Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq10505 248 3e-61 seq2192 244 4e-60 seq1601 197 5e-46 >seq10505 Length=1270 Score = 248 bits (274), Expect = 3e-61 Identities = 226/285 (79%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 37231 TTCCAGTCCCTTGCCGACGGCGTGCCCCACCCAGTACGTCCGGTCTCGGATGTGCGGGGC 37290 |||| ||||| | | |||||| |||||||||||| |||||| ||||| |||||||| Sbjct 287 TTCCCGTCCCGCGTGGTCGGCGTAGGCCACCCAGTACGCCCGGTCGCGGATATGCGGGGC 228 Query 37291 ACCGACGCCCGCAGACGGGAACGCAACAGCCCCGAAGGCATACTCCATGGCTTCCAGGTC 37350 |||||||||||||||||| |||| ||| ||||||||| || |||| |||||||||||| Sbjct 227 ACCGACGCCCGCAGACGGAAACGGCACACACCCGAAGGCGTAGTCCACGGCTTCCAGGTC 168 Query 37351 AGCTTGTACAAGGTCGAGCCAAGGCTCCGCGTCCTTGCTTGCAACCTGCTCACCAAGGAC 37410 ||| ||||||||||||| ||| | | || | ||||||||||||| ||||||| || Sbjct 167 AGCCTGTACAAGGTCGAACCAGAGGTTTGCATGGCTGCTTGCAACCTGTTCACCAAAAAC 108 Query 37411 TTCTCCAGGGCGGCGCTGGCGGATGAGCCAGGCAAAATGTGGCCAGAGATGACGCGGGTC 37470 | ||||||||| ||||| |||||||||| |||| ||||||||||| ||| ||| Sbjct 107 GTACTCAGGGCGGCACTGGCTGATGAGCCAGTGAAAAGCGGGCCAGAGATGCCGCTCGTC 48 Query 37471 ATCAAACCCAGCTCCTTCGCCTGCCGAGGAGAAAGGTTGGCAAGG 37515 || |||||| | || | |||||||| | |||||| ||||| || Sbjct 47 ATAAAACCCGCCGCCCTTGCCTGCCGCGCTGAAAGGCTGGCAGGG 3 Score = 187 bits (206), Expect = 9e-43 Identities = 142/168 (85%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 36867 CTATGAACTGCGTCGCCGCTTCAGCATTGATGGCGTTTCCGTAGGCGCGCAGGCGTCCCA 36926 |||||||| | ||||| || | ||||| |||||||||||||||||||| ||||||| Sbjct 528 CTATGAACGCTTTTGCCGCCTCCACGTTGATAGCGTTTCCGTAGGCGCGCAGTCGTCCCA 469 Query 36927 CTCGGGAGGGAGCCCCATGAGCCAGCGGGAATGTGCCGGGTTCAACTGGCCGCCACTTTC 36986 | ||| || | |||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 468 CGCGGTTGGTAACCCCATAAGCCAGCGGGAATGCGCCGGGTTCAACTGGCCGCCACTTTT 409 Query 36987 CATCCCGGCAGAAGATCCAGTCAGCATCTGCCCAGAGGCCGTTAACCG 37034 |||||||||| | || ||||||||| ||| ||||| ||||||||||| Sbjct 408 CATCCCGGCACAGGAGCCAGTCAGCCTCTCGCCAGAAGCCGTTAACCG 361 >seq2192 Length=16777 Score = 244 bits (270), Expect = 4e-60 Identities = 225/285 (79%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 37231 TTCCAGTCCCTTGCCGACGGCGTGCCCCACCCAGTACGTCCGGTCTCGGATGTGCGGGGC 37290 |||| ||||| | | |||||| |||||||||||| |||||| ||||| |||||||| Sbjct 16492 TTCCCGTCCCGCGTGGTCGGCGTAGGCCACCCAGTACGCCCGGTCGCGGATATGCGGGGC 16551 Query 37291 ACCGACGCCCGCAGACGGGAACGCAACAGCCCCGAAGGCATACTCCATGGCTTCCAGGTC 37350 |||||||||||||||||| |||| ||| ||||||||| || |||| |||||||||||| Sbjct 16552 ACCGACGCCCGCAGACGGAAACGGCACACACCCGAAGGCGTAGTCCACGGCTTCCAGGTC 16611 Query 37351 AGCTTGTACAAGGTCGAGCCAAGGCTCCGCGTCCTTGCTTGCAACCTGCTCACCAAGGAC 37410 ||| ||||||||||||| ||| | | || | ||||||||||||| ||||||| || Sbjct 16612 AGCCTGTACAAGGTCGAACCAGAGGTTTGCATGGCTGCTTGCAACCTGTTCACCAAAAAC 16671 Query 37411 TTCTCCAGGGCGGCGCTGGCGGATGAGCCAGGCAAAATGTGGCCAGAGATGACGCGGGTC 37470 | ||||||||| ||||| |||||||||| |||| ||||||||||| ||| ||| Sbjct 16672 GTACTCAGGGCGGCACTGGCTGATGAGCCAGTGAAAAGCGGGCCAGAGATGCCGCTCGTC 16731 Query 37471 ATCAAACCCAGCTCCTTCGCCTGCCGAGGAGAAAGGTTGGCAAGG 37515 || |||||| | || | |||||| | | |||||| ||||| || Sbjct 16732 ATAAAACCCGCCGCCCTTGCCTGCTGCGCTGAAAGGCTGGCAGGG 16776 Score = 187 bits (206), Expect = 9e-43 Identities = 142/168 (85%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 36867 CTATGAACTGCGTCGCCGCTTCAGCATTGATGGCGTTTCCGTAGGCGCGCAGGCGTCCCA 36926 |||||||| | ||||| || | ||||| |||||||||||||||||||| ||||||| Sbjct 16251 CTATGAACGCTTTTGCCGCCTCCACGTTGATAGCGTTTCCGTAGGCGCGCAGTCGTCCCA 16310 Query 36927 CTCGGGAGGGAGCCCCATGAGCCAGCGGGAATGTGCCGGGTTCAACTGGCCGCCACTTTC 36986 | ||| || | |||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 16311 CGCGGTTGGTAACCCCATAAGCCAGCGGGAATGCGCCGGGTTCAACTGGCCGCCACTTTT 16370 Query 36987 CATCCCGGCAGAAGATCCAGTCAGCATCTGCCCAGAGGCCGTTAACCG 37034 |||||||||| | || ||||||||| ||| ||||| ||||||||||| Sbjct 16371 CATCCCGGCACAGGAGCCAGTCAGCCTCTCGCCAGAAGCCGTTAACCG 16418 >seq1601 Length=30922 Score = 197 bits (218), Expect = 5e-46 Identities = 347/506 (69%), Gaps = 14/506 (3%) Strand=Plus/Plus Query 37249 GGCGTGCCCCACCCAGTACGTCCGGTCTCGGATGTGCGGGGCACCGACGCCCGCAGACGG 37308 ||||| |||||||||| || | |||| ||||||| ||||||| |||||||| Sbjct 15120 GGCGTCGGCCACCCAGTAAAGTCGTTGTCGGCTGTGCGGCGCACCGAAGCCCGCAGCGCA 15179 Query 37309 GAACGCAACAGCCCCGAAGGCATACTCCATGGCTTCCAGGTCAGCTTGTACAAGGTCGAG 37368 || ||| || | ||| || | | |||||||||||| |||||||||||||| Sbjct 15180 TAAATCAAGCGCTGCTGTGGCGTAGTTCTCTGCTTCCAGGTCAATCTGTACAAGGTCGAG 15239 Query 37369 CCAAGGCTCCGCGTCCTT----GCTTGCAACCTGCTCACCAAGGACTTCTCCAGGGCGGC 37424 ||||| || |||| | |||||||||||||||||||| || | |||| || Sbjct 15240 CCAAG----CGAGTCCGTCAGGGCTTGCAACCTGCTCACCAAAGATAACGTCAGGTTTGC 15295 Query 37425 GCTGGCGGATGAGCCAGGCAAAATG-TGGCCAGAGATGACGCGGGTCATCAAACCCAGCT 37483 ||| ||||||| || | || | ||||| | | ||| |||| |||| || | Sbjct 15296 ACTGCTGGATGAG-GTGGAAGAACGCGGGCCATAAGCGCCGCTCGTCAGCAAATCCCTTT 15354 Query 37484 CCTTCGCCTGCCGAGGAGAAAGGTTGGCAAGGACAGGAACCGGTCCAAACAGGTCGATCA 37543 || | |||||||| | |||||| ||||| ||||| || ||||| || ||| |||| Sbjct 15355 CCCTTGCCTGCCGGGCTGAAAGGCTGGCACGGACAACTGCCTGTCCACACGGGTTTATCA 15414 Query 37544 TCTGGCCAGCCGGCGCGGCGAAGGGCGAGCGACCAGACGCCGATTCCCGCGAAGAAGTGG 37603 || ||||||| | || |||||| |||||| ||||||||| |||||||| || Sbjct 15415 TCGGGCCAGCACACTTTTCGCAGGGCGTATGACCAGGTGCCGATTCCGGCGAAGAAATGA 15474 Query 37604 CATTGTGTGTAGTGCTTGAGGTCATCTGGGTGAACATCCTCGANNNNNNNNNNNNNNNNC 37663 || || |||||| || | ||||| || | || ||||||| | Sbjct 15475 CACTGGGTGTAGCTCTGTAACTCATCGGGTTTAATCTCCTCGA----TTGAACGTTCATC 15530 Query 37664 GACGTCGCCAGGTGCTATGTGGCCGGCGGCGATCAGGTTTCGAAGCCACTGAGCGGCATA 37723 ||| || ||||| || || || |||||||| ||||||||||| |||||||| | |||| Sbjct 15531 GACATCACCAGGCGCAATATGCCCGGCGGCCATCAGGTTTCGCAGCCACTGCCCCACATA 15590 Query 37724 TGGGTCGAATTCGTTGTAGTAGGCGC 37749 ||||| ||||| || |||||| Sbjct 15591 GGGGTCAGTGTCGTTATACCAGGCGC 15616 Score = 156 bits (172), Expect = 1e-33 Identities = 118/139 (85%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 36890 GCATTGATGGCGTTTCCGTAGGCGCGCAGGCGTCCCACTCGGGAGGGAGCCCCATGAGCC 36949 ||||||| || || |||||||||||||| |||||||||| | || | ||||| |||| Sbjct 14749 GCATTGAGGGTATTACCGTAGGCGCGCAGTCGTCCCACTCTGTTGGTAATCCCATCAGCC 14808 Query 36950 AGCGGGAATGTGCCGGGTTCAACTGGCCGCCACTTTCCATCCCGGCAGAAGATCCAGTCA 37009 |||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||||| Sbjct 14809 AGCGGGCGTGTGCCGGGTTCAACTGGCCGCCATTTTCCATCCCGGCAGCAGAGCCAGTCA 14868 Query 37010 GCATCTGCCCAGAGGCCGT 37028 || ||| ||||| ||||| Sbjct 14869 GCCTCTCGCCAGAAGCCGT 14887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172721274873684