Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq6242 89.7 2e-13 seq1653 89.7 2e-13 >seq6242 Length=2873 Score = 89.7 bits (98), Expect = 2e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 28173 TTTGAAGGTGAGCAGGGTAAGCGCGACAGTATTATTGTTGTTGCTCAGCTTTCGCCTGAA 28232 ||||| ||||| || |||||||| ||||| || |||||||| || || ||||| || ||| Sbjct 483 TTTGAGGGTGAACAAGGTAAGCGTGACAGCATCATTGTTGTCGCCCAACTTTCCCCCGAA 424 Query 28233 TTTACCGCGCGCCTGGTTGATCGCTGGCAGGAGCTTGAA 28271 |||||||| | | || ||||| |||||||| || ||| Sbjct 423 TTTACCGCCAGATTAGTAGATCGTTGGCAGGAACTGGAA 385 >seq1653 Length=29478 Score = 89.7 bits (98), Expect = 2e-13 Identities = 196/289 (68%), Gaps = 5/289 (2%) Strand=Plus/Minus Query 7484 CGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAATTAAATCAAGAACTTATCCACCA 7543 || ||||| ||||||||| |||||| | | |||| ||||||||| || |||| | | Sbjct 674 CGTAGGTCATAGGTTCGAATCCTATAGTGCGTACCATTTAAATCAACAAGTTATGCT--A 617 Query 7544 TTCATTACCTCCTGTT-TTTCCGTGTGGGACAAATTTGGGACG-CAATCTCCAAAAATTG 7601 |||| || | ||||| | | || ||| | ||| | | |||| | || Sbjct 616 TTCACCGAGCGCTATACTTTCCAAAAGTGCCAGATTAGTGACATCGCCCGCCAAGACTTC 557 Query 7602 AGTCTATTTGCTTCGCGTGCTCGGTCAGGTGATTAGGTGCCAGATGTGCATAACGGCGGA 7661 ||| |||| | || || ||||| | |||| |||| | ||| || ||||| | | Sbjct 556 -GTCAATTTTTCTGGCATGTTCGGTTAAGTGAACCGGTGATAAATGAGCGTAACGTTGTA 498 Query 7662 CCATTTCTATTGACTCCCATCCTCCCATCTCCTGAAGAACCGAAATCGGGACGCCCGCCT 7721 |||| || || |||||| || ||||| || || | | || | || ||||| | || Sbjct 497 CCATCTCGATACTCTCCCAGCCCCCCATTTCTTGCAATGCAGACAGGGGCACGCCTGACT 438 Query 7722 GAACTAACCAGCTTGCCCAAGTGTGTCTCAGGTCATGGAAGCGGAAATC 7770 |||||||||| |||||||| || |||| ||| ||||| || | ||| || Sbjct 437 GAACTAACCAACTTGCCCAGGTATGTCGCAGATCATGAAATCTGAAGTC 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152203704841362