Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq3409 785 0.0 seq7786 89.7 1e-13 seq4809 84.2 6e-12 >seq3409 Length=8325 Score = 785 bits (870), Expect = 0.0 Identities = 1147/1605 (71%), Gaps = 30/1605 (2%) Strand=Plus/Plus Query 11 TTTAACGCTAACCCGAtttttttAGTTTT-AAGGTGTTGACATATGGCAGATAAACGAAT 69 ||||||||||||||||||||||||||||| |||||| | || |||||||| ||||||| Sbjct 6596 TTTAACGCTAACCCGATTTTTTTAGTTTTCAAGGTGCTCTCAAATGGCAGAAAAACGAAA 6655 Query 70 CCGTTCCGACAGTTCGGCGGCAGCGGTTCAGGCCATGAAAAATGCAGCTGTGGACACCAT 129 ||| || |||||| || |||| ||| | ||||||||||||||||| | | ||||||| | Sbjct 6656 CCGCTCTGACAGTGCGACGGCGGCGATCCAGGCCATGAAAAATGCGACCGGGGACACCCT 6715 Query 130 CGATCCGCCGTCCCATGCAGGTTTGGAGAAAAAAGCCGAACCATTCTGGCATGACAATAT 189 | || ||| | || || |||||||| ||||||||||| || || |||||||||||||| Sbjct 6716 TCAGCCCCCGGCGCACGCGGGTTTGGAAAAAAAAGCCGAGCCTTTTTGGCATGACAATAT 6775 Query 190 CAGATCGAAAGCTCTGGACAGCTGGACGCCTGCCGACCTTCTAGCCGCCGTAGAACTTGC 249 |||| ||||| |||| |||||||| || || ||||| ||||||| || || || || Sbjct 6776 TCGATCCAAAGCATTGGATAGCTGGACACCCGCTGACCTGTTAGCCGCTGTTGAGCTGGC 6835 Query 250 TAATAATCAGCTCTATATCACCGTTTTACGCAAGGATTTACGCAAAGAAGAGCGCATACG 309 |||||||| | |||||||| | | ||||| |||||||| || ||||||||| | || Sbjct 6836 AAATAATCAACACTATATCAACATGTTACGGCGTGATTTACGTAACGAAGAGCGCGTGCG 6895 Query 310 CGGGGAGGAGCGAGACGAAGGCCTT---ATAAAAGACCTCCGCAAGCAAATTGTTGAGCT 366 ||| |||| | || || | || || || ||||| | ||||| ||||| || || | Sbjct 6896 CGGTGAGGCGAGAAAC-ATGG--TTGAAATTAAAGAATTGCGCAAACAAATCGTAGAATT 6952 Query 367 ACAACGAACTATCCTGGCTCAGCGCCGCGACCTCCAGATCCACTCCCACGCAACCAACGG 426 ||| || | || |||| ||||| || || || || ||||| |||||||| |||||||| Sbjct 6953 ACAGCGCGCGATTTTGGCACAGCGACGAGATCTGCAAATCCATTCCCACGCTACCAACGG 7012 Query 427 CGAAAGTCGCGACCAGAAGAAACGTAATCAG-AACGATCGTGATGCACGGAATACCAAAA 485 ||||| ||||||||| | ||| || ||| || || | | || | | || | Sbjct 7013 TGAAAGCCGCGACCAGC-GTAACAAAAACAGGAATGACAGGAACGCCAGAAGCACGGTCA 7071 Query 486 ACGAGCATCAGGACCAGGACGATAACCTGATCGCCTTTCCCAAGCACGGATAAAAGACT- 544 | ||||| | | |||||||| |||||||| ||||| || || ||| | | Sbjct 7072 GTGGTCATCAACGCGAAGACGATAATCTGATCGCGTTTCCAAAACAT---TAAGGGGCAT 7128 Query 545 --ATGACGCGAGGTGAGCGTGTAATAGCGTTCATTGAGCGCTTTTGCATCGTGCCAGAAG 602 ||||||||||||||||| || ||||||||||||||||||| |||||| ||||| |||| Sbjct 7129 TCATGACGCGAGGTGAGCGCGTGATAGCGTTCATTGAGCGCTATTGCATTGTGCCGGAAG 7188 Query 603 GCAAGCTTATCGGCCAACCTATGCGGTTGGACCCCTTTCAGAAAGATTTCATCCTGGCGG 662 ||||| ||||||| || || ||| | | || ||| |||||||| || | || | | Sbjct 7189 GCAAGTTTATCGGACAGCCGATGAAGCTTGATGGCTTCCAGAAAGACTTTCTGCTTGATG 7248 Query 663 TTTACGACAATCCAGCCGGAACGGATATGGCGATCCTCTCCATCGCCCGAAAAAATGGTA 722 | || ||||| || | || || | ||| || | |||||||||||| || || | Sbjct 7249 TCTATGACAACCCGGTGGGCACCAGCAGGGCAATTTTAAGCATCGCCCGAAAGAACGGGA 7308 Query 723 AGACTGGCCTGATTGCCGGAATTCTGCTGGCTCACCTGGTGGGGCCTGAAGCGGTGCAGA 782 | || || | ||||| ||||| || || ||||||||||| || || ||||||||||| | Sbjct 7309 AAACCGGGTTAATTGCTGGAATACTTCTTGCTCACCTGGTTGGCCCAGAAGCGGTGCAAA 7368 Query 783 ACACGCAGATTGTCAGCGGTGCACTCAGCCGGGAACAGGCGGCCATCGTTTTTAACCTCG 842 || | ||||| ||||| || || | ||||| || ||||| || | || |||| ||| Sbjct 7369 ACTCTCAGATCGTCAGTGGGGCGATGAGCCGAGAGCAGGCTGCGCTGGTCTTTAGCCTGT 7428 Query 843 CGGTGAAGATGGTTAACCTGAACCCCAAGCTGCAGGAGATTGTGCACATTACGCCCAGCG 902 |||| || ||| |||| || |||||| ||| ||||| |||||||| || | ||||||| Sbjct 7429 CGGTCAAAATGATTAATCTTAACCCCGCGCTACAGGACATTGTGCATATCATTCCCAGCG 7488 Query 903 GCAAAAAGCTGATCGGCCTGCCGTGTAACGTCGAATACAAGGCTTTATCCGCAGAAGGTA 962 | || |||||| || || ||||| || || |||||||| | |||| || |||| Sbjct 7489 GTAAGCGGCTGATTGGTACCCCTTGTAATGTTGAGTACAAGGCGCTGGCCGCCGAGGGTA 7548 Query 963 AGACGACGCACGGCCTTTCCCCCATTCTGGCCATTCTCGATGAAACAGGGCAGGTTAGGG 1022 | || | ||||| ||||| || | ||||||||||| |||||| |||||||| | Sbjct 7549 AAACCGCACACGGTCTTTCTCCAGTGCTGGCCATTCTGGATGAAGTGGGGCAGGTAGTAG 7608 Query 1023 GTCCGCAGGATGATTTTATCGATGCAATAACTACGGCGCAGGGGGCTCATGAAAACCCGC 1082 |||||| ||||||| | || || || ||| | || ||||| ||||| | || Sbjct 7609 GTCCGCGCAGTGATTTTGTTGACGCCATTGTTACCTCACAAGGGGCGCATGAGACACCTT 7668 Query 1083 TGCTAATCGTTATCAGTACGCAGGCAGCAAACGATGCTGACCTGCTTAGCATCTGGATTG 1142 |||| || | ||||||||| ||||| || ||||| || |||||| | ||| | ||||||| Sbjct 7669 TGCTGATTGCTATCAGTACCCAGGCGGCCAACGACGCCGACCTGTTGAGCGTGTGGATTG 7728 Query 1143 ATGATGCGGTCAAATCGAAAGATCCGCACATCGTGTGCCACGTTTATGAAGCGCCAAAAG 1202 |||| |||| | || ||||| || || || ||||| || || || ||||| Sbjct 7729 ATGACGCGGCAACTTCTGGCGATCCACATATTGTTTGCCATGTGCATACTGCCGAAAAAG 7788 Query 1203 ACGCTGATATCAGTAAACGCGAGTCCTGGCTGGCTGCGAACCCGGCACTGGGAACATTCA 1262 |||| || || | | || | | |||| || || || ||||| ||||||| || Sbjct 7789 ACGCCGACATTATGGATCGGGCTGCATGGCGTGCCGCTAATCCGGCGTTGGGAACCTTTC 7848 Query 1263 GGTCAGAAAAAGACATGGCGCGCCAGGCTGAGAAAGCTTGCCGA--ATGCCAAGCTTCGA 1320 | ||| | || |||| ||||| ||| || | || | ||| ||||| ||| || Sbjct 7849 GTTCACTGGACGAGATGGAGCGCCGGGCAGAAGAGGC--GACGAGGATGCCCAGCAGTGA 7906 Query 1321 AAACACCTTCCGAAACCTCAACCTCAATCAGCGCGTGTCTACCGTATCGCCGTTTATCTC 1380 ||| ||||| || || ||||| || ||||||||||| || || || || ||||| |||| Sbjct 7907 AAATACCTTTCGTAATCTCAATCTAAATCAGCGCGTATCCACTGTGTCACCGTTCGTCTC 7966 Query 1381 CCGCAGCGTGTGGG-AGC---TTTGCGGA--GAGAT---GCCGATTAACACCCCGAGGAA 1431 ||| | || |||| ||| | | | || || || ||| | | || | Sbjct 7967 CCGTAATGTTTGGGAAGCCAGTATTCTGAAGGACATTCGTCCGGGCATGATTGTTGGGGA 8026 Query 1432 GTGGTACGCGGGGCTGGATCTGTCAGCCAGGAACGACTTAACGGCGCTGGTTATCGCTGG 1491 ||| ||||||||||| || ||||||| | ||||||| | || |||||||| || | || Sbjct 8027 GTGCTACGCGGGGCTCGACCTGTCAGAAAAGAACGACCTTACCGCGCTGGTGATTGTGGG 8086 Query 1492 TGAAGCAGATGATGGTGTCTGGGATGTTTTCCCCTTCTTCTGGACACCGCAAAAGACTCT 1551 | | | || | | |||| || ||||| ||||||||||||||| ||||| || Sbjct 8087 ACAGGATAAAGAGCGCGACTGGCTGGTATTCCCGTTCTTCTGGACACCGGGTAAGAC-CT 8145 Query 1552 TG-AAGAGCGAACCAAAACGGACCGAGCACCCTATGACGTTTGGG 1595 || || || ||| || || || || ||||| ||||||| Sbjct 8146 TGCTCGACCGGGCCAGGCGAGATCGCGCCCCTTATGATGTTTGGG 8190 Score = 120 bits (132), Expect = 8e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 40940 ATGTGCGAGCAGCAGGGGCGCATAACACCAGCAACGGTGGTCGACCATATCGTGCCCCAC 40999 |||||| | ||||||| || |||||||| || || || ||||| ||| | || ||| Sbjct 6264 ATGTGCCACGAGCAGGGACGGATAACACCCGCTGTCGTTGTTGACCACATCATTCCGCAC 6323 Query 41000 AAACTGAAAGATGCGCTTAAGTCAGGTAACCCTCTGGCCATATCGAAAGCACAGCTCCTG 41059 ||||| ||||| ||| | ||||| || || ||| ||| | || ||||| | Sbjct 6324 AAACTTAAAGAAGCGTTGAAGTCTGGCGACAAGGCGGCGATAGCAAAGGCACAAACATTA 6383 Query 41060 TTCTGGAGTAAAGAGAACTGGCAGCCACTGTGCAAAGCGCATCATGACTCAACGAAACAG 41119 ||||||| |||||||||||||||| ||||||| ||||||| || || ||||| Sbjct 6384 TTCTGGAATAAAGAGAACTGGCAGGGACTGTGCGTCCCGCATCACTCATCGACTAAACAA 6443 Query 41120 AGAATGGAGAAGAGCGGCGCGGTAATCGGTTGTGATGCCAACGGCTACCCGCTCGATCC 41178 |||||||| ||| | | | ||| ||||| || |||| || || || |||||||| Sbjct 6444 AGAATGGAAAAGCGGGACAAGGTCATCGGCTGCGATGAGAATGGTATGCCTCTCGATCC 6502 >seq7786 Length=1398 Score = 89.7 bits (98), Expect = 1e-13 Identities = 113/151 (75%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 39180 AAACGCGCATTCTCGTGCGCATATCAACCAAGAGCTTTTCGGGATATGAGACAGAGACAG 39239 || || |||||| ||||| | | | | |||||||| || | |||| | ||| ||| Sbjct 1392 AACCGTGCATTCGCGTGCACTTCACTAG--AGAGCTTTCCGTAGTGTGAGTCTGAGGCAG 1335 Query 39240 GACGGTGGCTTACATCGTGCCGCTCTTGGGCTGTCCATGTCTGCGAGAACTGGCTCATAT 39299 | |||||| | || |||| ||||||| || ||| |||||||| || |||| ||||| | Sbjct 1334 GGCGGTGGATCACCTCGTTCCGCTCTCGG-CTGCCCATGTCTACGCGAACAGGCTCGCAC 1276 Query 39300 CACCAAAAAGGTAAATACGATGTCCAATATC 39330 ||| | ||||||||||||||| ||||||| Sbjct 1275 CAC--AGAAGGTAAATACGATG--CAATATC 1249 >seq4809 Length=3389 Score = 84.2 bits (92), Expect = 6e-12 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 35422 AAAGAAGCACGCGGCAGAGAATGTCAGGTACGTATTTACGGCGTATGCAATGGCAATCCT 35481 ||||| || | ||| |||| |||||||| | | | || | || || || || || Sbjct 597 AAAGAGGCCAGAGGCCGAGAGTGTCAGGTGAGGCTCTCGGGTATCTGTAACGGTAACACT 656 Query 35482 GAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGGAACGGGAATGAAACCT 35541 ||||| ||| ||||| ||||||| ||| | || |||||||| || || ||||| ||| Sbjct 657 GAAACCGTAGTGCTGGCCTATTACCGAATGTCCGGCATTTGCGGCACAGGCATGAAGCCT 716 Query 35542 GACGACCTGATCGGCGCATGG 35562 |||||||| | ||||||||| Sbjct 717 GACGACCTTTTTGGCGCATGG 737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132741927435060