || || ||||| ||||| ||| |||
Sbjct 3822 CAGGCCTGGTCGGTCGGCAACGGCGTCAGGCGGCGGGAGGTGCGTTATTCCGGGGATTAT 3881
Query 42838 TTCGGGAGGGTTGCATGAA 42856
|| ||||| || | |||||
Sbjct 3882 TTTGGGAGAGTCGGATGAA 3900
>seq13862
Length=1098
Score = 116 bits (128), Expect = 1e-21
Identities = 200/289 (69%), Gaps = 1/289 (0%)
Strand=Plus/Plus
Query 42538 CGGACATTGCCACAAAACTCACTCTTCCACGCGCTATGTGGCGACGTGTCAAAGCAACTG 42597
|||||||| || || ||| || ||||| ||| |||| ||| || || || ||
Sbjct 810 CGGACATTACCGCAGAACGACCTGTTCCATGCGTTATGCACCGATGTTTCGCGTCAGGTG 869
Query 42598 CAATGGGCAGGGAAGCGCCGGAACCTCTCGGAATGGAAGGTTCTGTTTGTCTCCGGGCAT 42657
||||| | || | ||| || ||| ||||| | |||||||| || || |||
Sbjct 870 GTGTGGGCCGATAAACCCCGCCCGCTGCTGGACTGGAAAGCGCTGTTTGTTTCGGGACAT 929
Query 42658 GCGGTCGCAACTGGCAAACCCGGTGAAGTTGTGCCGGGTATTGAGGGAGAGTTCTGCGCC 42717
|| |||| || |||| || || || || ||| |||| | ||||| ||||| ||| |
Sbjct 930 GCCATCGCTACCGGCAGGCCGGGGGAGGTGGTGACGGGGCTGGAGGGGGAGTTATGCAGC 989
Query 42718 ATCCGAGAAAGCACCTCGAAGATGGGCATTAAGCGCATGAACAGCCTGATTGAGTACACG 42777
||||| || ||||| | |||||||| | |||||||||||||| |||||||||| |
Sbjct 990 ATCCGCGAGAGCACGGCTCAGATGGGCGTAAAGCGCATGAACAGTTTGATTGAGTATGCC 1049
Query 42778 CAGGCCT-TTGCCGTAGGCAATGGCGTTCAGCTCCGCGAAGTGCGCTAT 42825
||| ||| | | || ||| | ||||| || || || ||||| |||
Sbjct 1050 CAGCCCTGGTTCGGTCGGCTACGGCGTCAGGCGGCGGGAGGTGCGTTAT 1098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 158490470023572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |