Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq57 163 2e-35 seq504 138 9e-28 >seq57 Length=2082711 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| | ||| || | ||| | || ||||| || ||||| |||||||| | Sbjct 1618612 TCCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATCTGA 1618671 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||||| ||| || | |||||| || || | ||||| |||||||| || || || Sbjct 1618672 CAAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGTGG 1618731 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || |||||||| |||||| | ||| ||| |||| | ||||||||| |||| | Sbjct 1618732 TATTCCTTCCTTGTCTTG-AATTTTCGCTTTCACATTTTCAATAGTGTCAGATGGTTCAA 1618790 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||| || ||||| ||||| || ||||| |||||||| ||||| Sbjct 1618791 CTTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCAT 1618839 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || || | ||| || |||||||| | |||||| ||||| || || || ||||| | Sbjct 1620208 TCCACCTCTGAGACGAAGAACCAAATGCAACGTGGACTCTTTCTGTATATTGTAATCAGA 1620267 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || | || ||||| ||| | ||||| || || ||||| || || Sbjct 1620268 CAGTGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAACCTCTGTTGATCTGGTGG 1620327 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| ||||| ||||| |||||| | ||| ||| |||| | || ||||| |||||| Sbjct 1620328 AATACCTTCTTTATCTTG-AATTTTAGCTTTCACATTTTCAATTGTATCAGATGGTTCTA 1620386 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | || || ||||| || ||||| ||||| || ||||||||||| Sbjct 1620387 CTTCTAAGGTGATGGTTTTTCCGGTTAACGTTTTGACGAATATCTGCAT 1620435 Score = 150 bits (166), Expect = 1e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | | || || | ||| | || |||||||| || || || || || | Sbjct 1619752 TCCTCCTCTAAGCCTTAGTACAAGATGTAAAGTAGATTCTTTCTGGATATTGTAGTCAGA 1619811 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || | || ||||| ||| | |||||||| || ||||| || || Sbjct 1619812 CAGAGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAATCTCTGTTGATCTGGTGG 1619871 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| ||||| ||||| |||||| | ||| ||| |||||| |||||||| |||| | Sbjct 1619872 AATACCTTCTTTATCTTG-AATTTTAGCTTTCACATTTTCTATCGTGTCAGACGGTTCCA 1619930 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | || || || || ||||||||||| |||||||||||||||||| Sbjct 1619931 CTTCTAAGGTAATGGTCTTTCCAGTTAAGGTCTTAACAAATATCTGCATT 1619980 Score = 150 bits (166), Expect = 1e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| | | || | |||||| || |||||||| ||||| || ||||| | Sbjct 1619980 TCCTCCTCTCAGTCTTAAGACAAGATGAAGAGTTGATTCTTTCTGAATATTGTAATCAGA 1620039 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || | ||||| ||||| | ||||| |||||||| || || || Sbjct 1620040 AAGGGTGCGCCCATCTTCTAACTGTTTCCCAGCGAAAATCAACCTTTGCTGGTCAGGTGG 1620099 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || || ||||| ||| || | ||| ||| |||| | ||||||||| |||||| Sbjct 1620100 TATTCCTTCCTTATCTTG-AATCTTCGCTTTTACATTTTCAATTGTGTCAGAAGGTTCTA 1620158 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||||| ||||| || || || | || ||||| || ||||||||| Sbjct 1620159 CTTCAAGAGTAATAGTCTTTCCTGTAAGAGTCTTAACGAAGATCTGCATT 1620208 Score = 138 bits (152), Expect = 9e-28 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || || ||||| |||||||||||||| | || || ||| ||| || | ||||| ||| Sbjct 1618871 GTTGACTCTTTCTGAATGTTATAATCAGAAAGAGTTCGACCATCTTCCAACTGTTTCCCA 1618930 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 || | ||||| ||||||||||| || || || || || || ||||| ||| || | ||| Sbjct 1618931 GCGAAAATCAACCTTTGCTGATCGGGAGGGATTCCTTCCTTATCTTG-AATCTTAGCTTT 1618989 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| |||| | || |||||| |||||||||| | || || ||||| || ||||| || Sbjct 1618990 TACATTTTCAATTGTATCAGAAGGTTCTACTTCTAAGGTAATCGTTTTTCCTGTTAAAGT 1619049 Query 29769 TTTAACAAATATCTGCAT 29786 ||| || ||||||||||| Sbjct 1619050 TTTCACGAATATCTGCAT 1619067 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || || | || || |||||||| | |||||| || || || || || ||||| | Sbjct 1621120 TCCACCTCTGAGTCGAAGAACCAAATGCAACGTGGACTCCTTCTGTATATTGTAATCGGA 1621179 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| ||| ||| || | || || |||||| | || |||| ||||||||| || || Sbjct 1621180 