Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq2192 219 2e-52 seq1577 179 1e-40 seq3409 150 7e-32 seq1599 147 9e-31 seq3892 132 2e-26 seq4809 114 5e-21 seq2784 93.3 2e-14 seq4482 82.4 3e-11 >seq2192 Length=16777 Score = 219 bits (242), Expect = 2e-52 Identities = 232/306 (76%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 13526 AGTTGTTTTTCCATGCGATCGAATTCAGCAATGTAGGCTTCCTTGAATGCAGCTGCTTTT 13585 || || | ||||||||| | || || |||||||| ||||||||||| || ||||||||| Sbjct 15637 AGCTGCTCTTCCATGCGGTTAAACTCCGCAATGTAAGCTTCCTTGAACGCTGCTGCTTTT 15696 Query 13586 TTGCCGGTGAAGCCCATCACCAGAAAAACGAAGCCGTTTTTGGTGATTTGGTACATTGGG 13645 ||||||||||||||||| || ||||||| |||||||| ||||| || ||||| || Sbjct 15697 TTGCCGGTGAAGCCCATGACGAGAAAAATGAAGCCGTCCTTGGTTATGGTATACATCGGT 15756 Query 13646 CGTTGTTCGCCTTTGGCGTCGGTGTAGGTAACGTCCTCAAAATTGAGGGCGTTAAATTTC 13705 ||| |||| || ||||||||| | |||||||||||||||| ||||||| Sbjct 15757 AGTTTGCGGCCTGTGCTGTCGGTGTATTCACTCACCTCAAAATTGAGGGCAGTAAATTTT 15816 Query 13706 TCTGAGCATTCAATATTTGCAATGGCGCGCAATACGTTATCGTGTCGCTTGCAAAAATAT 13765 || ||||| |||| | |||||| ||| |||||||||||||| |||||| ||| || Sbjct 15817 TCAGAGCAATCAAGGCGTTCAATGGTGCGTAATACGTTATCGTGACGCTTGTCAAAGTAA 15876 Query 13766 TCGGCAACGGCAAAGGACGTAGTAACAGCGCGACCATTGGAAATGGTGATTTCAGGTTGA 13825 || |||||| | || || ||||| ||||| ||||||| || |||| || ||| | Sbjct 15877 TCAGCAACGTCCAATGATGTAGTTACAGCTTTACCATTGCGGATAGTGACTTTGGGTGCA 15936 Query 13826 GAAAGG 13831 | |||| Sbjct 15937 GCAAGG 15942 >seq1577 Length=31499 Score = 179 bits (198), Expect = 1e-40 Identities = 238/327 (73%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 4325 TTCTTTTCGCACTCGATGAAGTATCGGCGGATCTGGCGGCCTTTTTCGTTACGCTCAACC 4384 ||||| || || ||||||||||| || || | ||| ||||||| ||||| ||||||||| Sbjct 21929 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 21988 Query 4385 ATCGCCAGTTCTTTGGCTGTGTCGAGAGTTAGGTGGTAGTCCTTGCTACGGCGATCACCT 4444 |||||||| ||||| ||||||| || || || |||||||||||||| | | ||| || Sbjct 21989 ATCGCCAGCTCTTTTGCTGTGTTCAGGGTGAGATGGTAGTCCTTGCTTCTTCTATCTCCA 22048 Query 4445 CCTCG---CCCTTTGGTTTGCCCATTTTGGCAAATCAAAATATAGTCCTGGCTTTCAATG 4501 ||||| |||| || |||| |||| || |||||| |||||| | |||| ||| Sbjct 22049 CCTCGTGTATTTTTGATTCCCCCACTTTGATGAACCAAAATGTAGTCCGCGTTTTCGATG 22108 Query 4502 AATCCATATTCAGCAATGCGTTCTTTAACCCAGTGCGCGAACAT-TCTGCCCACACCAAG 4560 ||||| || || | || ||| | |||| ||| || || || | || ||| | || Sbjct 22109 AATCCGTACTCGGTAACGCGGTTCTTAATCCA-TGTTGAAAAATCACGGCGAACATCGAG 22167 Query 4561 AAAAGAGTGTAGATCACGAGCGTTAACTAGAAGAATTGTTTCGTTGTCGATAGTGCCGTT 4620 || || || | ||| || | | || ||| ||| ||||||| ||||||||||| Sbjct 22168 GAATTCATGCAGCTTACGCGCATCACACAGTAGAGTTGCTTCGTTGGAAATAGTGCCGTT 22227 Query 4621 GAATACGGGGATGAGTTGACTGGTCAT 4647 ||| |||||||| || ||| ||||||| Sbjct 22228 GAAAACGGGGATAAGCTGATTGGTCAT 22254 Score = 86.0 bits (94), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 7/144 (5%) Strand=Plus/Plus Query 13021 GCGGGCATATTCCCATTGCTGGTATTGTATTAGCCGCACGCCCGGTCATAAACCAAGAAG 13080 |||||| ||||||| || | ||| || |||| ||| ||| | ||| |||| || | Sbjct 22326 GCGGGCTTATTCCCTTTTCAGGTCTTTTATTCGCC-CACACTCGGCCATATCTGAAATA- 22383 Query 13081 ACTGGACACaaaaaaaCCGCATGTCTGTCGGGCGCGGTAACCGCTACTTGCTAAGGTGTT 13140 ||||| |||||| |||||||||||||||| ||||| ||||||| | |||||||| Sbjct 22384 --TGGACGTAAAAAATCCGCATGTCTGTCGGGTGCGGTTTCCGCTAC--GAAAAGGTGTT 22439 Query 13141 TTGAGCACCATGAGGCAGAATATA 13164 || |||||| || || || |||| Sbjct 22440 TTCAGCACC-TGTAGCGGACTATA 22462 >seq3409 Length=8325 Score = 150 bits (166), Expect = 7e-32 Identities = 264/382 (69%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 28617 GCATACCGTGATGGTGTGGGTATCTGGACCATCTGCCGTGGTGCCACCCAGGTGGATGGT 28676 || || | ||| || | || |||||||| || ||| |||| | || | ||| ||||| Sbjct 3032 GCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 3091 Query 28677 AAGCTTGTCGTCCCCGGCATGAAGTTGTCGAAGGAAAAATGCGACCAGGTTAACGCCATT 28736 |||| || || ||||||||| || | | | || | || || | ||| Sbjct 3092 AAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCA 3151 Query 28737 GAACGTGATAAGGCGCTGGCATGGGTGGCGAAAAACATCAGAGTGCCACTGACCGAACCT 28796 |||| | |||||||| | ||||||| ||| | | |||||| || || || || Sbjct 3152 GAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACT 3211 Query 28797 CAGAAAGCGGGGATCGCGTCATTCTGTCCTTACAACATTGGCCCCGGTAAGTGTTTCCCG 28856 ||||||| || || || ||||| ||||| | || || || |||||||| || ||| | Sbjct 3212 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 3271 Query 28857 TCGACGTTTTATAAACGAATT-AATGCAGGCGATCGCAGGGGAGCGTGTGAAGCGATTCG 28915 || ||||| || | |||| ||||| ||||||| || || || || ||| |||| Sbjct 3272 TCAACGTTCTACCG-CAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAA 3330 Query 28916 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATCCGCTCAAATAATTGCTACGGTCA 28975 | |||||| |||||| |||| ||| |||||||||||| | ||||| || ||||| || Sbjct 3331 GCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCA 3390 Query 28976 GGTATCCCGTCGCGACCAGGAG 28997 | || | || || ||||||||| Sbjct 3391 GATAGCGCGGCGTGACCAGGAG 3412 Score = 141 bits (156), Expect = 4e-29 Identities = 316/469 (67%), Gaps = 9/469 (2%) Strand=Plus/Plus Query 29313 ATGACCGTGCCGTTTCACGGCGATTCTCTTTATGTGGTTAACCATAACGGTGAGCCATAC 29372 || ||||| |||||||| || || | || ||||| |||||| ||||| ||| || || Sbjct 5128 ATCACCGTTCCGTTTCATGGAAATGCCCTGTATGTCGTTAACTGTAACGATGAACCCTAT 5187 Query 29373 GTTCCCATGAAACCTGTCGTTGCGGGGATGGGGCTGGCCTGGCAATCACAGTTGGCTAAG 29432 || ||| || || ||| ||| |||||| |||| | || ||| || |||| Sbjct 5188 ACCCCGATGCGCCCAATCATTGAGGGTATGGGGTTGGCATACCAGGGTCAGGCGGGTAAG 5247 Query 29433 TTAAGACAGCGTTTTGCGTCAACTA--TAACGGAAATCGTTATGGTTGCTGAGGATGGGA 29490 || | | || ||||| ||| | | ||||||| | || | | | | ||| Sbjct 5248 TTGAAATCTCGCTTTGC--CAAGGGGGTCATGGAAATCATGATCCCTACCCAAGGTGGCC 5305 Query 29491 AACGACGCAATATGGTGTCCCTGCCACTTCGAAAACTTGCAGGCTGGTTACAAACCATCA 29550 || | || ||| | | || | ||| || ||| | || | |||| | | ||| Sbjct 5306 CACAA---AAAATGCTTTGTCTACAACTCCGCAAATTGGCTGCCTGGCTGGCCAGTATCC 5362 Query 29551 ATCCCAACAAAGTAAAACCCGAAATCCGCGACAAGGTAATCCAGTATCAGGAAGAGTGCG 29610 | || || ||||| || || |||| |||||||| || | ||||||||||| ||||||| Sbjct 5363 AGCCGAATAAAGTTAAGCCAGAAAGTCGCGACAAAGTGGTTCAGTATCAGGAGGAGTGCG 5422 Query 29611 ACGATGTTCTCTATGAATACTGGACGAAGGGGGGTGTCGTTAATCCCCGTCGAATG-AGT 29669 | || || ||||||||||||||||| || || || |||||||| | | | || Sbjct 5423 ATGACGTGCTCTATGAATACTGGACAAAAGGTCAGGTTACCAATCCCCG-CAAGCGCAGC 5481 Query 29670 GTGATGGAAGAACTCAATCAGGCCTGCGCTGACATGAAACGGGATAAAAACATTGCCAGT 29729 || ||| | ||||||||| || ||||| ||| | ||| ||| ||| | ||||||| Sbjct 5482 GTCATGCAGGAACTCAATGCCGCTTGCGCCGACTTAAAAACGGACAAAGCCGTTGCCAGC 5541 Query 29730 GTGTTTGCTACCGGGCTGAATGAGTGGAAACAGGTTAAAGCCGCGCATG 29778 ||||||| || || |||| ||||||||| |||| || || |||| Sbjct 5542 GTGTTTGGCACGGGATTGAACGAGTGGAAAGGCATTAAGGCGGCACATG 5590 Score = 123 bits (136), Expect = 1e-23 Identities = 129/164 (79%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 4637 TGACTGGTCATGATGACCTCCTTTGAAGTTTTAGTTAGCAATCACCAGTTAGTGGCTGGT 4696 ||||| | ||| | | ||||||| ||||| |||| | || |||||||||| |||||| Sbjct 1109 TGACTTGGCATAAAG-CCTCCTTACTAGTTT-AGTTT-CGATTACCAGTTAGTAGCTGGT 1053 Query 4697 GATCGGGTGTCAACTAGAGCCTTCAAAGATGCTCCGGGCATATTCCCCTTGCGGGTATTG 4756 |||| ||||||| ||| || ||| ||| |||||||||||||||||| |||||| Sbjct 1052 AGCCGGGCGTCAACT-GAGTCTAGTAAGCAACTCTGGGCATATTCCCCTTGCGAGTATTG 994 Query 4757 TATTACGCCTCTCCACCCGACCTTTGTACGGATGTGACTATGCC 4800 ||||||||||||||||||| |||| ||||||||| || ||| Sbjct 993 TATTACGCCTCTCCACCCGGCCTT----CGGATGTGATTACGCC 954 >seq1599 Length=30855 Score = 147 bits (162), Expect = 9e-31 Identities = 225/321 (70%), Gaps = 20/321 (6%) Strand=Plus/Minus Query 4327 CTTTTCGCACTCGATGAAGTATCGGCGGATCTGGCGGCCTTTTTCGTTACGCTCAACCAT 4386 |||||| ||||| |||||||| ||||| | ||| |||||||| ||||| |||| ||||| Sbjct 20322 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTGTCGTTGTGCTCCACCAT 20263 Query 4387 CGCCAGTTCTTTGGCTGTGTCGAGAGTTAGGTGGTAGTCCTTGCTACGGCGATCACCTCC 4446 |||||||||||||||||||| || || |||||||||||||| || | | | ||| Sbjct 20262 TGCCAGTTCTTTGGCTGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGC------CTCGTCC 20209 Query 4447 TCGCCCTTTGGTTTGCCCATTTTGGCAAATCAAAATATAGTCCTGGCTTTCAATGAATCC 4506 | ||| ||| || ||| ||| |||| || |||||||| |||||| ||| || Sbjct 20208 GTGACCT---ATTTCCCGATTCTGGGAAATAGCTATGTAGTCCTGATTTTCAACGAAACC 20152 Query 4507 ATATTCAGCAATGCGTTCTTTAACCCAGTGCGCGAACATTCTGCCCACACCAAGAAAAGA 4566 | | || ||||| ||||| ||| ||| || ||| | |||| || Sbjct 20151 AAACTCCGCAATCCGTTCGGTAATCCA---CG--------TTGCAAAAGGCAAGGAATTC 20103 Query 4567 GTGTAGATCACGAGCGTTAACTAGAAGAATTGTTTCGTTGTCGATAGTGCCGTTGAATAC 4626 ||||| || || || | | || || | | |||||| ||||| || ||||| || Sbjct 20102 ATGTAGCTCGCGTGCATCACAAAGTAGGGTGGATTCGTTACTTATAGTTCCTTTGAAAAC 20043 Query 4627 GGGGATGAGTTGACTGGTCAT 4647 |||||||||||| | ||||| Sbjct 20042 GGGGATGAGTTGTGTTGTCAT 20022 >seq3892 Length=6556 Score = 132 bits (146), Expect = 2e-26 Identities = 219/315 (70%), Gaps = 11/315 (3%) Strand=Plus/Minus Query 4325 TTCTTTTCGCACTCGATGAAGTATCGGCGGATCTGGCGGCCTTTTTCGTTACGCTCAACC 4384 ||||| || || ||||||||||| || || | ||| ||||||| ||||| ||||||||| Sbjct 3490 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 3431 Query 4385 ATCGCCAGTTCTTTGGCTGTGTCGAGAGTTAGGTGGTAGTCCTTGCTACGGCGATCACCT 4444 |||||||||||||| || |||||||| || || ||||||||||| || || || Sbjct 3430 ATCGCCAGTTCTTTAGCAGTGTCGAGGGTGAGCTGGTAGTCCTTTCTGCGACG------- 3378 Query 4445 CCTCGCCCTTTGGTTTGCCCATTTTGGC-AAATCAAAATATAGTCCTGGCTTTCAATGAA 4503 | || | || || ||| | | |||| ||| | || ||||| | || | | || Sbjct 3377 -CCCGACAGTT--TTCGCCGAATCTGGCGAAAATACGATGTAGTCTAGATTTGCGGTAAA 3321 Query 4504 TCCATATTCAGCAATGCGTTCTTTAACCCAGTGCGCGAACATTCTGCCCACACCAAGAAA 4563 || || || | ||| || || || ||||| | || | ||| ||| | ||| Sbjct 3320 CCCGTACTCTGAAATTCGCTCACGAATCCAGTTGGAAAAGTCGCGGCCTACATTCAAAAA 3261 Query 4564 AGAGTGTAGATCACGAGCGTTAACTAGAAGAATTGTTTCGTTGTCGATAGTGCCGTTGAA 4623 || || ||||| ||||| ||| |||||||| | ||||| | || ||||| || || Sbjct 3260 AGTATGAAGATCGCGAGCATTACAAAGAAGAATGGAATCGTTTGCAATGGTGCCATTAAA 3201 Query 4624 TACGGGGATGAGTTG 4638 || |||||||| || Sbjct 3200 AACAGGGATGAGCTG 3186 >seq4809 Length=3389 Score = 114 bits (126), Expect = 5e-21 Identities = 213/305 (70%), Gaps = 17/305 (6%) Strand=Plus/Minus Query 12600 TGAAATAGCAGTCTTCCAGTTTTTCGAACACTTCCCACGCCCGATCGGTTTCGAGCATTT 12659 |||| || || |||| ||| | ||||| |||||||| | |||||||||||||||| | Sbjct 1113 TGAAGTAACAATCTTTCAGCTGCTCGAATACTTCCCATTCTTGATCGGTTTCGAGCATCT 1054 Query 12660 TTGCGTGACGGGCTGCGCCGCGTTCTGTCCAGAGGATGAGGGAGCGAACGTTACGGGCGA 12719 | || || | || || ||||| ||||||||||| ||||| |||| ||| ||| || Sbjct 1053 TGGCATGCCTAGCGGCTCCGCGCTCTGTCCAGAGAATGAGACTGCGA--GTTTTGGGTGA 996 Query 12720 TTTTCACAGAAGGTCTTAAAGACATGCTGTGCTTAAATTCCC---GCAACTCCTCATTCT 12776 | || || | |||||||||||| || || ||||| | | | | | || | Sbjct 995 TATTTGCA-AGTGTCTTAAAGACA--CT---CTCAAATTATCAAGGTCAGTTCCGGTTGT 942 Query 12777 CAAGTAAAAAGTAGTGCTTACCGATAACAAATCGTCCAGAATTCCGATTGAAATTTTTTC 12836 ||||||| ||||| || ||| || || ||| ||| || ||| |||||| | Sbjct 941 TTTGTAAAAA----TGCTTGCCATCAACGAACCGATCAGCATTACGGTTGTGATTTTTGC 886 Query 12837 GGATGTAATCTGGTTCTGTGCCATATAAGCT-GGCAAGAAGCTCTGTAGTCACCACAGGT 12895 |||| | |||| |||||||| || ||||| || | |||||| ||||| | ||||| Sbjct 885 GGATTCTAACTGGCTCTGTGCCGTA-AAGCTCAGCTAAAAGCTCAGTAGTAATAACAGGA 827 Query 12896 ATATT 12900 ||||| Sbjct 826 ATATT 822 >seq2784 Length=12453 Score = 93.3 bits (102), Expect = 2e-14 Identities = 144/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 17688 ACAGCGCTTTGGGTAACACCTAATTCATAGGCTAATGATTCCTGCGACAGGCCTAACTCT 17747 ||| ||||||| | | ||||| |||| ||||| || || || || | ||||| |||| Sbjct 6291 ACACCGCTTTGCCTCATACCTAGCTCATGGGCTATAGACTCTTGTGAAAAGCCTAGCTCT 6232 Query 17748 TTCTT-TTTAGCGTTAAAAATACTTTTCAGACGCTTGGCGTCTTCCAGTTGCTCAGGGGT 17806 || || |||| | | |||||| || || || | | | || ||||| || || ||||| | Sbjct 6231 TTTTTCTTTAAC-TCAAAAATGCTCTTGAGCCTCATCGCATCTTCAAGCTGTTCAGGACT 6173 Query 17807 TAACGGTTTCTTTTTCATGTTCATACCATATCACCTTTGGTTATATGTAATGAAATATCT 17866 ||| | |||||||||||| | | | |||||||| | | |||| || ||| | Sbjct 6172 TAATGTTTTCTTTTTCATATAAAAATGATATCACCAATTGGAATAT-CAAACAAAAACAG 6114 Query 17867 GCGGTGTTGACATTTTAATAAC 17888 |||||||||| | |||||||| Sbjct 6113 ACGGTGTTGACTTATTAATAAC 6092 >seq4482 Length=5216 Score = 82.4 bits (90), Expect = 3e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 13534 TTCCATGCGATCGAATTCAGCAATGTAGGCTTCCTTGAATGCAGCTGCTTTTTTGCCGGT 13593 ||||||||| | || || || ||||| ||||||||||| | ||||| ||||||||||| Sbjct 1307 TTCCATGCGGTTAAACTCCGCGATGTAAGCTTCCTTGAACACTGCTGCCTTTTTGCCGGT 1366 Query 13594 GAAGCCCATCAC-CAGAAAAACGAAGCCGT 13622 ||||||||| || || || ||||| |||| Sbjct 1367 GAAGCCCATAACGAAGGAAGACGAAACCGT 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194700957724464