Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq152 100 5e-16 seq57 91.5 3e-13 >seq152 Length=1173123 Score = 100 bits (110), Expect = 5e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 183009 AACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCA 183068 ||| |||||| ||| |||||| | | ||||| ||| || ||| ||||| |||||||| Sbjct 624788 AACGCATGACGATCTGTGGAATTCGGCGCAAATCCAGCTGGTGAAGGAAGGGAAAATGCA 624729 Query 183069 TAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGA 183128 | | |||||||| ||||||||||| || ||||||||||| ||||| | |||||| || Sbjct 624728 TGGATTTTTACGGATGTACTGGGCGAAGAAGATACTTGAGTGGACGTCCAGTCCGGAGGA 624669 Query 183129 TGC 183131 || Sbjct 624668 AGC 624666 >seq57 Length=2082711 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/130 (75%), Gaps = 11/130 (8%) Strand=Plus/Plus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAACA-----------AAG 81701 || ||||| || ||||||||||| ||||||| || ||||| ||| || Sbjct 1618877 TCTTTCTGAATGTTATAATCAGAAAGAGTTCGACCATCTTCCAACTGTTTCCCAGCGAAA 1618936 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 || | ||||| ||| | ||| | ||| ||||||||||||||||||| ||||||| |||| Sbjct 1618937 ATCAACCTTTGCTGATCGGGAGGGATTCCTTCCTTATCTTGAATCTTAGCTTTTACATTT 1618996 Query 81762 TCAATCGTAT 81771 ||||| |||| Sbjct 1618997 TCAATTGTAT 1619006 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/130 (74%), Gaps = 11/130 (8%) Strand=Plus/Plus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC-----------AAAG 81701 |||||||||||||| ||||| ||||| || | || ||||| ||| ||| Sbjct 1621157 TCCTTCTGTATATTGTAATCGGATAGGGTACGACCATCTTCCAACTGCTTTCCAGCAAAA 1621216 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 |||| || ||| ||| | ||| | ||| |||||||||||||||| || || |||| ||| Sbjct 1621217 ATTAATCGTTGCTGATCAGGAGGGATTCCTTCCTTATCTTGAATTTTAGCCTTTACGTTT 1621276 Query 81762 TCAATCGTAT 81771 ||||| |||| Sbjct 1621277 TCAATAGTAT 1621286 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAACA----- 81698 |||||| |||| ||||| ||||||||||| || ||||| | | ||||||||| Sbjct 1620920 AGAGTAGATTCTTTCTGAATATTATAATCTGAAAGAGTGCGGCCATCTTCTAACTGCTTT 1620979 Query 81699 ------AAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| ||||||||| |||| | ||| |||| ||||||||||| || || Sbjct 1620980 CCGGCGAAGATTAATCTTTGTTGGTCTGGCGGAATTCCTTCTTTATCTTGAATTTTAGCC 1621039 Query 81753 TTTATATTTTCAATCGT 81769 || | |||||| || || Sbjct 1621040 TTAACATTTTCGATTGT 1621056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903224453612320