Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq3409 796 0.0 seq8203 105 2e-18 seq7786 95.1 3e-15 seq4809 89.7 1e-13 >seq3409 Length=8325 Score = 796 bits (882), Expect = 0.0 Identities = 1152/1607 (72%), Gaps = 34/1607 (2%) Strand=Plus/Plus Query 8 TTTAACGCTAACCCGAtttttttAGTTTT-AAGGTGTTGACATATGGCAGATAAACGAAT 66 ||||||||||||||||||||||||||||| |||||| | || |||||||| ||||||| Sbjct 6596 TTTAACGCTAACCCGATTTTTTTAGTTTTCAAGGTGCTCTCAAATGGCAGAAAAACGAAA 6655 Query 67 CCGTTCCGACAGTTCGGCGGCAGCGGTTCAGGCCATGAAAAATGCAGCTGTGGACACCAT 126 ||| || |||||| || |||| ||| | ||||||||||||||||| | | ||||||| | Sbjct 6656 CCGCTCTGACAGTGCGACGGCGGCGATCCAGGCCATGAAAAATGCGACCGGGGACACCCT 6715 Query 127 CGATCCGCCGTCCCATGCAGGTTTGGAGAAAAAAGCCGAACCATTCTGGCATGACAATAT 186 | || ||| | || || |||||||| ||||||||||| || || |||||||||||||| Sbjct 6716 TCAGCCCCCGGCGCACGCGGGTTTGGAAAAAAAAGCCGAGCCTTTTTGGCATGACAATAT 6775 Query 187 CAGATCGAAAGCTCTGGACAGCTGGACGCCTGCCGACCTTCTAGCCGCCGTAGAACTTGC 246 |||| ||||| |||| |||||||| || || ||||| ||||||| || || || || Sbjct 6776 TCGATCCAAAGCATTGGATAGCTGGACACCCGCTGACCTGTTAGCCGCTGTTGAGCTGGC 6835 Query 247 TAATAATCAGCTCTATATCACCGTTTTACGCAAGGATTTACGCAAAGAAGAGCGCATACG 306 |||||||| | |||||||| | | ||||| |||||||| || ||||||||| | || Sbjct 6836 AAATAATCAACACTATATCAACATGTTACGGCGTGATTTACGTAACGAAGAGCGCGTGCG 6895 Query 307 CGGGGAGGAGCGAGACGAAGGCCTT---ATAAAAGACCTCCGCAAGCAAATTGTTGAGCT 363 ||| |||| | || || | || || || ||||| | ||||| ||||| || || | Sbjct 6896 CGGTGAGGCGAGAAAC-ATGG--TTGAAATTAAAGAATTGCGCAAACAAATCGTAGAATT 6952 Query 364 ACAACGAACTATCCTGGCTCAGCGCCGCGACCTCCAGATCCACTCCCACGCAACCAACGG 423 ||| || | || |||| ||||| || || || || ||||| |||||||| |||||||| Sbjct 6953 ACAGCGCGCGATTTTGGCACAGCGACGAGATCTGCAAATCCATTCCCACGCTACCAACGG 7012 Query 424 CGAAAGTCGCGACCAGAAGAAACGTAATCAG-AACGATCGTGATGCACGGAATACCAAAA 482 ||||| ||||||||| | ||| || ||| || || | | || | | || | Sbjct 7013 TGAAAGCCGCGACCAGC-GTAACAAAAACAGGAATGACAGGAACGCCAGAAGCACGGTCA 7071 Query 483 ACGAGCATCAGGACCAGGACGATAACCTGATCGCCTTTCCCAAGCACGGATAAAAGACT- 541 | ||||| | | |||||||| |||||||| ||||| || || ||| | | Sbjct 7072 GTGGTCATCAACGCGAAGACGATAATCTGATCGCGTTTCCAAAACAT---TAAGGGGCAT 7128 Query 542 --ATGACGCGAGGTGAGCGTGTAATAGCGTTCATTGAGCGCTTTTGCATCGTGCCAGAAG 599 ||||||||||||||||| || ||||||||||||||||||| |||||| ||||| |||| Sbjct 7129 TCATGACGCGAGGTGAGCGCGTGATAGCGTTCATTGAGCGCTATTGCATTGTGCCGGAAG 7188 Query 600 GCAAGCTTATCGGCCAACCTATGCGGTTGGACCCCTTTCAGAAAGATTTCATCCTGGCGG 659 ||||| ||||||| || || ||| | | || ||| |||||||| || | || | | Sbjct 7189 GCAAGTTTATCGGACAGCCGATGAAGCTTGATGGCTTCCAGAAAGACTTTCTGCTTGATG 7248 Query 660 TTTACGACAATCCAGCCGGAACGGATATGGCGATCCTCAGCATCGCCCGAAAAAATGGTA 719 | || ||||| || | || || | ||| || | |||||||||||||| || || | Sbjct 7249 TCTATGACAACCCGGTGGGCACCAGCAGGGCAATTTTAAGCATCGCCCGAAAGAACGGGA 7308 Query 720 AGACTGGCCTGATTGCCGGAATTCTGCTGGCTCACCTGGTGGGGCCTGAAGCGGTGCAGA 779 | || || | ||||| ||||| || || ||||||||||| || || ||||||||||| | Sbjct 7309 AAACCGGGTTAATTGCTGGAATACTTCTTGCTCACCTGGTTGGCCCAGAAGCGGTGCAAA 7368 Query 780 ACACGCAGATTGTCAGCGGTGCACTCAGCCGGGAACAGGCGGCCATCGTTTTTAACCTCG 839 || | ||||| ||||| || || | ||||| || ||||| || | || |||| ||| Sbjct 7369 ACTCTCAGATCGTCAGTGGGGCGATGAGCCGAGAGCAGGCTGCGCTGGTCTTTAGCCTGT 7428 Query 840 CGGTGAAGATGGTTAACCTGAACCCCAAGCTGCAGGAGATTGTGCACATTACGCCCAGCG 899 |||| || ||| |||| || |||||| ||| ||||| |||||||| || | ||||||| Sbjct 7429 CGGTCAAAATGATTAATCTTAACCCCGCGCTACAGGACATTGTGCATATCATTCCCAGCG 7488 Query 900 GCAAAAAGCTGATCGGCCTGCCGTGTAACGTCGAATACAAGGCTTTATCCGCAGAAGGTA 959 | || |||||| || || ||||| || || |||||||| | |||| || |||| Sbjct 7489 GTAAGCGGCTGATTGGTACCCCTTGTAATGTTGAGTACAAGGCGCTGGCCGCCGAGGGTA 7548 Query 960 AGACGACGCACGGCCTTTCCCCCATTCTGGCCATTCTCGATGAAACAGGGCAGGT--TAG 1017 | || | ||||| ||||| || | ||||||||||| |||||| |||||||| ||| Sbjct 7549 AAACCGCACACGGTCTTTCTCCAGTGCTGGCCATTCTGGATGAAGTGGGGCAGGTAGTAG 7608 Query 1018 GGGCCCGCAGGATGATTTTATCGATGCAATAACTACGGCGCAGGGGGCTCATGAAAACCC 1077 | | ||||| ||||||| | || || || ||| | || ||||| ||||| | || Sbjct 7609 GTCCGCGCAG--TGATTTTGTTGACGCCATTGTTACCTCACAAGGGGCGCATGAGACACC 7666 Query 1078 GCTGCTAATCGTTATCAGTACGCAGGCAGCAAACGATGCTGACCTGCTTAGCATCTGGAT 1137 |||| || | ||||||||| ||||| || ||||| || |||||| | ||| | ||||| Sbjct 7667 TTTGCTGATTGCTATCAGTACCCAGGCGGCCAACGACGCCGACCTGTTGAGCGTGTGGAT 7726 Query 1138 TGATGATGCGGTCAAATCGAAAGATCCGCACATCGTGTGCCACGTTTATGAAGCGCCAAA 1197 |||||| |||| | || ||||| || || || ||||| || || || ||| Sbjct 7727 TGATGACGCGGCAACTTCTGGCGATCCACATATTGTTTGCCATGTGCATACTGCCGAAAA 7786 Query 1198 AGACGCTGATATCAGTAAACGCGAGTCCTGGCTGGCTGCGAACCCGGCACTGGGAACATT 1257 |||||| || || | | || | | |||| || || || ||||| ||||||| || Sbjct 7787 AGACGCCGACATTATGGATCGGGCTGCATGGCGTGCCGCTAATCCGGCGTTGGGAACCTT 7846 Query 1258 CAGGTCAGAAAAAGACATGGCGCGCCAGGCTGAGAAAGCTGGCCGA--ATGCCAAGCTTC 1315 | ||| | || |||| ||||| ||| || | || | ||| ||||| ||| Sbjct 7847 TCGTTCACTGGACGAGATGGAGCGCCGGGCAGAAGAGGC--GACGAGGATGCCCAGCAGT 7904 Query 1316 GAAAACACCTTCCGAAACCTCAACCTCAATCAGCGCGTGTCTACCGTATCGCCGTTTATC 1375 ||||| ||||| || || ||||| || ||||||||||| || || || || ||||| || Sbjct 7905 GAAAATACCTTTCGTAATCTCAATCTAAATCAGCGCGTATCCACTGTGTCACCGTTCGTC 7964 Query 1376 TCCCGCAGCGTGTGGG-AGC---TTTGCGGA--GAGAT---GCCGATTAACACCCCGAGG 1426 ||||| | || |||| ||| | | | || || || ||| | | || Sbjct 7965 TCCCGTAATGTTTGGGAAGCCAGTATTCTGAAGGACATTCGTCCGGGCATGATTGTTGGG 8024 Query 1427 AAGTGGTACGCGGGGCTGGATCTGTCAGCCAGGAACGACTTAACGGCGCTGGTTATCGCT 1486 |||| ||||||||||| || ||||||| | ||||||| | || |||||||| || | Sbjct 8025 GAGTGCTACGCGGGGCTCGACCTGTCAGAAAAGAACGACCTTACCGCGCTGGTGATTGTG 8084 Query 1487 GGTGAAGCAGATGATGGTGTCTGGGATGTTTTCCCCTTCTTCTGGACACCGCAAAAGACT 1546 || | | | || | | |||| || ||||| ||||||||||||||| ||||| Sbjct 8085 GGACAGGATAAAGAGCGCGACTGGCTGGTATTCCCGTTCTTCTGGACACCGGGTAAGAC- 8143 Query 1547 CTTG-AAGAGCGAACCAAAACGGACCGAGCACCCTATGACGTTTGGG 1592 |||| || || ||| || || || || ||||| ||||||| Sbjct 8144 CTTGCTCGACCGGGCCAGGCGAGATCGCGCCCCTTATGATGTTTGGG 8190 Score = 120 bits (132), Expect = 7e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 36059 ATGTGCGAGCAGCAGGGGCGCATAACACCAGCAACGGTGGTCGACCATATCGTGCCCCAC 36118 |||||| | ||||||| || |||||||| || || || ||||| ||| | || ||| Sbjct 6264 ATGTGCCACGAGCAGGGACGGATAACACCCGCTGTCGTTGTTGACCACATCATTCCGCAC 6323 Query 36119 AAACTGAAAGATGCGCTTAAGTCAGGTAACCCTCTGGCCATATCGAAAGCACAGCTCCTG 36178 ||||| ||||| ||| | ||||| || || ||| ||| | || ||||| | Sbjct 6324 AAACTTAAAGAAGCGTTGAAGTCTGGCGACAAGGCGGCGATAGCAAAGGCACAAACATTA 6383 Query 36179 TTCTGGAGTAAAGAGAACTGGCAGCCACTGTGCAAAGCGCATCATGACTCAACGAAACAG 36238 ||||||| |||||||||||||||| ||||||| ||||||| || || ||||| Sbjct 6384 TTCTGGAATAAAGAGAACTGGCAGGGACTGTGCGTCCCGCATCACTCATCGACTAAACAA 6443 Query 36239 AGAATGGAGAAGAGCGGCGCGGTAATCGGTTGTGATGCCAACGGCTACCCGCTCGATCC 36297 |||||||| ||| | | | ||| ||||| || |||| || || || |||||||| Sbjct 6444 AGAATGGAAAAGCGGGACAAGGTCATCGGCTGCGATGAGAATGGTATGCCTCTCGATCC 6502 >seq8203 Length=1368 Score = 105 bits (116), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 24771 TACAGATACCGACCGATTCCCCACTGAACGGCAGCGCGCTTCATTGCACCGGAACGACCA 24830 || ||||| |||||||| |||||||||| || || |||||||||| || || ||| Sbjct 385 TAGAGATATCGACCGATCCCCCACTGAAAAGCTGCTCGCTTCATTGAGCCAGACATGCCA 444 Query 24831 CCTTTGACGGCTTCTACCTGCGTGTTTTCAGCAGCATCCCATTTGGTTACCCATTCGGAA 24890 || || || || || ||||| || || || || | ||||| || |||||||| || | Sbjct 445 CCCTTAACCGCCTCCACCTGTGTTTTATCTGCGCCGTCCCACTTCGTTACCCACTCATCA 504 Query 24891 TCAATCTTTATTGATATGCCGCATTCAACGCCGCCGTT--GTTGGGAATATCGCGGTATT 24948 ||| || ||||||| || ||||||||| | || || | | | ||| Sbjct 505 CGAATACGAATGAATATGCCACACATAACGCCGCCATCAGGTCCGGGAGA-----GAATT 559 Query 24949 CATTGCGCCA-TCCTGCTTTGCCGCAAACATCGTCCAGGCGTTTCATGATTGCCCG 25003 |||| ||| | || |||| || ||||| |||||||| ||||||||||| ||||| Sbjct 560 CATTTTTCCAATTCT-CTTTTCCACAAACGTCGTCCAGTCGTTTCATGATGGCCCG 614 >seq7786 Length=1398 Score = 95.1 bits (104), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 35405 AACCGCGCATTCTCGTGCGCATATCAACCAAGAGCTTTTCGGGATATGAGACAGAGACAG 35464 ||||| |||||| ||||| | | | | |||||||| || | |||| | ||| ||| Sbjct 1392 AACCGTGCATTCGCGTGCACTTCACTAG--AGAGCTTTCCGTAGTGTGAGTCTGAGGCAG 1335 Query 35465 GACGGTGGCTTACATCGTGCCGCTCTTGGGCTGTCCATGTCTGCGAGAACTGGCTCATAT 35524 | |||||| | || |||| ||||||| || ||| |||||||| || |||| ||||| | Sbjct 1334 GGCGGTGGATCACCTCGTTCCGCTCTCGG-CTGCCCATGTCTACGCGAACAGGCTCGCAC 1276 Query 35525 CACCAAAAAGGTAAATACGATGTCCAATATC 35555 ||| | ||||||||||||||| ||||||| Sbjct 1275 CAC--AGAAGGTAAATACGATG--CAATATC 1249 >seq4809 Length=3389 Score = 89.7 bits (98), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 32247 GGAGGCTGCTTAATGGCTAACCTACGCAAAGAAGCACGCGGCAGAGAATGCCAGGTACGT 32306 ||||| ||| ||||| || || ||||| || | ||| |||| || ||||| | Sbjct 572 GGAGGTAGCT--ATGGCGAATCTTAAAAAAGAGGCCAGAGGCCGAGAGTGTCAGGTGAGG 629 Query 32307 ATTTACGGCGTATGCAATGGCAACCCTGAAACTACAGTTCTGGCACATTACCGGATGGCT 32366 | | || | || || || ||| ||||||| ||| ||||| ||||||| ||| | Sbjct 630 CTCTCGGGTATCTGTAACGGTAACACTGAAACCGTAGTGCTGGCCTATTACCGAATGTCC 689 Query 32367 GGAATTTGCGGAACGGGAATGAAGCCTGACGACCTGATCGGCGCATGG 32414 || |||||||| || || ||||||||||||||||| | ||||||||| Sbjct 690 GGCATTTGCGGCACAGGCATGAAGCCTGACGACCTTTTTGGCGCATGG 737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117170585887062