Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq2248 95.1 1e-14 >seq2248 Length=16282 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/235 (71%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 41094 CCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAGCGTTTAATCAATAACGATTA 41153 ||| ||||| ||||| ||||| ||| | |||||||| ||||| | |||| | | Sbjct 1309 CCTCGATTACGGCGTGCAGCTGAACAAGCTGATGTATCAGCGTCTGGTCAAAGGACAAGA 1250 Query 41154 CATCACTCTGTTCAGCCCT---GACGTTGCGAACGATCGCCTGTATGACGCGTTCTATCA 41210 ||||| || ||||||||| ||||| | || |||||||||||||||| | || Sbjct 1249 AATCACCCTCTTCAGCCCTTCTGACGTACC---CG---GCCTGTATGACGCGTT-TTTC- 1198 Query 41211 AGCGGATCAGACTGAGTTTGAAGAACTGTAT-ACCAGTCTTGAAAAAGACCCAACGGTAC 41269 || |||||| |||||| ||| | ||| | |||| |||||||||| | | | Sbjct 1197 -GCCGATCAGGATGAGTTCGAACGCTTATATCAGCAGT-ATGAAAAAGACGACAGCATCC 1140 Query 41270 GCAAGAAACGCATCAAAGCGGTAGATCTGTTCCAGTTGCTTGTTCAGGAACGCGC 41324 |||||||| ||| |||||||| ||||||||| || | | || |||||||| Sbjct 1139 GCAAGAAATCCATGAAAGCGGTCGATCTGTTCTCACTGATGATGCAAGAACGCGC 1085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569971755353560