Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq2784 297 6e-76 seq1206 264 4e-66 seq3409 259 2e-64 seq4809 91.5 5e-14 seq5862 84.2 7e-12 >seq2784 Length=12453 Score = 297 bits (328), Expect = 6e-76 Identities = 340/453 (75%), Gaps = 3/453 (1%) Strand=Plus/Plus Query 28759 TCCTTCACAAAAATAATCCAGTGGGTTTTATCGTTCTTGCCGGTGCGCTGGCCAATAATT 28818 ||||| | | | || |||||||| || ||||| ||| || |||||||||||||| || Sbjct 4819 TCCTTGAGATAGATGATCCAGTGAGTCTTATCAGACTTCCCTGTGCGCTGGCCAATCATA 4878 Query 28819 GGTTTTACGTCCGTCAGCGCCAGAATCTGGCTTACCGGAATCTGCGTTTCGTTCCACTTG 28878 ||||| |||| |||| ||| || |||||||| || ||||| ||||||||||| ||| Sbjct 4879 GGTTTCGCGTCGGTCAATGCCGTAACTTGGCTTACTGGGATCTGAGTTTCGTTCCATTTG 4938 Query 28879 AAAATGAGAACACCGTGTGGCCGCAATACGCGGAATGCCTCTTTGAATCCGGCGCGGAGG 28938 ||||| || |||| | || |||| ||| ||||| ||||| ||| |||||||||| | Sbjct 4939 AAAATCAGCACACTCAGCGGGCGCAGTACACGGAACGCCTCAACGAAACCGGCGCGGATG 4998 Query 28939 TCAGAACGCCATGTTTTTT-ATTCAG-GCGTCCGTATTTTTTACCCATCCAGGCGTTATC 28996 ||| ||||||||| | |||||| ||| |||||||| || | |||||| ||||| || Sbjct 4999 TCATCACGCCATGTCTCACGATTCAGTGCG-CCGTATTTCTTGCGCATCCATGCGTTTTC 5057 Query 28997 ACCAACTCGCTCAAGATGCGGAGGGTCAAACACCACAACCGGAAAAGAAGAATCAGCGAA 29056 ||| | || ||||||||| || || || || || |||| ||| ||| || | ||| Sbjct 5058 ACCGATTCTCTCAAGATGTGGCGGATCGAAAACGACAATCGGGAAATGGTTGTCGGGGAA 5117 Query 29057 CGGCAGTGAACGAAAGTCGGCAATGAGGTCAGGACTGATAACCAGGCTGCGACCGTCGCA 29116 ||||| || || || || |||| |||||| ||||||| || | | ||| ||||| Sbjct 5118 TGGCAGGTTGCGGAAATCAGCGATGATGTCAGGGCTGATAATCAACTTTCTACCATCGCA 5177 Query 29117 CAATATATGCTCCTCGTCGCGGATATCGGCGAATACGGCGCGTTCATCGCGCTTATTAAA 29176 || | || | |||| ||| ||||||| ||| || || |||| ||| |||| | || Sbjct 5178 CAGCGTGTGGTTCTCGCTGCGAATATCGGTGAACACAGCTCGTTTATCTTGCTTGTCGAA 5237 Query 29177 CCAGAACATGCGCGAGCCGCAGCACATATCCAG 29209 |||||||||||| |||||||||||||||||||| Sbjct 5238 CCAGAACATGCGAGAGCCGCAGCACATATCCAG 5270 >seq1206 Length=31275 Score = 264 bits (292), Expect = 4e-66 Identities = 269/351 (77%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 47769 GGCGCGTCTGGAGTACAAGCCTATGACCGATGCCATCAAGCATGAGCGTGAGGCGCAGGG 47828 ||| || || |||||| || ||||||||||||||||||| ||||||||||| ||||| Sbjct 17100 GGCCCGGCTTGAGTACCGCCCATTGACCGATGCCATCAAGCACGAGCGTGAGGCACAGGG 17159 Query 47829 TAAGCAGATCGCCCCGCATCACTTCAGCAACGAAGCTGACCTGATTAATCGACTGGCGCT 47888 || | || ||||| |||||||||||||||||||||||||||||||| || | || || Sbjct 17160 GAAAAACATTGCCCCTCATCACTTCAGCAACGAAGCTGACCTGATTAACCGCATTGCACT 17219 Query 47889 GGGCATGACGGCGGCCAAGTTCCGCGTGCATCACGAAATCGGGAAGAAAGAGCCGATCCG 47948 ||| ||||| | || || || || || || || ||||| || |||||||| | |||| Sbjct 17220 GGGTATGACATCCGCAAAATTTCGAGTCCACCATGAAATAGGTAAGAAAGAATCTCTCCG 17279 Query 47949 CGATTACCTGACGCCGGAACAAATTCACTGCATCACCGAGCTACAGCGCGCCAACACGGT 48008 || || |||||||| || || || |||||||| ||||| || || ||||| || ||||| Sbjct 17280 TGACTATCTGACGCCAGAGCAGATCCACTGCATTACCGAACTGCAACGCGCTAATACGGT 17339 Query 48009 ATTCATCAGCATGGGGTGGGACTTCGAACAACGCAAAGAAGTGCTGCGCGGCATGTTCGA 48068 |||||| |||||| ||||||||||| |||||||||| |||| || || ||| | Sbjct 17340 ATTCATTGGCATGGAATGGGACTTCGAGCAACGCAAAGCCACGCTGATGGGAATATTCAA 17399 Query 48069 GCGTAATCACCGCCAGCCACTTATCGAAGAGCAGCACCGCTTGGCCGCATA 48119 || || ||||| || || || ||||| || ||||| |||| || || Sbjct 17400 CAAAAACCATCGCCAACCGCTGATTGAAGAACAACACCGACTGGCGGCTTA 17450 >seq3409 Length=8325 Score = 259 bits (286), Expect = 2e-64 Identities = 268/351 (76%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 47769 GGCGCGTCTGGAGTACAAGCCTATGACCGATGCCATCAAGCATGAGCGTGAGGCGCAGGG 47828 ||| || || |||||| || ||||||||||||||||||| ||||||||||| ||||| Sbjct 4574 GGCCCGGCTTGAGTACCGCCCATTGACCGATGCCATCAAGCACGAGCGTGAGGCACAGGG 4633 Query 47829 TAAGCAGATCGCCCCGCATCACTTCAGCAACGAAGCTGACCTGATTAATCGACTGGCGCT 47888 || | || ||||| |||||||||||||||||||||||||||||||| || | || || Sbjct 4634 GAAAAACATTGCCCCTCATCACTTCAGCAACGAAGCTGACCTGATTAACCGCATTGCACT 4693 Query 47889 GGGCATGACGGCGGCCAAGTTCCGCGTGCATCACGAAATCGGGAAGAAAGAGCCGATCCG 47948 ||| ||||| | || || || || || || || ||||| || ||||||| | |||| Sbjct 4694 GGGTATGACATCCGCAAAATTTCGAGTCCACCATGAAATAGGTAAGAAAGGATCTCTCCG 4753 Query 47949 CGATTACCTGACGCCGGAACAAATTCACTGCATCACCGAGCTACAGCGCGCCAACACGGT 48008 || || |||||||| || || || |||||||| ||||| || || ||||| || ||||| Sbjct 4754 TGACTATCTGACGCCAGAGCAGATCCACTGCATTACCGAACTGCAACGCGCGAATACGGT 4813 Query 48009 ATTCATCAGCATGGGGTGGGACTTCGAACAACGCAAAGAAGTGCTGCGCGGCATGTTCGA 48068 |||||| |||||| ||||||||||| |||||||||| |||| || || ||| | Sbjct 4814 ATTCATTGGCATGGAATGGGACTTCGAGCAACGCAAAGCCACGCTGATGGGAATATTCAA 4873 Query 48069 GCGTAATCACCGCCAGCCACTTATCGAAGAGCAGCACCGCTTGGCCGCATA 48119 || || ||||| || || || ||||| || ||||| |||| || || Sbjct 4874 CAAAAACCATCGCCAACCGCTGATTGAAGAACAACACCGACTGGCGGCTTA 4924 >seq4809 Length=3389 Score = 91.5 bits (100), Expect = 5e-14 Identities = 241/363 (66%), Gaps = 10/363 (3%) Strand=Plus/Plus Query 41700 TCAAATCAAATACGCCAGCACACGACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTG 41759 |||||||| | || | || | |||||||| |||| ||| |||| | | ||| Sbjct 71 TCAAATCACACACCAGACCAGAGCACAAGGACACATGGCGAACCCCGCCCGAGGTCTTTC 130 Query 41760 ATGCACTGGATATTGAGTTTGGATTCTGGCTGGATTCGGCAGCGAGCGATAAAAACGCTC 41819 | || |||||| |||||||| |||| || ||| | || ||| | | | || | | Sbjct 131 AGGCGCTGGATGCGGAGTTTGGCTTCTACCTCGATGCCGCCGCGGACCACGACAATACCC 190 Query 41820 TGTGCGCTCACTGGCTAACTGAGGCC----GACGACGCGCTCAATTCTGAGTGGATAAGC 41875 |||| || || || |||| ||| || || || || | ||| |||| ||| Sbjct 191 TGTGTCGTC--TG--TATCTGACGCCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGC 246 Query 41876 CACGGTGCAATCTGGAATAACCCACCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCC 41935 ||| || |||| || || ||||||||||||||| | || ||||| || ||||| Sbjct 247 ACCGGCGCCATCTTCTGCAATCCCCCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCT 306 Query 41936 GCTGAGCAGTGCATACAACAGCGACAGACGGTAGTGATGCTTGTGCCAGAGGATATGTCT 41995 ||||||||| || | ||| | ||||| || ||||| |||| | ||||| || Sbjct 307 GCTGAGCAGAGCCGCAAGCAGAATAAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCG 366 Query 41996 GTCGGATGGTTCAGCA-AGGATCTGGAGAGTGTTGACGAAGTTCGCATCATCACTGATGG 42054 ||||||||| ||| || || | | | ||||| || || ||| ||||||| || || Sbjct 367 ACGGGATGGTTC-GCACTGGCTCAGAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGG 425 Query 42055 ACG 42057 || Sbjct 426 GCG 428 >seq5862 Length=3465 Score = 84.2 bits (92), Expect = 7e-12 Identities = 225/339 (66%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 41724 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 41783 |||||||| |||| ||| |||| | | || | || |||||| |||||||| | Sbjct 23 ACAAGGACACATGGCGAACCCCGCACGAGGTCTTCCAGGCGCTGGATGCGGAGTTTGGCT 82 Query 41784 TCTGGCTGGATTCGGCAGCGAGCGATAAAAACGCTCTGTGCGCTCACTGGCTAACTGAGG 41843 ||| || ||| | || ||| | | | || | ||||| || || || |||| | Sbjct 83 TCTACCTCGATGCCGCCGCGGACCACGACAATACCCTGTGTCGTC--TG--TATCTGACG 138 Query 41844 CC----GACGACGCGCTCAATTCTGAGTGGATAAGCCACGGTGCAATCTGGAATAACCCA 41899 || || || || || | ||| |||| ||| ||| || |||| || || Sbjct 139 CCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGCACCGGCGCCATCTTCTGCAATCCC 198 Query 41900 CCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGA 41959 ||||||||||||||| | || ||||| || ||||| ||||||||| || | ||| Sbjct 199 CCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCTGCTGAGCAGAGCCGCAAGCAGAAT 258 Query 41960 CAGACGGTAGTGATGCTTGTGCCAGAGGATATGTCTGTCGGATGGTTCAGCA-AGGATCT 42018 | ||||| || ||||| |||| | ||||| || ||||||||| ||| ||| | Sbjct 259 AAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCGACGGGATGGTTC-GCACAGGCACA 317 Query 42019 GGAGAGTGTTGACGAAGTTCGCATCATCACTGATGGACG 42057 | | | ||||| || || ||| ||||||| || || || Sbjct 318 GAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGGGCG 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157018759090332