Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq57 140 2e-28 seq504 86.0 5e-12 >seq57 Length=2082711 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | || ||||| || ||| ||| ||||||||||||||||||||| Sbjct 1620437 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1620496 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| |||| | || ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 1620497 AGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGG 1620556 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || || || ||||||| | | || || || | |||||| Sbjct 1620557 ATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCAATAGTATCAGAGGGCTCCACT 1620616 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| |||||||| |||| |||||| |||||||| ||||| Sbjct 1620617 TCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCAT 1620663 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || ||||| | |||||||| || ||| ||| ||||||||||||||||||||| Sbjct 1619525 CCCCCTCTGAGCCGAAGAACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1619584 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| |||| | || || |||||||| || ||||| || || ||||| ||||| | ||| Sbjct 1619585 AGAGTTCGGCCATCTTCTAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGA 1619644 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || || || ||||| | | | || |||| ||| || Sbjct 1619645 ATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCAGACGGCTCAACT 1619704 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| |||||||| |||| |||||| |||||||| ||||| Sbjct 1619705 TCAAGAGTAATAGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCAT 1619751 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | || ||||| || ||| ||| ||||||||||||||||||||| Sbjct 1619069 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1619128 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| |||| | || ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 1619129 AGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGG 1619188 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || || || ||| ||| | | || || || | ||| || Sbjct 1619189 ATTCCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCAATAGTATCAGAGGGCTCAACT 1619248 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| |||||||| |||| |||||| || ||||| ||||| Sbjct 1619249 TCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACGAAAATTTGCAT 1619295 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | |||||||| | |||| ||| || || ||||||||||| ||| Sbjct 1621121 CCACCTCTGAGTCGAAGAACCAAATGCAACGTGGACTCCTTCTGTATATTGTAATCGGAT 1621180 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || ||||||||||| || ||||| || | ||| || ||||| | || Sbjct 1621181 AGGGTACGACCATCTTCCAACTGCTTTCCAGCAAAAATTAATCGTTGCTGATCAGGAGGG 1621240 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||| || ||||| | | || ||||| | ||| || Sbjct 1621241 ATTCCTTCCTTATCTTGAATTTTAGCCTTTACGTTTTCAATAGTATCTGAAGGCTCAACT 1621300 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || |||||||| |||||||| || |||||||| Sbjct 1621301 TCAAGAGTTATTGTCTTCCCCGTCAACGTTTTTACGAAGATCTGCAT 1621347 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | |||||||| | |||| |||||| || |||||||||||||| Sbjct 1620209 CCACCTCTGAGACGAAGAACCAAATGCAACGTGGACTCTTTCTGTATATTGTAATCAGAC 1620268 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || ||||||||||| || ||||| |||| | ||||||||| | ||| Sbjct 1620269 AGTGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAACCTCTGTTGATCTGGTGGA 1620328 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || ||| || ||| ||| | | | || || | || || Sbjct 1620329 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTATCAGATGGTTCTACT 1620388 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || |||||||| || || ||||| || || |||||||| Sbjct 1620389 TCTAAGGTGATGGTTTTTCCGGTTAACGTTTTGACGAATATCTGCAT 1620435 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| || |||||||| ||||| ||| | ||| | || ||||||||||| || ||||| Sbjct 1619789 TCTTTCTGGATATTGTAGTCAGACAGAGTGCGACCATCTTCCAACTGCTTGCCTGCAAAG 1619848 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||||||||| | |||| || || || || ||| || ||| ||| Sbjct 1619849 ATCAATCTCTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTCACATTT 1619908 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || |||| ||||| || | ||||| || ||||| || || || || ||| Sbjct 1619909 TCTATCGTGTCAGACGGTTCCACTTCTAAGGTAATGGTCTTTCCAGTTAAGGTCTTAACA 1619968 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 1619969 AATATCTGCAT 1619979 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| || |||||||| ||| ||||| | || |||||||| || || || || Sbjct 1618876 CTCTTTCTGAATGTTATAATCAGAAAGAGTTCGACCATCTTCCAACTGTTTCCCAGCGAA 1618935 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | || ||||| | || | || ||||| || |||||| ||||||| Sbjct 1618936 AATCAACCTTTGCTGATCGGGAGGGATTCCTTCCTTATCTTGAATCTTAGCTTTTACATT 1618995 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | || || || | |||||||||||||| || |||||||| || Sbjct 1618996 TTCAATTGTATCAGAAGGTTCTACTTCTAAGGTAATCGTTTTTCCTGTTAAAGTTTTCAC 1619055 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 1619056 GAATATCTGCAT 1619067 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 |||||| || ||||| |||||||| ||||| || ||| | || | || || ||||| Sbjct 1620688 ATGTAGAGTAGATTCTTTCTGAATATTATAATCTGAAAGAGTGCGGCCATCTTCTAACTG 1620747 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || || | || ||||| || | |||| || || || || || || Sbjct 1620748 CTTTCCGGCGAAGATTAATCTTTGTTGGTCGGGTGGAATTCCTTCTTTATCCTGGATTTT 1620807 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||||| | | | ||||||| ||| || || | ||||| |||||||| || Sbjct 1620808 AGCCTTTACGTTCTCTATTGTATCTGACGGCTCAACTTCAAGAGTAATAGTTTTTCCAGT 1620867 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||||||||| ||||| Sbjct 1620868 CAGGGTTTTTACAAAAATTTGCAT 1620891 >seq504 Length=327254 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| || ||||||||||| || || | || | || || | ||| || || ||||| | Sbjct 214104 CTTTCTGGATATTGTAATCGGAAAGGGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAAA 214163 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 ||| || || ||||| | |||| || || || || |||||| || ||| Sbjct 214164 TCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATCTTTGCCTTAACATTTT 214223 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | ||||| | || ||||| | ||||| ||||| |||||||||||||| |||| Sbjct 214224 CAATTGTGTCTGAGGGTTCAACCTCAAGGGTAATTGTTTTACCCGTCAAAGTTTTCACAA 214283 Query 48757 AAATCTGCAT 48766 |||| ||||| Sbjct 214284 AAATTTGCAT 214293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380860824050451