Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_019716.1
Length=44510
Score E
Sequences producing significant alignments: (Bits) Value
seq3409 123 7e-24
seq2192 118 3e-22
seq2617 86.0 2e-12
>seq3409
Length=8325
Score = 123 bits (136), Expect = 7e-24
Identities = 320/487 (66%), Gaps = 8/487 (2%)
Strand=Plus/Plus
Query 42762 CTGGCGCTGATTGCTGCAGGCGCGTCTGCTCCTCAAATCCTTGACCAGTTTCTTGATGAA 42821
|||||||| || ||||| |||| | ||||||| || | | || || | ||||
Sbjct 2951 CTGGCGCTCATCGCTGCTGGCGTGACTGCTCCCGTGATGATGGCGCAATTCCAGACTGAA 3010
Query 42822 AAAGAGGGTAACCACACTACGGCATACCGCGATGGTTCCGGTATATGGACCATCTGTCGT 42881
|||||||| | | | | || || | || || ||| || ||||| || || ||
Sbjct 3011 AAAGAGGGGATGCGTATAAACGCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGT 3070
Query 42882 GGTGCCACAATGGTGGATGGTAAGCCCGTCATACCGGGAATGAAGCTGTCGAAGGAAAAA 42941
|| | ||| ||| ||||| ||||| || | ||| ||||||||| | | |
Sbjct 3071 GGCGTGACACGGGTAGATGGCAAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAG 3130
Query 42942 TGCGACCAGGTTAACGCTATTGAACGTGATAAGGCGCTGGCATGGGTGGAGCGCAATATT 43001
|| | || || | || |||| | |||||||| | |||||||| ||||| ||
Sbjct 3131 TGTGCAAAGATTGATGCCGCAGAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTT 3190
Query 43002 AAAGTACCACTGACCGAACCACAGAAAGCGGGTATAGCGTCATTTTGTCCCTATAACATT 43061
||||| || || || || | ||||||| || || || ||||||||||| | || ||
Sbjct 3191 AAAGTGCCGCTCACTGAGACTCAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATC 3250
Query 43062 GGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAGCGGC----TGAATGCCGGTGATCG 43117
|| |||||||| || ||| | || ||||| || | || |||||||||| ||||
Sbjct 3251 GGTCCCGGTAACTGCTTCACCTCAACGTTCTA----CCGCAAATTGAATGCCGGCGATCT 3306
Query 43118 TAAGGGTGCATGTGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCAT 43177
| ||||| || | | |||| | ||||| || || || |||||||| ||
Sbjct 3307 CATTGGTGCCTGCAAAGAGATTAAGCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTAT 3366
Query 43178 ACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTG 43237
|| | |||||||| || || ||| | || ||||||||||| | |||| | ||
Sbjct 3367 CCGCGCCAATAACTGTTACGGGCAGATAGCGCGGCGTGACCAGGAGGCGGAATTATCGTG 3426
Query 43238 TTGGGGG 43244
||||||
Sbjct 3427 CTGGGGG 3433
>seq2192
Length=16777
Score = 118 bits (130), Expect = 3e-22
Identities = 195/279 (70%), Gaps = 2/279 (1%)
Strand=Plus/Minus
Query 33749 ATGGTCAGGCTGTTACTTCATCCCTGGCTGTTGCCAACTTCTTCTCCAAACGTCATGACG 33808
||||| | ||||| ||| |||| ||| ||||| | | ||| ||| ||||| ||
Sbjct 15913 ATGGTAAAGCTGTAACTACATCATTGGACGTTGCTGATTACTTTGACAAGCGTCACGATA 15854
Query 33809 ATGTACTGAAAAAGATCCGCACGC-TTGAATGCTCTGCATCATTCACTTCCCGCAATTTT 33867
| ||| | | || | |||| |||| ||||||| | ||| ||| ||| |||||||
Sbjct 15853 ACGTATTACGCACCATT-GAACGCCTTGATTGCTCTGAAAAATTTACTGCCCTCAATTTT 15795
Query 33868 TCGGTGAGTGATTACACCGATTGCACAGGCCGCAAACTACCTTGCTATCAAATAACCCGC 33927
||||||||| |||||||| ||||||||||||||||||| ||| ||||||
Sbjct 15794 GAGGTGAGTGAATACACCGACAGCACAGGCCGCAAACTACCGATGTATACCATAACCAAG 15735
Query 33928 GACGGCTTTGCGTTTCTTGCTATGGGTTTCACGGGTAAACGTGCTGCCCAGTTCAAAGAG 33987
|||||||| ||||| | ||||| ||||| || ||| || || |||||| ||
Sbjct 15734 GACGGCTTCATTTTTCTCGTCATGGGCTTCACCGGCAAAAAAGCAGCAGCGTTCAAGGAA 15675
Query 33988 GCATACATCAATGCCTTTAACCAGATGGAGAAACAGCTT 34026
|| ||||| | ||||||| ||||| | ||||||
Sbjct 15674 GCTTACATTGCGGAGTTTAACCGCATGGAAGAGCAGCTT 15636
>seq2617
Length=13952
Score = 86.0 bits (94), Expect = 2e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 42798 ATCCTTGACCAGTTTCTTGATGAAAAAGAGGGTAACCACACTACGGCATACCGCGATGGT 42857
|| ||||||| |||||||||||||||||||| ||||| | ||||||| ||||||
Sbjct 3378 ATTCTTGACCGATTTCTTGATGAAAAAGAGGGCAACCATTTAATTGCATACCCAGATGGT 3319
Query 42858 TCCGGTATATGGACCATCTGTCGTGGTGCCACAATGGTGGATGGTAAGCCCGTCATACCG 42917
||| ||||||| || || |||||| || ||| ||||| ||||| || | |
Sbjct 3318 GGTGGTGTATGGACGATTTGCGGTGGTGTAACGCGGGTAGATGGAAAGCCGGTAGTGAAG 3259
Query 42918 GGAATGAAGCTG 42929
|| |||||||||
Sbjct 3258 GGCATGAAGCTG 3247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 142282453528368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |