Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_020080.1
Length=174413
Score E
Sequences producing significant alignments: (Bits) Value
seq2248 113 5e-20
>seq2248
Length=16282
Score = 113 bits (124), Expect = 5e-20
Identities = 224/327 (69%), Gaps = 10/327 (3%)
Strand=Plus/Minus
Query 41613 ATTGCGATTGGGAATGGTTACGTAGCCAG-ATTAAGAAATACGGCTTGCGCAACTCTACT 41671
||| |||||||||| | || | ||| || || | | |||| |||| ||||| ||
Sbjct 518 ATTACGATTGGGAAGCACTGCGC-GACAGTATCAAAACACACGGTCTGCGTAACTCCACG 460
Query 41672 CTTTCTGCTTTAATGCCTTGTGAAAGTAGTTCACAGGTTAGTAACTCTACCAACGGGATC 41731
|| ||||| || ||||| | |||| ||||| || ||| | |||||||| |||
Sbjct 459 CTCTCTGCGTTGATGCCGTCGGAAACCTCGTCACAAATTTCCAACGCCACCAACGGTATC 400
Query 41732 GAACCTCCGCGCGGTTTAGTGAGTATCAAATCTTCGAAAGAAGGACACTATAA-CCAGGT 41790
||||| || |||||| | |||||||| | || ||||| || || | | ||||||
Sbjct 399 GAACCACCACGCGGTCACATCAGTATCAAGGCGTCAAAAGACGG-CATTTTGCGCCAGGT 341
Query 41791 TGTGCCTAACCAGAATAACCAGATTGATTTCTATGATCTGCTCTGGGATATGGCTAAACG 41850
||||| | | || | || || ||| ||| || | || ||||| ||| | ||
Sbjct 340 GGTGCCGGATTACAAAACCCTGAAGGATGCCTACGAATTACTGTGGGAAATGCCGAAC-- 283
Query 41851 CGGTAACAAAGGGTATCTGTCTCATGTAGCAGTTATGCAGAAGTTTGTCGATCAGTCTAT 41910
|| | || || ||| | || | | ||||||||||||||||||||| ||||
Sbjct 282 ----AATGACGGCTACCTGCAACTGGTTGGGCTGATGCAGAAGTTTGTCGATCAGGCTAT 227
Query 41911 TTCTGCAAACACCAACTATGACCCGGC 41937
|||||| ||||||||||| || |||||
Sbjct 226 TTCTGCCAACACCAACTACGATCCGGC 200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557878255747960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |