Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq2248 113 5e-20 >seq2248 Length=16282 Score = 113 bits (124), Expect = 5e-20 Identities = 224/327 (69%), Gaps = 10/327 (3%) Strand=Plus/Minus Query 41613 ATTGCGATTGGGAATGGTTACGTAGCCAG-ATTAAGAAATACGGCTTGCGCAACTCTACT 41671 ||| |||||||||| | || | ||| || || | | |||| |||| ||||| || Sbjct 518 ATTACGATTGGGAAGCACTGCGC-GACAGTATCAAAACACACGGTCTGCGTAACTCCACG 460 Query 41672 CTTTCTGCTTTAATGCCTTGTGAAAGTAGTTCACAGGTTAGTAACTCTACCAACGGGATC 41731 || ||||| || ||||| | |||| ||||| || ||| | |||||||| ||| Sbjct 459 CTCTCTGCGTTGATGCCGTCGGAAACCTCGTCACAAATTTCCAACGCCACCAACGGTATC 400 Query 41732 GAACCTCCGCGCGGTTTAGTGAGTATCAAATCTTCGAAAGAAGGACACTATAA-CCAGGT 41790 ||||| || |||||| | |||||||| | || ||||| || || | | |||||| Sbjct 399 GAACCACCACGCGGTCACATCAGTATCAAGGCGTCAAAAGACGG-CATTTTGCGCCAGGT 341 Query 41791 TGTGCCTAACCAGAATAACCAGATTGATTTCTATGATCTGCTCTGGGATATGGCTAAACG 41850 ||||| | | || | || || ||| ||| || | || ||||| ||| | || Sbjct 340 GGTGCCGGATTACAAAACCCTGAAGGATGCCTACGAATTACTGTGGGAAATGCCGAAC-- 283 Query 41851 CGGTAACAAAGGGTATCTGTCTCATGTAGCAGTTATGCAGAAGTTTGTCGATCAGTCTAT 41910 || | || || ||| | || | | ||||||||||||||||||||| |||| Sbjct 282 ----AATGACGGCTACCTGCAACTGGTTGGGCTGATGCAGAAGTTTGTCGATCAGGCTAT 227 Query 41911 TTCTGCAAACACCAACTATGACCCGGC 41937 |||||| ||||||||||| || ||||| Sbjct 226 TTCTGCCAACACCAACTACGATCCGGC 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557878255747960