TAGGGTACGACCATCTTCCAACTGCTTTCCAGCAAAAATTAATCGTTGCTGATCAGGAGG 1621239 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || || ||||| |||||| | || || |||| | ||| || ||| | || | Sbjct 1621240 GATTCCTTCCTTATCTTG-AATTTTAGCCTTTACGTTTTCAATAGTATCTGAAGGCTCAA 1621298 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||||||| || || || || || ||||| || || ||||||||||| Sbjct 1621299 CTTCAAGAGTTATTGTCTTCCCCGTCAACGTTTTTACGAAGATCTGCATTTT 1621350 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| | || || | ||| || || |||||||| ||||| |||||||| | Sbjct 1620664 TCCTCCTCTCAGTCTGAGTACAAGATGTAGAGTAGATTCTTTCTGAATATTATAATCTGA 1620723 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||||| ||| || | || || || || | || |||||||| || || || || Sbjct 1620724 AAGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGATTAATCTTTGTTGGTCGGGTGG 1620783 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || ||||| || || | ||| || || | |||| || || || | || || Sbjct 1620784 AATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCTGACGGCTCAAC 1620843 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| |||||||| ||||| | |||||| ||||| || |||||| Sbjct 1620844 TTCAAGAGTAATAGTTTTTCCAGTCAGGGTTTTTACAAAAATTTGCATT 1620892 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| ||||| || |||||||| || ||||| | | || || | Sbjct 1619537 CGAAGAACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCA 1619596 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || || |||||| | || | | |||||||| || ||||| || ||||| Sbjct 1619597 TCTTCTAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTA 1619656 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || || | |||| || ||||| | || ||||||||||| ||| Sbjct 1619657 TCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCAGACGGCTCAACTTCAAGAGTAATA 1619716 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| ||||| | ||||| ||||| || |||||| Sbjct 1619717 GTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCATT 1619752 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || || |||||||| ||||| || |||||||| || ||||| | Sbjct 1620437 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1620496 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | || || |||||| | || | | |||||||| || || Sbjct 1620497 AGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGG 1620556 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | ||| ||| ||| |||| | ||| ||||| | || ||| Sbjct 1620557 ATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCAATAGTATCAGAGGGCTCCACT 1620616 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || ||||| ||||| | ||||| ||||| || |||||| Sbjct 1620617 TCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCATT 1620664 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || || |||||||| ||||| || |||||||| || ||||| | Sbjct 1619069 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1619128 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | || || |||||| | || | | |||||||| || || Sbjct 1619129 AGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGG 1619188 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | ||| ||| ||| |||| | ||| ||||| | || ||| Sbjct 1619189 ATTCCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCAATAGTATCAGAGGGCTCAACT 1619248 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || ||||| ||||| | ||||| || || || |||||| Sbjct 1619249 TCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACGAAAATTTGCATT 1619296 >seq504 Length=327254 Score = 138 bits (152), Expect = 9e-28 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| || || || ||||| | || |||||| ||| || || |||||||||||| | | Sbjct 214104 CTTTCTGGATATTGTAATCGGAAAGGGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAAA 214163 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 |||||||||||||||| || ||||| || ||||| ||||| | ||| || ||| ||| Sbjct 214164 TCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATCTTTGCCTTAACATTTT 214223 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||||| || |||| || ||||| || || ||||| || || || ||||| |||| Sbjct 214224 CAATTGTGTCTGAGGGTTCAACCTCAAGGGTAATTGTTTTACCCGTCAAAGTTTTCACAA 214283 Query 29777 ATATCTGC--ATTTTAAA 29792 | || ||| |||||||| Sbjct 214284 AAATTTGCATATTTTAAA 214301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385141561116717