Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq57 140 3e-28
seq504 125 6e-24
seq126 114 1e-20
seq33 105 6e-18
seq252 89.7 5e-13
>seq57
Length=2082711
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| |||| || || || || || |||||||| || ||||||||| | |
Sbjct 1620207 ATGCAGATCTTCGTTAAGACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCT 1620148
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| |||||| ||||| ||||| || ||||||||||| || || ||
Sbjct 1620147 GACACAATTGAAAATGTAAAAGCGAAGATTCAAGATAAGGAAGGAATACCACCTGACCAG 1620088
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | ||||| || || ||||||||| | || ||| | | | | | || ||||| ||
Sbjct 1620087 CAAAGGTTGATTTTCGCTGGGAAACAGTTAGAAGATGGGCGCACCCTTTCTGATTACAAT 1620028
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| || ||||| || || || | || || || || | |||||
Sbjct 1620027 ATTCAGAAAGAATCAACTCTTCATCTTGTCTTAAGACTGAGAGGAGG 1619981
Score = 138 bits (152), Expect = 1e-27
Identities = 156/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | ||||| |||| || ||||| ||||| | ||||||||| | |
Sbjct 1619067 ATGCAGATATTCGTGAAAACTTTAACAGGAAAAACGATTACCTTAGAAGTAGAACCTTCT 1619008
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| |||||| ||||| ||||| || |||||||| |||||||||||
Sbjct 1619007 GATACAATTGAAAATGTAAAAGCTAAGATTCAAGATAAGGAAGGAATCCCTCCCGATCAG 1618948
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | ||||| || || ||||||||| |||| ||| ||| | || |||||||||
Sbjct 1618947 CAAAGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGTCGAACTCTTTCTGATTATAAC 1618888
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
||||| || || || ||| | || ||||
Sbjct 1618887 ATTCAGAAAGAGTCAACATTGCATCTTG 1618860
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | ||||| | || || ||||| ||||| || ||||| ||| | |
Sbjct 1618839 ATGCAAATATTTGTGAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTTGAACCATCT 1618780
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || ||| || || |||||||| ||||||||||| || || ||
Sbjct 1618779 GACACTATTGAAAATGTGAAAGCGAAAATTCAAGACAAGGAAGGAATACCACCTGACCAG 1618720
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | ||||| || || |||||||| |||| ||| | | | |||||||||||||
Sbjct 1618719 CAAAGGTTGATTTTCGCAGGGAAACAATTGGAAGATGGTCGCACCTTGTCAGATTATAAT 1618660
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| |||||||| || |||| | || || ||||||| || ||
Sbjct 1618659 ATTCAGAAGGAATCAACTTTACATCTAGTACTGAGATTGCGTGGCGG 1618613
Score = 123 bits (136), Expect = 2e-23
Identities = 153/208 (74%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | ||||| || || || ||||||||||| || ||||| || | |
Sbjct 1620891 ATGCAAATTTTTGTAAAAACCCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTCA 1620832
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | ||||| || ||||| || ||||||||||| || ||||| |||
Sbjct 1620831 GATACAATAGAGAACGTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCCGACCAA 1620772
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | || ||||| ||||| || ||| | || ||| | | | |||||||||||
Sbjct 1620771 CAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAAT 1620712
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
||||| || ||||| || ||||| ||||
Sbjct 1620711 ATTCAGAAAGAATCTACTCTACATCTTG 1620684
Score = 120 bits (132), Expect = 3e-22
Identities = 152/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || ||||| ||||| || ||||| ||| | |
Sbjct 1621119 ATGCAGATCTTCGTCAAGACCCTTACAGGAAAAACGATTACACTTGAAGTTGAACCTTCT 1621060
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || || || || ||||| ||||||||||| || || || |||
Sbjct 1621059 GACACAATCGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCGCCAGACCAA 1621000
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | || ||||| ||||| || ||| | || ||| | | | |||||||||||
Sbjct 1620999 CAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAAT 1620940
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
||||| || ||||| || ||||| ||||
Sbjct 1620939 ATTCAGAAAGAATCTACTCTACATCTTG 1620912
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | ||||| || || || ||||||||||| || ||||| || | |
Sbjct 1619751 ATGCAAATTTTTGTGAAAACTCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTCT 1619692
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | ||||| || ||||| || ||||||||||| || || |||||
Sbjct 1619691 GATACAATAGAGAACGTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAG 1619632
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || ||||| || || ||| | || ||| ||| | || ||||| ||
Sbjct 1619631 CAGCGTCTTATTTTTGCTGGAAAGCAGTTAGAAGATGGCCGAACTCTATCTGATTACAAT 1619572
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
||||||||||| || || || || |||||
Sbjct 1619571 ATTCAAAAGGAGTCCACCCTTCATTTGGT 1619543
Score = 114 bits (126), Expect = 1e-20
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || || || ||||| || ||||| ||| | |
Sbjct 1619523 ATGCAGATCTTTGTGAAGACTCTTACAGGAAAGACCATTACACTTGAAGTTGAACCATCT 1619464
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || || || ||||| ||||||||||| || || || |||
Sbjct 1619463 GACACTATCGAAAATGTTAAGGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGACCAA 1619404
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | || ||||| ||||| || ||||| || ||| | | | |||||||||||
Sbjct 1619403 CAAAGGTTAATCTTCGCCGGAAAGCAGCTAGAAGATGGCCGCACTCTCTCAGATTATAAT 1619344
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || ||||| ||||
Sbjct 1619343 ATCCAGAAAGAATCAACTCTACATCTTG 1619316
Score = 114 bits (126), Expect = 1e-20
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | |||||| ||||||| ||||| || || | ||||||||| | |
Sbjct 1620435 ATGCAGATATTCGTCAAAACGTTAACCGGAAAAACCATCACCTTAGAAGTAGAACCATCT 1620376
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| || || ||||| |||||||| || || || ||||||
Sbjct 1620375 GATACAATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 1620316
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881
|| | ||||||||||| || || ||| |||| ||| ||| | || |||| ||||| |
Sbjct 1620315 CAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCG-CACAC-TGTCTGATTACA 1620258
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912
| || || || || || || | || |||||
Sbjct 1620257 ATATACAGAAAGAGTCCACGTTGCATTTGGT 1620227
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | ||||| || || || ||||| ||||| || ||||| || || |
Sbjct 1620663 ATGCAAATTTTTGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTGGAGCCCTCT 1620604
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| |||||| || ||||| || || |||||||| || || |||||
Sbjct 1620603 GATACTATTGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATCCCACCAGATCAG 1620544
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || ||||| || || ||| |||| ||| ||| | || ||||| ||
Sbjct 1620543 CAGCGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTACAAT 1620484
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
||||||||||| || || || || || ||
Sbjct 1620483 ATTCAAAAGGAGTCCACCCTTCATTTAGT 1620455
Score = 105 bits (116), Expect = 6e-18
Identities = 149/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| |||| || |||| || || || ||||| | ||||| ||| | |
Sbjct 1619979 ATGCAGATATTTGTTAAGACCTTAACTGGAAAGACCATTACCTTAGAAGTGGAACCGTCT 1619920
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| |||||| || ||| || || ||||| |||||||| || || || ||||||
Sbjct 1619919 GACACGATAGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 1619860
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||||||| || || ||| |||| ||| | | |||| || || ||
Sbjct 1619859 CAGAGATTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACTCTGTCTGACTACAAT 1619800
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || ||||| || |||| ||||
Sbjct 1619799 ATCCAGAAAGAATCTACTTTACATCTTG 1619772
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| || || || ||||| ||||| || ||||| || || |
Sbjct 1619295 ATGCAAATTTTCGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTTGAGCCCTCT 1619236
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || ||| || ||||| || || |||||||| || || |||||
Sbjct 1619235 GATACTATTGAAAATGTTAAAGCCAAAATCCAGGATAAGGAAGGAATCCCACCAGATCAG 1619176
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || ||||| || || ||| |||| ||| ||| | || ||||| ||
Sbjct 1619175 CAGCGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTACAAT 1619116
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
||||||||||| || || || || || ||
Sbjct 1619115 ATTCAAAAGGAGTCCACCCTTCATTTAGT 1619087
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | |||||| | || || || || || || || ||||| || | |
Sbjct 1621347 ATGCAGATCTTCGTAAAAACGTTGACGGGGAAGACAATAACTCTTGAAGTTGAGCCTTCA 1621288
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| ||||| || || ||||| || |||||||| ||||| |||||
Sbjct 1621287 GATACTATTGAAAACGTAAAGGCTAAAATTCAAGATAAGGAAGGAATCCCTCCTGATCAG 1621228
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||||| || || ||||| || || ||| |||| ||| | | | | || ||||| ||
Sbjct 1621227 CAACGATTAATTTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACCCTATCCGATTACAAT 1621168
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || ||||| || || | || |||||
Sbjct 1621167 ATACAGAAGGAGTCCACGTTGCATTTGGT 1621139
>seq504
Length=327254
Score = 125 bits (138), Expect = 6e-24
Identities = 143/191 (75%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | ||||| | || |||||||| ||||| || || || ||| || |
Sbjct 214293 ATGCAAATTTTTGTGAAAACTTTGACGGGTAAAACAATTACCCTTGAGGTTGAACCCTCA 214234
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || || |||||||||||| ||||||||||| ||||| |||||
Sbjct 214233 GACACAATTGAAAATGTTAAGGCAAAGATCCAAGATAAAGAAGGAATTCCTCCAGATCAG 214174
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | ||||| ||||| || |||||||| || ||| | | | | || ||||| ||
Sbjct 214173 CAAAGATTGATTTTTGCTGGCAAACAGCTAGAAGATGGACGCACCCTTTCCGATTACAAT 214114
Query 24884 ATTCA-AAAGG 24893
|| || |||||
Sbjct 214113 ATCCAGAAAGG 214103
>seq126
Length=1333976
Score = 114 bits (126), Expect = 1e-20
Identities = 96/118 (81%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182
||||| |||||||| | ||| ||||| ||||| || || || || ||||||||||||||
Sbjct 1333101 TATTCAACAATTTCCGTACATAAATTGCTACATTTAATAGTTCCCAAATTTTGTTGATTT 1333160
Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240
||| || ||||| | ||||||||| | |||||||||| ||||||||||||||||
Sbjct 1333161 GATTTACGATTACATGAATCTTTGTATAACATATACGGTACTCCAGTTTCCACTTGTG 1333218
>seq33
Length=2490231
Score = 105 bits (116), Expect = 6e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 126034 GCTTTCGCTATAGTGGAAGGCGTGTTTTTCTCGGGTAGTTTTGCGGCTAttttttttATA 126093
||||| ||| ||||||||||| |||||||| ||||| ||||||||||| |||| ||
Sbjct 182530 GCTTTTGCTGCTGTGGAAGGCGTATTTTTCTCTGGTAGCTTTGCGGCTATATTTTGGTTA 182589
Query 126094 AAGACAAAGGGTATAATGCCCGGTCTAACGTTCAGCAACGAGTTGATTTCTCGTGACGAA 126153
|||| || || ||||||| || || || |||||||| || ||||||||| | || |||
Sbjct 182590 AAGAAAAGAGGATTAATGCCAGGGCTTACTTTCAGCAATGAATTGATTTCTAGAGATGAA 182649
Query 126154 G 126154
|
Sbjct 182650 G 182650
>seq252
Length=802098
Score = 89.7 bits (98), Expect = 5e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864
|||||||||||| ||||| || | || || |||||||| || ||| |||| ||| ||
Sbjct 443791 AGGAATACCTCCTGATCAGCAGAGATTAATTTTTGCCGGTAAGCAGTTGGAAGATAACAG 443850
Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913
|| | || ||||||||||| ||||| ||||| || |||||||||||
Sbjct 443851 AACTCTTTCTGATTATAACATACAAAAAGAATCTACTTTACACTTGGTG 443899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449804600542360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |