Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_019716.1 Length=44510 Score E Sequences producing significant alignments: (Bits) Value seq3409 123 7e-24 seq2192 118 3e-22 seq2617 86.0 2e-12 >seq3409 Length=8325 Score = 123 bits (136), Expect = 7e-24 Identities = 320/487 (66%), Gaps = 8/487 (2%) Strand=Plus/Plus Query 42762 CTGGCGCTGATTGCTGCAGGCGCGTCTGCTCCTCAAATCCTTGACCAGTTTCTTGATGAA 42821 |||||||| || ||||| |||| | ||||||| || | | || || | |||| Sbjct 2951 CTGGCGCTCATCGCTGCTGGCGTGACTGCTCCCGTGATGATGGCGCAATTCCAGACTGAA 3010 Query 42822 AAAGAGGGTAACCACACTACGGCATACCGCGATGGTTCCGGTATATGGACCATCTGTCGT 42881 |||||||| | | | | || || | || || ||| || ||||| || || || Sbjct 3011 AAAGAGGGGATGCGTATAAACGCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGT 3070 Query 42882 GGTGCCACAATGGTGGATGGTAAGCCCGTCATACCGGGAATGAAGCTGTCGAAGGAAAAA 42941 || | ||| ||| ||||| ||||| || | ||| ||||||||| | | | Sbjct 3071 GGCGTGACACGGGTAGATGGCAAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAG 3130 Query 42942 TGCGACCAGGTTAACGCTATTGAACGTGATAAGGCGCTGGCATGGGTGGAGCGCAATATT 43001 || | || || | || |||| | |||||||| | |||||||| ||||| || Sbjct 3131 TGTGCAAAGATTGATGCCGCAGAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTT 3190 Query 43002 AAAGTACCACTGACCGAACCACAGAAAGCGGGTATAGCGTCATTTTGTCCCTATAACATT 43061 ||||| || || || || | ||||||| || || || ||||||||||| | || || Sbjct 3191 AAAGTGCCGCTCACTGAGACTCAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATC 3250 Query 43062 GGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAGCGGC----TGAATGCCGGTGATCG 43117 || |||||||| || ||| | || ||||| || | || |||||||||| |||| Sbjct 3251 GGTCCCGGTAACTGCTTCACCTCAACGTTCTA----CCGCAAATTGAATGCCGGCGATCT 3306 Query 43118 TAAGGGTGCATGTGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCAT 43177 | ||||| || | | |||| | ||||| || || || |||||||| || Sbjct 3307 CATTGGTGCCTGCAAAGAGATTAAGCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTAT 3366 Query 43178 ACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTG 43237 || | |||||||| || || ||| | || ||||||||||| | |||| | || Sbjct 3367 CCGCGCCAATAACTGTTACGGGCAGATAGCGCGGCGTGACCAGGAGGCGGAATTATCGTG 3426 Query 43238 TTGGGGG 43244 |||||| Sbjct 3427 CTGGGGG 3433 >seq2192 Length=16777 Score = 118 bits (130), Expect = 3e-22 Identities = 195/279 (70%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 33749 ATGGTCAGGCTGTTACTTCATCCCTGGCTGTTGCCAACTTCTTCTCCAAACGTCATGACG 33808 ||||| | ||||| ||| |||| ||| ||||| | | ||| ||| ||||| || Sbjct 15913 ATGGTAAAGCTGTAACTACATCATTGGACGTTGCTGATTACTTTGACAAGCGTCACGATA 15854 Query 33809 ATGTACTGAAAAAGATCCGCACGC-TTGAATGCTCTGCATCATTCACTTCCCGCAATTTT 33867 | ||| | | || | |||| |||| ||||||| | ||| ||| ||| ||||||| Sbjct 15853 ACGTATTACGCACCATT-GAACGCCTTGATTGCTCTGAAAAATTTACTGCCCTCAATTTT 15795 Query 33868 TCGGTGAGTGATTACACCGATTGCACAGGCCGCAAACTACCTTGCTATCAAATAACCCGC 33927 ||||||||| |||||||| ||||||||||||||||||| ||| |||||| Sbjct 15794 GAGGTGAGTGAATACACCGACAGCACAGGCCGCAAACTACCGATGTATACCATAACCAAG 15735 Query 33928 GACGGCTTTGCGTTTCTTGCTATGGGTTTCACGGGTAAACGTGCTGCCCAGTTCAAAGAG 33987 |||||||| ||||| | ||||| ||||| || ||| || || |||||| || Sbjct 15734 GACGGCTTCATTTTTCTCGTCATGGGCTTCACCGGCAAAAAAGCAGCAGCGTTCAAGGAA 15675 Query 33988 GCATACATCAATGCCTTTAACCAGATGGAGAAACAGCTT 34026 || ||||| | ||||||| ||||| | |||||| Sbjct 15674 GCTTACATTGCGGAGTTTAACCGCATGGAAGAGCAGCTT 15636 >seq2617 Length=13952 Score = 86.0 bits (94), Expect = 2e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 42798 ATCCTTGACCAGTTTCTTGATGAAAAAGAGGGTAACCACACTACGGCATACCGCGATGGT 42857 || ||||||| |||||||||||||||||||| ||||| | ||||||| |||||| Sbjct 3378 ATTCTTGACCGATTTCTTGATGAAAAAGAGGGCAACCATTTAATTGCATACCCAGATGGT 3319 Query 42858 TCCGGTATATGGACCATCTGTCGTGGTGCCACAATGGTGGATGGTAAGCCCGTCATACCG 42917 ||| ||||||| || || |||||| || ||| ||||| ||||| || | | Sbjct 3318 GGTGGTGTATGGACGATTTGCGGTGGTGTAACGCGGGTAGATGGAAAGCCGGTAGTGAAG 3259 Query 42918 GGAATGAAGCTG 42929 || ||||||||| Sbjct 3258 GGCATGAAGCTG 3247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142282453528368