Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq3409 185 2e-42 seq6037 138 3e-28 seq2617 123 7e-24 >seq3409 Length=8325 Score = 185 bits (204), Expect = 2e-42 Identities = 510/769 (66%), Gaps = 37/769 (5%) Strand=Plus/Plus Query 41467 CCCTTTTCATACACACACAGCGCCATCC--GAAGAATCGGAGGTGAGGCTATGACCAGAA 41524 |||||| ||| |||||||||||||||| | | |||||||||| |||||| ||| Sbjct 2619 CCCTTTCAATA-ACACACAGCGCCATCCCTGCCG----GGAGGTGAGGGTATGACACGAA 2673 Query 41525 TGAGCACCATTTACAGCAGACTTTCATATGGAACAGGCACCACGCTGACCGGCTGCGGTG 41584 ||||||| | |||||||| |||||||| |||| || || | | ||| || | Sbjct 2674 TGAGCACTCTCTACAGCAGGCTTTCATACGGAAGCGGGACGGGCTTAATGGGCCTTGGCG 2733 Query 41585 TATCAGCGAAGGCATATGCCGAAACAGCAAAAACAGCAAAAGAGGTGTCCTGGATGTTGG 41644 || || | || || |||| || ||| |||| |||| || ||| || | | Sbjct 2734 CGTCTGCCAGAGCCTACGCCG---CATCAACTACAG----AGAGC-GTA-TGGTTGCTTG 2784 Query 41645 CCGACAGAATTGCAGGGTTAAGCCTGAGCGACTGGGCAATTATTGTCGGTATCGCATGCA 41704 | |||| ||| || ||||||| || | |||||||| |||||||||||||| | |||| Sbjct 2785 CAGACAAAATGGCCGGGTTAACGCTCGGTGACTGGGCTATTATTGTCGGTATGGTCTGCA 2844 Query 41705 CGGTAATCACCTGTGCAGTGAACTGGTATTTCCGCTGGAAAGAA---CGG--GAGG---A 41756 | | ||| | ||| | |||||||| | |||| |||| || | | |||| | Sbjct 2845 CAATCGGCACTTTTGCTATCAACTGGTACTACCGCAGGAAGGAGTATCAGCTGAGGGAAA 2904 Query 41757 TCGGCGCAATGGCTATGTCTCTAAAGCTGAAGAATAAATTGAGCGCAGCGGTCGTTGGTT 41816 |||| ||| | || ||||| ||| | || | || || || | | | Sbjct 2905 AAGGCGG---GGCGTAATGTCAAAAGC--AAGCA--AACTCAGTGCGGCAATGCTGGCGC 2957 Query 41817 TGATTCTTGCCGGGGCTTCCGCACCCGTGATTCTCGATCAGTTTCTGGATGAGAAAGAGG 41876 | || ||| || | | || |||||||| | | || || | | ||| ||||||| Sbjct 2958 TCATCGCTGCTGGCGTGACTGCTCCCGTGATGATGGCGCAATTCCAGACTGAAAAAGAGG 3017 Query 41877 GTAACAGCTTGACAGCATATCGCGACGGCGGCGGACTCTGGACCATTTGCCGTGGTGCAA 41936 | | | | | || |||| ||||||||||| ||||||| |||||| |||| | | Sbjct 3018 GGATGCGTATAAACGCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGA 3077 Query 41937 CAATGGTTGATGGCAAGCCAGTAGTACAGGGCATGAAGCTGTCAGCTGAGAAATGCGCCC 41996 || ||| ||||||||||| ||||| |||||||||||||| | || | | | || || Sbjct 3078 CACGGGTAGATGGCAAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAA 3137 Query 41997 AGGTAAACGCCATTGAACGCGACAAGGCGCTGGCGTGGGTTGACCGAAATATCAAAGTAC 42056 || | | ||| |||| | |||||||| | ||||| || || || | ||||| | Sbjct 3138 AGATTGATGCCGCAGAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGC 3197 Query 42057 CACTGACCGAACCACAGAAAGCGGGTATCGCTTCTTTCTGCCCATATAACATCGGCCCCG 42116 | || || || | ||||||| || || || || || || || | || ||||| |||| Sbjct 3198 CGCTCACTGAGACTCAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCG 3257 Query 42117 GAAAATGCTTCCCATCGACCTTCTATAAGCGCA---TCAACGCAGGTGACCGCATCGGTG 42173 | || |||||| | || || |||| | |||| | || || || || | ||| |||| Sbjct 3258 GTAACTGCTTCACCTCAACGTTCT---ACCGCAAATTGAATGCCGGCGATCTCATTGGTG 3314 Query 42174 CATGCGAGGCAATCCGCTGGTGGATTAAAGACGGTGGCCGCGATTGCCG 42222 | ||| | | || | |||||| ||||| ||| |||||||| Sbjct 3315 CCTGCAAAGAGATTAAGCGCTGGATTTGGGACGGAGGCAAAGATTGCCG 3363 >seq6037 Length=3259 Score = 138 bits (152), Expect = 3e-28 Identities = 323/484 (67%), Gaps = 5/484 (1%) Strand=Plus/Minus Query 37856 GGAATTCTGATCCCCGCTACGCCGGAGACCAGCGATATTCTGCAATCAAAAATCAAACTT 37915 ||||| ||||| ||||| || ||||| | | ||| || | || | || ||| | Sbjct 1733 GGAATACTGATACCCGCCACACCGGATTCAAAAGATTTTATTCAG---AGGATAAAAGTC 1677 Query 37916 GGTGCCGTATTGGTAGCCGAATTTCGTCAGGTGAGGAATCCAGCATTCCATCGCCGTTTC 37975 || ||||| | ||||| | | ||||| || || || || || || ||| || Sbjct 1676 GGGGCCGTTGTCTCTGCCGATATCAGGCAGGTCAGAAACCCGGCTTTTCACCGCAAGTTT 1617 Query 37976 TTTGCGCTCCTGAATCTCGGGTTTGAATACTGGGAACCCACCGGTGGGGCGATTTCTTCC 38035 ||| | || || || ||||| || ||||||||| |||| || || ||||| || || | Sbjct 1616 TTTTCACTGCTTAACCTCGGTTTCGAATACTGGCAACCGACAGGCGGGGCCATATCCCCG 1557 Query 38036 AATGAACGTAAATTGGTGACCGGGTACGCTAAATTCCTCGCGGCATTTGGTGGAAACGAA 38095 | ||| ||| || | ||| |||| | || ||||| |||| |||| |||| Sbjct 1556 ACAGAAAAAAAACTGATACGCGGCTACGTTCGTTTTCTCGCTCACTTTGCAGGAAGCGAA 1497 Query 38096 GGCGCACTGCTGGATGCTGCCGAGCAGTATCTGGACCGTATCGCCGATAAGCGCGCCGGT 38155 | |||| | | || ||||| || | || ||| | | | ||| | || ||||| | Sbjct 1496 GACGCATTACAGGCCGCTGCTGATGAATACCTGAATGGCGTAGCCAAAAAACGCGCTGCA 1437 Query 38156 AGTATCAGCATCTGCAAATCCTATGACGCATATCGTGCATGGGTGATCATCGAGTCTGGC 38215 | |||||||| ||||| | || |||| || ||||||| |||||||| ||| Sbjct 1436 AATATCAGCACGGTAAAATCATTCGAAGCATTCCGCCGCTGGGTGACTATCGAGTCCGGC 1377 Query 38216 CACTACGACGCCATAC-AGCTTCCCGACGGCACCCTTCGCAAACACCCCCGCAGCATTGC 38274 || ||||| | |||| |||| || ||||| | ||| | |||| | || || || | Sbjct 1376 CATTACGAAGT-ATACGAGCTGCCAGACGGTAGCCTGCACAAAGAGCCGCGATCGATATC 1318 Query 38275 CTTTGCCAACATGGACGAAACCGAGTTCCAGCAGCTGTACAAAGCCGCGCTCGATGTTCT 38334 || || || ||||| |||| ||| || || |||||||||||| | || |||||||| Sbjct 1317 GTTCGCAAAAATGGAAGAAATCGAATTTCACGCCCTGTACAAAGCCACACTGGATGTTCT 1258 Query 38335 GTGG 38338 ||| Sbjct 1257 CTGG 1254 >seq2617 Length=13952 Score = 123 bits (136), Expect = 7e-24 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 41819 ATTCTTGCCGGGGCTTCCGCACCCGTGATTCTCGATCAGTTTCTGGATGAGAAAGAGGGT 41878 || || ||||| ||| ||||| | || ||||| || | ||||| ||||| |||||||| Sbjct 3405 ATACTGGCCGGCGCTCCCGCATCGGTTATTCTTGACCGATTTCTTGATGAAAAAGAGGGC 3346 Query 41879 AACAGCTTGACAGCATATCGCGACGGCGGCGGACTCTGGACCATTTGCCGTGGTGCAACA 41938 ||| || | ||||| | || || || || | ||||| |||||| |||||| ||| Sbjct 3345 AACCATTTAATTGCATACCCAGATGGTGGTGGTGTATGGACGATTTGCGGTGGTGTAACG 3286 Query 41939 ATGGTTGATGGCAAGCCAGTAGTACAGGGCATGAAGCTGTCAGCTGAGAAATGCGCCCAG 41998 ||| ||||| ||||| ||||| |||||||||||||| | |||||| | ||||| | Sbjct 3285 CGGGTAGATGGAAAGCCGGTAGTGAAGGGCATGAAGCTGACCGCTGAGCAGTGCGCAAAA 3226 Query 41999 GTAAACGCCATTGAACGCGACAAGGCGC 42026 || | ||||| || | | ||||||| Sbjct 3225 GTTGATGCCATAGAGCAGAAAAAGGCGC 3198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141850538363178