Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_019445.1
Length=44784
Score E
Sequences producing significant alignments: (Bits) Value
seq2617 104 7e-18
seq6242 96.9 1e-15
seq6037 87.8 5e-13
>seq2617
Length=13952
Score = 104 bits (114), Expect = 7e-18
Identities = 137/181 (76%), Gaps = 7/181 (4%)
Strand=Plus/Minus
Query 34164 TTGGTGGTGAACTGTGCAGGGTTGGCGTAACCGGCTAA-AAGGACCCGGCGCACCTTTCG 34222
|||| ||||||||| ||||||| ||||||||| |||||||||||| |||| ||
Sbjct 1380 TTGGCGGTGAACTGAATAGGGTTGAGACTACCGGCTAACAAGGACCCGGCGAGCCTTGCG 1321
Query 34223 GTGCCCCCACACAGCCCACCATAATACGAATGTGGCCGTGCTATACGCATaaaaaaaC-C 34281
| |||||| ||||||||||| || | || ||| || || |||||||||||||| |
Sbjct 1320 GCTCCCCCATCCAGCCCACCATTATTCTGATATGG-CGGACT-GACGCATAAAAAAACAC 1263
Query 34282 GCT-TGCGCGGTGAATGCGCCTT-TTAGTAATCCGGGACGCCAATCCCGGCA-CTGGATT 34338
||| | ||| ||||||||| ||||| ||||||| ||| ||||||| ||| |||
Sbjct 1262 GCTGTAGGCGTGTTATGCGCCTTGTTAGTTATCCGGGGTCTCAAACCCGGCACCTGAATT 1203
Query 34339 T 34339
|
Sbjct 1202 T 1202
>seq6242
Length=2873
Score = 96.9 bits (106), Expect = 1e-15
Identities = 157/213 (74%), Gaps = 16/213 (8%)
Strand=Plus/Plus
Query 34164 TTGGTGGTGAACTGTGCAGGGTTGGCGTAAC---CGGCTAAA-AGGA--CCCGGCGCACC 34217
|||| ||||| ||| ||||||| || ||| |||||||| |||| ||||||| ||
Sbjct 1567 TTGGCGGTGAGCTGAACAGGGTT--CGAAACTACCGGCTAAACAGGAGACCCGGCGAGCC 1624
Query 34218 TTTCGGTGCCCCCACACAGCCCACCATAATACGAATGTGGCCGTGCTATACGCATaaaaa 34277
|| ||| |||||| ||||||||||| || | || |||| | | |||||||||||
Sbjct 1625 TTGCGGCTCCCCCATCCAGCCCACCATTATTCAGATATGGCGGACC--GACGCATAAAAA 1682
Query 34278 aaC-CGCT-TGCGCGGTGAATGCGCCT-TTTAGTAATCC-GGGACGCCAATCCCGGCACT 34333
||| |||| | ||| |||||||| |||||| |||| ||| | |||||||||||
Sbjct 1683 AACACGCTGTAGGCGTGTTATGCGCCTGTTTAGTTATCCGGGGTTTCGAATCCCGGCACC 1742
Query 34334 GGATTTTTCCAGTGCCCGATT-ACTATGGCACA 34365
|||||| | ||| | |||| ||||| || ||
Sbjct 1743 TGATTTTGCAGGTG-CAGATTGACTATAGCGCA 1774
>seq6037
Length=3259
Score = 87.8 bits (96), Expect = 5e-13
Identities = 221/334 (66%), Gaps = 18/334 (5%)
Strand=Plus/Minus
Query 11164 AATGGCTAAATCAGCAGCAGAGCGCAAAGCCGCTCAGAGAGCCAGACAAGCTGCATCTGG 11223
|||| ||||||| ||||||| || |||||||| ||| | | || ||||
Sbjct 2426 AATGCCTAAATCCCCAGCAGAACGTAAAGCCGCCCAGCGGG-------AGG-----CTGG 2379
Query 11224 TGTGCGTAAGATGGAGATTGTGCTTGATGCTCAGGAAATTGAAATGCTAGAGCGTAACTG 11283
|| ||| | || || || ||| |||||||| | || ||||| || |||||
Sbjct 2378 CGTAACAAAGTTTGAACTTAACCTCGATACTCAGGAACTGGACATGCTGCGCCGGAACTG 2319
Query 11284 TGCCACGCGTCGCCCCGGGCGTGCGCCTTACGAATTTGGTGAGTATATAGCGTCACTGAT 11343
|| || || || || | ||| ||||| | | |||||||| || |||||
Sbjct 2318 CGCTGTACGGCGACCAGGCAAAGAGCCCTACGACATGGACGAGTATATCCAGTTGCTGAT 2259
Query 11344 CCGCCAGGATGATGCACGCGTGCGCGGGCGTATAAAATCGATCAGCAGAAAACGTTGCGG 11403
|||| |||| || || | ||||| ||| || |||||| |||||| ||||||||||
Sbjct 2258 CCGCTAGGACGACGCCAGAGTGCGACAGCGGATTAAATCGCTCAGCAAGCAACGTTGCGG 2199
Query 11404 TAAGTGCGGCGAGAGAGTTCCAGTTA---ATTCATGCCCGTGCAATGGTGACTCGCAATG 11460
||| || |||||| | | || || | | | || | ||| | |||||||| ||||
Sbjct 2198 TAAATGTGGCGAGTCATTGCCCGTCACAGAGTGTTG--CATGC-AGGGTGACTCTGAATG 2142
Query 11461 CTGGGTGACTAAAGGCTGGCATGAAACGAAATTA 11494
|||| || | || |||||||||| ||| ||
Sbjct 2141 CTGGAACACAAGCGGATGGCATGAAATCAAACTA 2108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143159081345124
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |