Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq3409 807 0.0 seq2 100 7e-17 >seq3409 Length=8325 Score = 807 bits (894), Expect = 0.0 Identities = 1124/1561 (72%), Gaps = 27/1561 (2%) Strand=Plus/Plus Query 1 ATGGCAGATAAACGAACCCGTTCCGACAGTTCGGCGGCAGCGGTTCAGGCCATGAAAAAT 60 |||||||| ||||||| ||| || |||||| || |||| ||| | ||||||||||||||| Sbjct 6639 ATGGCAGAAAAACGAAACCGCTCTGACAGTGCGACGGCGGCGATCCAGGCCATGAAAAAT 6698 Query 61 GCAGCAGTGGACACCATCGATCCTCCGTCCCATGCAGGTTTGGaaaaaaaaGCCGAACCA 120 || | | ||||||| | | || ||| | || || |||||||||||||||||||| || Sbjct 6699 GCGACCGGGGACACCCTTCAGCCCCCGGCGCACGCGGGTTTGGAAAAAAAAGCCGAGCCT 6758 Query 121 TTCTGGCATGACAATATCAGATCGAAAGCTCTGGACAGCTGGACGCCAGCCGACCTTCTG 180 || |||||||||||||| |||| ||||| |||| |||||||| || || ||||| | Sbjct 6759 TTTTGGCATGACAATATTCGATCCAAAGCATTGGATAGCTGGACACCCGCTGACCTGTTA 6818 Query 181 GCCGCCGTAGAACTGGCAAATAACCAGCTCTATATCACCGTTTTACGCAAGGATTTACGC 240 ||||| || || ||||||||||| || | |||||||| | | ||||| |||||||| Sbjct 6819 GCCGCTGTTGAGCTGGCAAATAATCAACACTATATCAACATGTTACGGCGTGATTTACGT 6878 Query 241 AAAGAAGAACGCCTTCGCGGAGAGGCGCGAGACGAGGGGCTAATCAAAGACCTCCGTAAG 300 || ||||| ||| | ||||| |||||| || || || ||| ||||| | || || Sbjct 6879 AACGAAGAGCGCGTGCGCGGTGAGGCGAGAAACATGGTTGAAATTAAAGAATTGCGCAAA 6938 Query 301 CAAATTGTTGAACTGCAGCGAACCATCCTGGCTCAGCGCCGTGACCTGCAGATCCATTCC 360 ||||| || ||| | ||||| | || |||| ||||| || || ||||| ||||||||| Sbjct 6939 CAAATCGTAGAATTACAGCGCGCGATTTTGGCACAGCGACGAGATCTGCAAATCCATTCC 6998 Query 361 CACGCAACCAACGGCGAAAGCCGCGACCAGAAGAAACGCAATCAG-AATGATCGTGATGC 419 ||||| |||||||| ||||||||||||||| | ||| || ||| ||||| | | || Sbjct 6999 CACGCTACCAACGGTGAAAGCCGCGACCAGC-GTAACAAAAACAGGAATGACAGGAACGC 7057 Query 420 ACGAAACACGAAAAACGAGCATCAGGACCAGGACGACAACCTGATCGCCTTTCCCAAGCA 479 ||| |||| | | ||||| | | ||||| || |||||||| ||||| || || Sbjct 7058 CAGAAGCACGGTCAGTGGTCATCAACGCGAAGACGATAATCTGATCGCGTTTCCAAAACA 7117 Query 480 TGGATAAAAGACT---ATGACGCGAGGTGAGCGTGTAATAGCGTTCATCGAGCGCTTTTG 536 | ||| | | ||||||||||||||||| || ||||||||||| ||||||| ||| Sbjct 7118 T---TAAGGGGCATTCATGACGCGAGGTGAGCGCGTGATAGCGTTCATTGAGCGCTATTG 7174 Query 537 CATCGTGCCGGAAGGCAAGCTTATTGGCCAACCCATGAGGCTGGACCCCTTTCAGAAAGA 596 ||| ||||||||||||||| |||| || || || |||| ||| || ||| |||||||| Sbjct 7175 CATTGTGCCGGAAGGCAAGTTTATCGGACAGCCGATGAAGCTTGATGGCTTCCAGAAAGA 7234 Query 597 TTTCATCCTGGCGGTTTACGACAATCCGGCCGGAACGGATATGGCGATCCTCAGCATCGC 656 || | || | || || ||||| |||| || || | ||| || | |||||||| Sbjct 7235 CTTTCTGCTTGATGTCTATGACAACCCGGTGGGCACCAGCAGGGCAATTTTAAGCATCGC 7294 Query 657 CCGAAAAAATGGTAAGACTGGCCTAATTGCCGGAATTCTGCTGGCTCACCTGGTAGGGCC 716 |||||| || || || || || ||||||| ||||| || || ||||||||||| || || Sbjct 7295 CCGAAAGAACGGGAAAACCGGGTTAATTGCTGGAATACTTCTTGCTCACCTGGTTGGCCC 7354 Query 717 TGAAGCGGTGCAGAACACGCAGATTGTCAGCGGTGCACTCAGCCGGGAACAGGCGGCCAT 776 ||||||||||| ||| | ||||| ||||| || || | ||||| || ||||| || | Sbjct 7355 AGAAGCGGTGCAAAACTCTCAGATCGTCAGTGGGGCGATGAGCCGAGAGCAGGCTGCGCT 7414 Query 777 CGTTTTTAACCTTGCGGTGAAGATGGTCAACCTGAACCCCAAGCTGCAGGAGATTGTGCA 836 || |||| ||| |||| || ||| | || || |||||| ||| ||||| |||||||| Sbjct 7415 GGTCTTTAGCCTGTCGGTCAAAATGATTAATCTTAACCCCGCGCTACAGGACATTGTGCA 7474 Query 837 CATTACGCCAAGCGGCAAAAAGCTGATCGGCCTGCCGTGTAACGTCGAATACAAGGCTTT 896 || | || ||||| || |||||| || || ||||| || || |||||||| | Sbjct 7475 TATCATTCCCAGCGGTAAGCGGCTGATTGGTACCCCTTGTAATGTTGAGTACAAGGCGCT 7534 Query 897 ATCCGCAGAAGGAAAGACGACGCACGGCCTTTCCCCCATTCTGGCCATTCTCGATGAAAC 956 |||| || || || || | ||||| ||||| || | ||||||||||| |||||| Sbjct 7535 GGCCGCCGAGGGTAAAACCGCACACGGTCTTTCTCCAGTGCTGGCCATTCTGGATGAAGT 7594 Query 957 CGGGCAGGT--TAGGGGGCCGCAGGATGATTTTATCGATGCAATAACTACCGCGCAGGGG 1014 |||||||| |||| ||||| ||||||| | || || || |||| | || ||| Sbjct 7595 GGGGCAGGTAGTAGGTCCGCGCAG--TGATTTTGTTGACGCCATTGTTACCTCACAAGGG 7652 Query 1015 GCGCATGAAAACCCGCTGCTGATTGTTATCAGTACGCAGGCAGCAAACGATGCTGACCTG 1074 |||||||| | || ||||||||| ||||||||| ||||| || ||||| || |||||| Sbjct 7653 GCGCATGAGACACCTTTGCTGATTGCTATCAGTACCCAGGCGGCCAACGACGCCGACCTG 7712 Query 1075 CTGAGCATCTGGATTGATGATGCGGTCAAATCGAAAGATCCGCACATCGTATGCCACGTT 1134 ||||| | ||||||||||| |||| | || ||||| || || || ||||| || Sbjct 7713 TTGAGCGTGTGGATTGATGACGCGGCAACTTCTGGCGATCCACATATTGTTTGCCATGTG 7772 Query 1135 TATGAAGCGCCAAAGGACGCTGATATCAGTAAACGCGAGTCCTGGCTGGCTGCGAACCCG 1194 || || ||| ||||| || || | | || | | |||| || || || ||| Sbjct 7773 CATACTGCCGAAAAAGACGCCGACATTATGGATCGGGCTGCATGGCGTGCCGCTAATCCG 7832 Query 1195 GCGCTGGGAACATTCAGGTCAGAAAAAGACATGGCGCGCCAGGCCGAGAAAGCAGGCCGA 1254 ||| ||||||| || | ||| | || |||| ||||| ||| || | || | ||| Sbjct 7833 GCGTTGGGAACCTTTCGTTCACTGGACGAGATGGAGCGCCGGGCAGAAGAGGC--GACGA 7890 Query 1255 --ATGCCAAGCTTCGAAAACACCTTCCGAAATCTCAACCTCAATCAGCGCGTTTCTACCG 1312 ||||| ||| ||||| ||||| || |||||||| || ||||||||||| || || | Sbjct 7891 GGATGCCCAGCAGTGAAAATACCTTTCGTAATCTCAATCTAAATCAGCGCGTATCCACTG 7950 Query 1313 TATCGCCGTTTATCTCCCGCAGCGTGTGGG-AGC---TTTGCGGA--GAGAT---GCCGA 1363 | || ||||| ||||||| | || |||| ||| | | | || || || ||| Sbjct 7951 TGTCACCGTTCGTCTCCCGTAATGTTTGGGAAGCCAGTATTCTGAAGGACATTCGTCCGG 8010 Query 1364 TTAACACGCCGAGGAAGTGGTACGCGGGGCTGGATCTGTCAGCCAGGAACGACTTAACGG 1423 | | || |||| ||||||||||| || ||||||| | ||||||| | || | Sbjct 8011 GCATGATTGTTGGGGAGTGCTACGCGGGGCTCGACCTGTCAGAAAAGAACGACCTTACCG 8070 Query 1424 CGCTGGTTATCGCTGGTGAAGCAGATGATGGTGTCTGGGATGTTTTCCCCTTCTTCTGGA 1483 ||||||| || | || | | | || | | |||| || ||||| |||||||||| Sbjct 8071 CGCTGGTGATTGTGGGACAGGATAAAGAGCGCGACTGGCTGGTATTCCCGTTCTTCTGGA 8130 Query 1484 CACCTCAAAAGACTCTTG-AGGAGCGAACAAAAACGGACCGCGCACCCTATGACGTTTGG 1542 |||| ||||| |||| || || | | || ||||| || ||||| |||||| Sbjct 8131 CACCGGGTAAGAC-CTTGCTCGACCGGGCCAGGCGAGATCGCGCCCCTTATGATGTTTGG 8189 Query 1543 G 1543 | Sbjct 8190 G 8190 >seq2 Length=8990745 Score = 100 bits (110), Expect = 7e-17 Identities = 133/180 (74%), Gaps = 15/180 (8%) Strand=Plus/Minus Query 21438 GAAAAATAATCGTATATGTTTGATTTTATTAGATAA-CACGCGTGATTTAAAATCCCTCG 21496 ||||||| | ||| | | || |||||| ||||| ||||| |||||||||||||||| Sbjct 6246151 GAAAAATTACATTATCTATATG-TTTTATATGATAATCACGCACGATTTAAAATCCCTCG 6246093 Query 21497 GCGTTCGCGCTGTGTGGGTTCAAGTCCCACTCCGGGTACCATGGGAAAACTAGAATAAAA 21556 |||| ||||||||| ||||||||| ||||| ||||| ||||| || | ||||||| Sbjct 6246092 GCGTACGCGCTGTGCGGGTTCAAGCCCCACCCCGGGCACCATCATTTAAGT-TAATAAAA 6246034 Query 21557 TCAA----TGATAAGCAGTGTCGTATAAACCACCGAAAGGTGGTTTTTTATTGTGTTTTT 21612 ||| | |||| | | | || |||||| ||||||||||||| ||||||| Sbjct 6246033 ACAATTGGTTATAAATACTAT----TACGCCACCGCAAGGTGGTTTTTT----TGTTTTT 6245982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127946069415654