Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_023555.1 Length=43017 Score E Sequences producing significant alignments: (Bits) Value seq1601 360 5e-95 seq10505 183 8e-42 seq2192 178 4e-40 >seq1601 Length=30922 Score = 360 bits (398), Expect = 5e-95 Identities = 391/516 (76%), Gaps = 2/516 (0%) Strand=Plus/Plus Query 14317 CCTTCCTGTCGCTGGTGGTTGGCGTCGGCCACCCAGTACAATCGCTGTCGGATGTGCGGC 14376 |||| | ||| | || || |||||||||||||||||| | ||| |||||| |||||||| Sbjct 15100 CCTTTCCGTCCCGCGTAGTGGGCGTCGGCCACCCAGTAAAGTCGTTGTCGGCTGTGCGGC 15159 Query 14377 GCACCGACGCCCGCAGCGCATAAATCTGCCGCTGCGCTGGCGTATCCCGCGTTTTCCAAG 14436 ||||||| |||||||||||||||||| |||||| ||||||| | | ||||| | Sbjct 15160 GCACCGAAGCCCGCAGCGCATAAATCAAGCGCTGCTGTGGCGTAGTTCTCTGCTTCCAGG 15219 Query 14437 TCAGTTTGTACAATGTCGAGCCAACCGAGGCCGTCCTTGCTTGAAACCTGCTCACCAAAG 14496 ||| | ||||||| |||||||||| |||| ||||| ||||| |||||||||||||||| Sbjct 15220 TCAATCTGTACAAGGTCGAGCCAAGCGAGTCCGTCAGGGCTTGCAACCTGCTCACCAAAG 15279 Query 14497 ACGACGCTAGGGCTGCACTGGCTGATGAGATGGAAGAATGCCGGCCACAGGTGCCGCTCG 14556 | ||| ||| ||||||| |||||| |||||||| || ||||| | | |||||||| Sbjct 15280 ATAACGTCAGGTTTGCACTGCTGGATGAGGTGGAAGAACGCGGGCCATAAGCGCCGCTCG 15339 Query 14557 TCAGCAACCCCTGCGCCTTTGCCTGCCGCGCTGAAAGGCTGGCAAGGGCAAGATCCGGTC 14616 ||||||| || || |||||||||| ||||||||||||||| || ||| || ||| Sbjct 15340 TCAGCAAATCCCTTTCCCTTGCCTGCCGGGCTGAAAGGCTGGCACGGACAACTGCCTGTC 15399 Query 14617 CAGACCGGTCGATCATCCGGCCATCCTGCGCGGCGCAGGGCGAGCGACCATACTCCAATT 14676 || || ||| |||||| ||||| | | ||||||||| ||||| || ||| Sbjct 15400 CACACGGGTTTATCATCGGGCCAGCACACTTTTCGCAGGGCGTATGACCAGGTGCCGATT 15459 Query 14677 CCGGCGAAGAAGTGGCACTGGGT-AAATTCGGTGAGTTCATTTGGTGTTATATCCTCGAT 14735 ||||||||||| || |||||||| | || || | |||| ||| | || |||||||| Sbjct 15460 CCGGCGAAGAAATGACACTGGGTGTAGCTCTGT-AACTCATCGGGTTTAATCTCCTCGAT 15518 Query 14736 CGATCGTTCGTCAACAATACCAGGGGCGATATGCCCTTCTGCGATAAGATTACGCAGCCA 14795 || ||||| || ||| |||||| || |||||||| | || || || || |||||||| Sbjct 15519 TGAACGTTCATCGACATCACCAGGCGCAATATGCCCGGCGGCCATCAGGTTTCGCAGCCA 15578 Query 14796 TTGCGCGGCGTAGGGGTCAATTTCATTGTAATAGGC 14831 ||| | | ||||||||| | || || || |||| Sbjct 15579 CTGCCCCACATAGGGGTCAGTGTCGTTATACCAGGC 15614 Score = 187 bits (206), Expect = 7e-43 Identities = 151/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 13895 GCGCACAGATGGCGTTCCCGTAGGCGCGCAATCGTCCCACTCGGGAGGTAATCCCATTAG 13954 ||||| || || || ||||||||||||| ||||||||||| | ||||||||||| || Sbjct 14747 GCGCATTGAGGGTATTACCGTAGGCGCGCAGTCGTCCCACTCTGTTGGTAATCCCATCAG 14806 Query 13955 CCAACGGGAATGTGCCGGGTTCAACTGGCCGCCACTTTCCATCCCGGCAGCTGAGCCAGT 14014 ||| |||| |||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 14807 CCAGCGGGCGTGTGCCGGGTTCAACTGGCCGCCATTTTCCATCCCGGCAGCAGAGCCAGT 14866 Query 14015 CAGAATCTCGCCAGTGGCCGTTAGTCGGCCCGGCAGCGTCATTTGTGACCACCCCGGCAG 14074 ||| ||||||||| ||||| |||||| | || |||||||| | |||| || | ||| Sbjct 14867 CAGCCTCTCGCCAGAAGCCGTGAGTCGGACAGGTGGCGTCATTGGCGACCCTCCTGTCAG 14926 Query 14075 GCA 14077 || Sbjct 14927 ACA 14929 >seq10505 Length=1270 Score = 183 bits (202), Expect = 8e-42 Identities = 221/294 (75%), Gaps = 10/294 (3%) Strand=Plus/Minus Query 14317 CCTTCCTGTCGCTGGTGGTTGGCGTCGGCCACCCAGTACAATCGCTGTCGGATGTGCGGC 14376 |||||| ||| | ||||| ||||| ||||||||||||| || | ||||| ||||| Sbjct 289 CCTTCCCGTCCCGCGTGGTCGGCGTAGGCCACCCAGTACGCCCGGTCGCGGATATGCGGG 230 Query 14377 GCACCGACGCCCGCAG-CGCATAAATCTGCCGCTGCGCTGGCGTATCCCGCGTTTTCCAA 14435 |||||||||||||||| || | | | | | || |||||| || || ||||| Sbjct 229 GCACCGACGCCCGCAGACGGAAACGGCACACACC-CGAAGGCGTAGTCCACGGCTTCCAG 171 Query 14436 GTCAGTTTGTACAATGTCGAGCCAACCGAGGCCGTCCT---TGCTTGAAACCTGCTCACC 14492 ||||| ||||||| ||||| ||| |||| | | |||||| |||||| ||||| Sbjct 170 GTCAGCCTGTACAAGGTCGAACCA---GAGGTTTGCATGGCTGCTTGCAACCTGTTCACC 114 Query 14493 AAAGACG-ACGCTAGGGCTGCACTGGCTGATGAGATGGAAGAATGCCGGCCACAGGTGCC 14551 ||| ||| || | ||||| ||||||||||||||| | || || ||||| || |||| Sbjct 113 AAAAACGTACTC-AGGGCGGCACTGGCTGATGAGCCAGTGAAAAGCGGGCCAGAGATGCC 55 Query 14552 GCTCGTCAGCAACCCCTGCGCCTTTGCCTGCCGCGCTGAAAGGCTGGCAAGGGC 14605 |||||||| || ||| |||| |||||||||||||||||||||||||| |||| Sbjct 54 GCTCGTCATAAAACCCGCCGCCCTTGCCTGCCGCGCTGAAAGGCTGGCAGGGGC 1 Score = 165 bits (182), Expect = 2e-36 Identities = 118/136 (87%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13902 GATGGCGTTCCCGTAGGCGCGCAATCGTCCCACTCGGGAGGTAATCCCATTAGCCAACGG 13961 ||| ||||| ||||||||||||| ||||||||| ||| ||||| ||||| ||||| ||| Sbjct 500 GATAGCGTTTCCGTAGGCGCGCAGTCGTCCCACGCGGTTGGTAACCCCATAAGCCAGCGG 441 Query 13962 GAATGTGCCGGGTTCAACTGGCCGCCACTTTCCATCCCGGCAGCTGAGCCAGTCAGAATC 14021 ||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| || Sbjct 440 GAATGCGCCGGGTTCAACTGGCCGCCACTTTTCATCCCGGCACAGGAGCCAGTCAGCCTC 381 Query 14022 TCGCCAGTGGCCGTTA 14037 ||||||| ||||||| Sbjct 380 TCGCCAGAAGCCGTTA 365 >seq2192 Length=16777 Score = 178 bits (196), Expect = 4e-40 Identities = 219/293 (75%), Gaps = 10/293 (3%) Strand=Plus/Plus Query 14317 CCTTCCTGTCGCTGGTGGTTGGCGTCGGCCACCCAGTACAATCGCTGTCGGATGTGCGGC 14376 |||||| ||| | ||||| ||||| ||||||||||||| || | ||||| ||||| Sbjct 16490 CCTTCCCGTCCCGCGTGGTCGGCGTAGGCCACCCAGTACGCCCGGTCGCGGATATGCGGG 16549 Query 14377 GCACCGACGCCCGCAG-CGCATAAATCTGCCGCTGCGCTGGCGTATCCCGCGTTTTCCAA 14435 |||||||||||||||| || | | | | | || |||||| || || ||||| Sbjct 16550 GCACCGACGCCCGCAGACGGAAACGGCACACACC-CGAAGGCGTAGTCCACGGCTTCCAG 16608 Query 14436 GTCAGTTTGTACAATGTCGAGCCAACCGAGGCCGTCCT---TGCTTGAAACCTGCTCACC 14492 ||||| ||||||| ||||| ||| |||| | | |||||| |||||| ||||| Sbjct 16609 GTCAGCCTGTACAAGGTCGAACCA---GAGGTTTGCATGGCTGCTTGCAACCTGTTCACC 16665 Query 14493 AAAGACG-ACGCTAGGGCTGCACTGGCTGATGAGATGGAAGAATGCCGGCCACAGGTGCC 14551 ||| ||| || | ||||| ||||||||||||||| | || || ||||| || |||| Sbjct 16666 AAAAACGTACTC-AGGGCGGCACTGGCTGATGAGCCAGTGAAAAGCGGGCCAGAGATGCC 16724 Query 14552 GCTCGTCAGCAACCCCTGCGCCTTTGCCTGCCGCGCTGAAAGGCTGGCAAGGG 14604 |||||||| || ||| |||| |||||||| ||||||||||||||||| ||| Sbjct 16725 GCTCGTCATAAAACCCGCCGCCCTTGCCTGCTGCGCTGAAAGGCTGGCAGGGG 16777 Score = 165 bits (182), Expect = 2e-36 Identities = 118/136 (87%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13902 GATGGCGTTCCCGTAGGCGCGCAATCGTCCCACTCGGGAGGTAATCCCATTAGCCAACGG 13961 ||| ||||| ||||||||||||| ||||||||| ||| ||||| ||||| ||||| ||| Sbjct 16279 GATAGCGTTTCCGTAGGCGCGCAGTCGTCCCACGCGGTTGGTAACCCCATAAGCCAGCGG 16338 Query 13962 GAATGTGCCGGGTTCAACTGGCCGCCACTTTCCATCCCGGCAGCTGAGCCAGTCAGAATC 14021 ||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| || Sbjct 16339 GAATGCGCCGGGTTCAACTGGCCGCCACTTTTCATCCCGGCACAGGAGCCAGTCAGCCTC 16398 Query 14022 TCGCCAGTGGCCGTTA 14037 ||||||| ||||||| Sbjct 16399 TCGCCAGAAGCCGTTA 16414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137505791738526