Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq57 118 9e-22
seq252 91.5 1e-13
seq504 86.0 5e-12
>seq57
Length=2082711
Score = 118 bits (130), Expect = 9e-22
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
|||||| |||||||| || || ||||| || || ||||||||| ||| |||||| ||
Sbjct 1619980 AATGCAGATATTTGTTAAGACCTTAACTGGAAAGACCATTACCTTAGAAGTGGAACCGTC 1619921
Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671
|| ||| | | || | || || |||| || || ||||| || | || |||||
Sbjct 1619920 TGACACGATAGAAAATGTGAAAGCTAAAATTCAA-GATAAAGAAGGTATTCCACCAGATC 1619862
Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731
|||||||| | |||||||| ||||| || ||||||||| | ||| || | || || |
Sbjct 1619861 AACAGAGATTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACTCTGTCTGACTACA 1619802
Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
| || || |||||||||||| | || | ||| |||| | ||||||| ||
Sbjct 1619801 ATATCCAGAAAGAATCTACTTTACATCTTGTACTAAGGCTTAGAGGAGGAAT 1619750
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||||||||| | || || ||||| ||||| ||| || || ||
Sbjct 1620892 AATGCAAATTTTTGTAAAAACCCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTC 1620833
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
||| || | | | | ||| |||||| || ||||| ||| | || || ||
Sbjct 1620832 AGATACAATAGAGAACGTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCCGACCA 1620773
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||| ||| | ||||| || || || || || |||||| ||| | | ||||||||
Sbjct 1620772 ACAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAA 1620713
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
||||| |||||||||||||| || | ||| | ||| | ||||||| ||
Sbjct 1620712 TATTCAGAAAGAATCTACTCTACATCTTGTACTCAGACTGAGAGGAGGAAT 1620662
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||||||||| ||||| || || || ||||||||||| ||| ||||| ||
Sbjct 1618839 ATGCAAATATTTGTGAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTTGAACCATCT 1618780
Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | || | || || |||| || ||||| || ||| | || || ||
Sbjct 1618779 GACACTATTGAAAATGTGAAAGCGAAAATTCAA-GACAAGGAAGGAATACCACCTGACCA 1618721
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
|| || | || || || || ||||||||||||||| | || || | ||||||||
Sbjct 1618720 GCAAAGGTTGATTTTCGCAGGGAAACAATTGGAAGATGGTCGCACCTTGTCAGATTATAA 1618661
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780
||||| || ||||| ||| | || | ||| | ||||| || || ||
Sbjct 1618660 TATTCAGAAGGAATCAACTTTACATCTAGTACTGAGATTGCGTGGCGG 1618613
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| ||||| || ||||| ||||| || ||||| |||||| ||| ||||||||
Sbjct 1619067 ATGCAGATATTCGTGAAAACTTTAACAGGAAAAACGATTACCTTAGAAGTAGAACCTTCT 1619008
Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | || | || || || | || || || || ||| | || |||||
Sbjct 1619007 GATACAATTGAAAATGTAAAAGCTAAGATTCAA-GATAAGGAAGGAATCCCTCCCGATCA 1618949
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
|| || | || || || || ||||| ||||||||| | |||| | | ||||||||
Sbjct 1618948 GCAAAGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGTCGAACTCTTTCTGATTATAA 1618889
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|||||| ||||| || || |||| | || | ||| | |||||||| ||
Sbjct 1618888 CATTCAGAAAGAGTCAACATTGCATCTTGTCCTTAGACTTCGAGGAGGTAT 1618838
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| ||||| || ||||| ||||| || |||||||| ||| ||| ||||| ||
Sbjct 1620435 ATGCAGATATTCGTCAAAACGTTAACCGGAAAAACCATCACCTTAGAAGTAGAACCATCT 1620376
Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | || | || || |||| || || ||||| || | || ||||||
Sbjct 1620375 GATACAATTGAAAATGTGAAAGCTAAAATTCAA-GATAAAGAAGGTATTCCACCAGATCA 1620317
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
|||||| | |||||||| ||||| || ||||||||| | || || | ||||| ||
Sbjct 1620316 ACAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACACTGTCTGATTACAA 1620257
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762
|| || ||||| || || |||| ||||
Sbjct 1620256 TATACAGAAAGAGTCCACGTTGCATTTGGT 1620227
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
|||||| || || || || || | || || ||||| ||||| ||| ||||||||
Sbjct 1621120 AATGCAGATCTTCGTCAAGACCCTTACAGGAAAAACGATTACACTTGAAGTTGAACCTTC 1621061
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | || | ||| ||||| || ||||| ||| | || ||| ||
Sbjct 1621060 TGACACAATCGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCGCCAGACCA 1621001
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||| ||| | ||||| || || || || || |||||| ||| | | ||||||||
Sbjct 1621000 ACAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAA 1620941
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
||||| |||||||||||||| || | ||| | ||| || ||||||| ||
Sbjct 1620940 TATTCAGAAAGAATCTACTCTACATCTTGTACTCAGACTAAGAGGAGGAAT 1620890
>seq252
Length=802098
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727
||||| |||||| | || ||||| || || || ||||||||| | |||| | | |||
Sbjct 443804 GATCAGCAGAGATTAATTTTTGCCGGTAAGCAGTTGGAAGATAACAGAACTCTTTCTGAT 443863
Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780
|||||||| ||||||||||||||| | ||| |||| | ||| || |||||||
Sbjct 443864 TATAACATACAAAAAGAATCTACTTTACACTTGGTGCTCAGACTAAGAGGAGG 443916
>seq504
Length=327254
Score = 86.0 bits (94), Expect = 5e-12
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609
||| |||||||| ||||| ||||| || ||||||||||| |||||| || |||||
Sbjct 214297 AAATATGCAAATTTTTGTGAAAACTTTGACGGGTAAAACAATTACCCTTGAGGTTGAACC 214238
Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669
||||| || | | || | ||| ||| ||| || ||||| ||| | || |||
Sbjct 214237 CTCAGACACAATTGAAAATGTTAAGGCAAAGATCCAAGATAAAGAAGGAATTCCTCCAGA 214178
Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT 28709
||| || ||| | || ||||| |||||||| | ||||||
Sbjct 214177 TCAGCAAAGATTGATTTTTGCTGGCAAACAGCTAGAAGAT 214138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425319061922523
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |