Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_023841.1
Length=37328
Score E
Sequences producing significant alignments: (Bits) Value
seq10505 152 1e-32
seq2192 152 1e-32
seq1601 122 2e-23
>seq10505
Length=1270
Score = 152 bits (168), Expect = 1e-32
Identities = 136/169 (80%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 31176 CGGTTAACGGCGTCTGGCGAGATGCTGACTGGCTCTGGTGCCGGGATGAAAAGTGGCGGC 31235
||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 361 CGGTTAACGGCTTCTGGCGAGAGGCTGACTGGCTCCTGTGCCGGGATGAAAAGTGGCGGC 420
Query 31236 CGGTTGAACCCGGCCTTGAGCCGCTGGTTGATGGGGCTCCCGCCCGTGTGGGACGCCTGC 31295
| |||||||||||| ||||||| | |||||| | || ||| |||||||| ||||
Sbjct 421 CAGTTGAACCCGGCGCATTCCCGCTGGCTTATGGGGTTACCAACCGCGTGGGACGACTGC 480
Query 31296 GCGGATACGGCAACGCAATCATTGCCGAGCAGGCGGC---GGCGTTCAT 31341
||| ||||| ||||| |||| || | ||||||| ||||||||
Sbjct 481 GCGCCTACGGAAACGCTATCA---ACGTGGAGGCGGCAAAAGCGTTCAT 526
>seq2192
Length=16777
Score = 152 bits (168), Expect = 1e-32
Identities = 136/169 (80%), Gaps = 6/169 (4%)
Strand=Plus/Minus
Query 31176 CGGTTAACGGCGTCTGGCGAGATGCTGACTGGCTCTGGTGCCGGGATGAAAAGTGGCGGC 31235
||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 16418 CGGTTAACGGCTTCTGGCGAGAGGCTGACTGGCTCCTGTGCCGGGATGAAAAGTGGCGGC 16359
Query 31236 CGGTTGAACCCGGCCTTGAGCCGCTGGTTGATGGGGCTCCCGCCCGTGTGGGACGCCTGC 31295
| |||||||||||| ||||||| | |||||| | || ||| |||||||| ||||
Sbjct 16358 CAGTTGAACCCGGCGCATTCCCGCTGGCTTATGGGGTTACCAACCGCGTGGGACGACTGC 16299
Query 31296 GCGGATACGGCAACGCAATCATTGCCGAGCAGGCGGC---GGCGTTCAT 31341
||| ||||| ||||| |||| || | ||||||| ||||||||
Sbjct 16298 GCGCCTACGGAAACGCTATCA---ACGTGGAGGCGGCAAAAGCGTTCAT 16253
>seq1601
Length=30922
Score = 122 bits (134), Expect = 2e-23
Identities = 103/127 (81%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 31182 ACGGCGTCTGGCGAGATGCTGACTGGCTCTGGTGCCGGGATGAAAAGTGGCGGCCGGTTG 31241
||||| |||||||||| |||||||||||||| |||||||||| ||| |||||||| ||||
Sbjct 14887 ACGGCTTCTGGCGAGAGGCTGACTGGCTCTGCTGCCGGGATGGAAAATGGCGGCCAGTTG 14828
Query 31242 AACCCGGCCTTGAGCCGCTGGTTGATGGGGCTCCCGCCCGTGTGGGACGCCTGCGCGGAT 31301
|||||||| ||||||| ||||||| | || | | |||||||| ||||||| |
Sbjct 14827 AACCCGGCACACGCCCGCTGGCTGATGGGATTACCAACAGAGTGGGACGACTGCGCGCCT 14768
Query 31302 ACGGCAA 31308
|||| ||
Sbjct 14767 ACGGTAA 14761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119304566740260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |