Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq126 122 2e-22 seq133 95.1 3e-14 seq4 86.0 1e-11 >seq126 Length=1333976 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 || |||||||||||||||||||| || || | ||| |||| ||| | || || |||| Sbjct 1319494 GAAGATTCTATTGAAGGTATTTACGACACTTTAAAACAAACGGCTTTGATCTCCAAAACT 1319553 Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACA 110663 |||| ||||| ||| | || || ||| ||| | |||| || || ||| || | Sbjct 1319554 GCTGGTGGAATAGGTGTCCATGTACATTGTATCAGAGCAAAGGGTACATTTATTGCTGGA 1319613 Query 110664 GCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAA 110723 | || |||| ||||| ||| | ||||||||||| ||||| ||||| | || |||||| Sbjct 1319614 ACAAATGGTGTTTCAAACGGATTGGTTCCAATGTTGAGAGTGTTCAATAATACAGCAAAA 1319673 Query 110724 TATGTGAATCAAGGTGGTAA 110743 |||||| | |||||||| || Sbjct 1319674 TATGTGGACCAAGGTGGAAA 1319693 >seq133 Length=1283460 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| |||||| | ||| ||||| | ||||| | || |||||||||| || || | Sbjct 422832 CAAAAATCTGGGAAACCATTAAAAGCTATTAAGGCTCGTCTTAAAGGTAAGGAAGGCAGA 422773 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 ||| |||| ||||| ||||| ||||| ||||| ||| ||| ||| ||| || ||||| Sbjct 422772 ATTAGAGGAAATCTGATGGGTAAACGAGTTGACTTTTCTGCGCGAACTGTCATTACACCA 422713 Query 305066 GATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA--AATTGCTTTAAAACTAA 305123 ||| | | | || | || || | |||||||| | || ||||||| ||| | | Sbjct 422712 GATCCCAATCTCAGGATAGATCAAGTGGGAGTTCC--TCGATCAATTGCTCAAAACATGA 422655 Query 305124 CATTTCCAGAGAAAGTTA 305141 |||||||||| | |||| Sbjct 422654 CATTTCCAGAAATCGTTA 422637 >seq4 Length=5636934 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 36149 ACAGAGACATTCGCTGTCGGAATCAACATGCCTACAAGAACAGTAGTGTTTACTGAACTT 36208 || || ||||||||| | || | || ||||| | |||||||| || |||| | | Sbjct 1885436 ACGGAAACATTCGCTATGGGTGTAAATATGCCGGCGAGAACAGTCGTTTTTAATTCTATA 1885377 Query 36209 GAGAAGTTTGATGGAAAGGAAAAAAGAGTACTTTTACCATCTGAGTATACTCAGATCGCT 36268 | || ||||||||||| || ||| ||||||||||||| || |||| || || ||| Sbjct 1885376 AAAAAATTTGATGGAAATCAATTGAGATTACTTTTACCATCGGAATATATACAAATGGCT 1885317 Query 36269 GGTCGTGCTGGAAGACGAGGAAAAGAT 36295 || | || |||||| |||| |||||| Sbjct 1885316 GGCAGAGCAGGAAGAAGAGGGAAAGAT 1885290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186561337733057