Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq3708 116 9e-22 seq1653 107 5e-19 seq3409 95.1 3e-15 seq1206 95.1 3e-15 >seq3708 Length=7132 Score = 116 bits (128), Expect = 9e-22 Identities = 237/351 (68%), Gaps = 1/351 (0%) Strand=Plus/Minus Query 13902 GGGGAAAACATCCTTTCCTGCGATACGGAGAAGAGTATCCGGGAGCGATTTTCTGTTTAC 13961 || ||||| || || |||| |||||||| |||||||||| || || ||||| | || Sbjct 2404 GGAGAAAATATTCTCACCTGTGATACGGAACAGAGTATCCGCGAACGCTTTTCGGAATAT 2345 Query 13962 CAGGTGGCGGGGCAGCGTGCCGGAAACGACGATGATTTCGGTGAGGCCACCACCACCGCG 14021 ||||||||||| || || | ||| | || | |||| |||||| ||||| || || Sbjct 2344 CAGGTGGCGGGTCAACGCTCGGGAGATGATGCTGATCACGGTGAAGCCACGCTAACGGCA 2285 Query 14022 CTGCGGGCCCGCACAGAGGACGCATTTATTGCCCGTTACCGTCCGATGTATATCAGGCAG 14081 ||||| ||| | | | ||| ||| | || || || ||| ||||| ||| Sbjct 2284 CTGCGAGCCAGAGCCAAAGACAGCCAGATTACGCGCTATCGCCCGCAACATATCCACCAG 2225 Query 14082 ACAGGGCAGGCTACGGGGGCAGGCTGTATTGCGCGTGCTGACTTTGAAGCCCGGCAACGG 14141 | || | | || || || ||||| || || ||| ||||||||| | || | Sbjct 2224 GCCGGTAATACAACCGGAGCCAGCTGTCGCGCTCGCAGTGAATTTGAAGCCAGACAGTGT 2165 Query 14142 GCGGCGCGGACGGATGAAACCACCTATGTGGTGCAGGGCTGGCGACAGGGTAACGGTACG 14201 || || | || || ||||| |||||| || || || | ||| || ||| |||| | Sbjct 2164 GCAGCCAGAACCGAGGAAACGACCTATACAGTACAAGGTTAGCGGCAAGGTGACGGCAGC 2105 Query 14202 CTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCCGGT-CTGTGGTTT 14251 || ||| ||| || || || || ||||| ||||||||||| ||| | ||| Sbjct 2104 CTCTGGAAGCATAATCAACGCGTCATTGTGTTTGATCCGGTGCTGGGCTTT 2054 >seq1653 Length=29478 Score = 107 bits (118), Expect = 5e-19 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 23327 GTCTATTTGCCGTGCGTGTTCGGTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAAC 23386 ||| |||| | || |||||||| | |||| |||| | ||||| || || | || Sbjct 556 GTCAATTTTTCTGGCATGTTCGGTTAAGTGAACCGGTGATAAATGAGCGTAACGTTGTAC 497 Query 23387 CATTTCGATAGACTCCCAGCCTCCCATTTCCTGTAAAACTGACAACGGGACTCCGGCTTG 23446 ||| |||||| ||||||||| |||||||| || || | |||| || || || | || Sbjct 496 CATCTCGATACTCTCCCAGCCCCCCATTTCTTGCAATGCAGACAGGGGCACGCCTGACTG 437 Query 23447 AACCAGCCAACTTGCCCAGGTGTGTCTCAAGTCGTGAAATCTGAAATCA 23495 ||| | ||||||||||||||| |||| || || ||||||||||| ||| Sbjct 436 AACTAACCAACTTGCCCAGGTATGTCGCAGATCATGAAATCTGAAGTCA 388 >seq3409 Length=8325 Score = 95.1 bits (104), Expect = 3e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 32936 GAAGAAGAAACTACGGGAGATTCCCGTAGTATTCCTGTCATCACCATTCAGGGGCGCAAT 32995 ||| | |||||||||||| | ||||||| | | | |||| ||| ||||||| || Sbjct 4380 GAAAATGAAACTACGGGAAAACTCCGTAGTTTAGCCTTTTTCACTATTGAGGGGCGAAAC 4439 Query 32996 GGTGGGACGTATGTCTGTAAAGAGCTGGTCTATGCATATGCAATGTGGATCAGCCCGGCA 33055 |||||||| || || |||||||| | || || || ||||| |||||||| ||||| | Sbjct 4440 GGTGGGACTTACGTGTGTAAAGAATTAGTTTACGCCTATGCTATGTGGATTAGCCCCAAA 4499 Query 33056 TTCAGCTTAAAAGTGATACGTACTTTTGATGC 33087 ||| | | | || ||||| || |||||||| Sbjct 4500 TTCCACCTTCATGTTATACGCACGTTTGATGC 4531 >seq1206 Length=31275 Score = 95.1 bits (104), Expect = 3e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 32936 GAAGAAGAAACTACGGGAGATTCCCGTAGTATTCCTGTCATCACCATTCAGGGGCGCAAT 32995 ||| | |||||||||||| | ||||||| | | | |||| ||| ||||||| || Sbjct 16906 GAAAATGAAACTACGGGAAAACTCCGTAGTTTAGCCTTTTTCACTATTGAGGGGCGAAAC 16965 Query 32996 GGTGGGACGTATGTCTGTAAAGAGCTGGTCTATGCATATGCAATGTGGATCAGCCCGGCA 33055 |||||||| || || |||||||| | || || || ||||| |||||||| ||||| | Sbjct 16966 GGTGGGACTTACGTGTGTAAAGAATTAGTTTACGCCTATGCTATGTGGATTAGCCCCAAA 17025 Query 33056 TTCAGCTTAAAAGTGATACGTACTTTTGATGC 33087 ||| | | | || ||||| || |||||||| Sbjct 17026 TTCCACCTTCATGTTATACGCACGTTTGATGC 17057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127079039713680