Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq126 122 2e-22
seq133 95.1 3e-14
seq4 86.0 1e-11
>seq126
Length=1333976
Score = 122 bits (134), Expect = 2e-22
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603
|| |||||||||||||||||||| || || | ||| |||| ||| | || || ||||
Sbjct 1319494 GAAGATTCTATTGAAGGTATTTACGACACTTTAAAACAAACGGCTTTGATCTCCAAAACT 1319553
Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACA 110663
|||| ||||| ||| | || || ||| ||| | |||| || || ||| || |
Sbjct 1319554 GCTGGTGGAATAGGTGTCCATGTACATTGTATCAGAGCAAAGGGTACATTTATTGCTGGA 1319613
Query 110664 GCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAA 110723
| || |||| ||||| ||| | ||||||||||| ||||| ||||| | || ||||||
Sbjct 1319614 ACAAATGGTGTTTCAAACGGATTGGTTCCAATGTTGAGAGTGTTCAATAATACAGCAAAA 1319673
Query 110724 TATGTGAATCAAGGTGGTAA 110743
|||||| | |||||||| ||
Sbjct 1319674 TATGTGGACCAAGGTGGAAA 1319693
>seq133
Length=1283460
Score = 95.1 bits (104), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005
|||| |||||| | ||| ||||| | ||||| | || |||||||||| || || |
Sbjct 422832 CAAAAATCTGGGAAACCATTAAAAGCTATTAAGGCTCGTCTTAAAGGTAAGGAAGGCAGA 422773
Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065
||| |||| ||||| ||||| ||||| ||||| ||| ||| ||| ||| || |||||
Sbjct 422772 ATTAGAGGAAATCTGATGGGTAAACGAGTTGACTTTTCTGCGCGAACTGTCATTACACCA 422713
Query 305066 GATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA--AATTGCTTTAAAACTAA 305123
||| | | | || | || || | |||||||| | || ||||||| ||| | |
Sbjct 422712 GATCCCAATCTCAGGATAGATCAAGTGGGAGTTCC--TCGATCAATTGCTCAAAACATGA 422655
Query 305124 CATTTCCAGAGAAAGTTA 305141
|||||||||| | ||||
Sbjct 422654 CATTTCCAGAAATCGTTA 422637
>seq4
Length=5636934
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 36149 ACAGAGACATTCGCTGTCGGAATCAACATGCCTACAAGAACAGTAGTGTTTACTGAACTT 36208
|| || ||||||||| | || | || ||||| | |||||||| || |||| | |
Sbjct 1885436 ACGGAAACATTCGCTATGGGTGTAAATATGCCGGCGAGAACAGTCGTTTTTAATTCTATA 1885377
Query 36209 GAGAAGTTTGATGGAAAGGAAAAAAGAGTACTTTTACCATCTGAGTATACTCAGATCGCT 36268
| || ||||||||||| || ||| ||||||||||||| || |||| || || |||
Sbjct 1885376 AAAAAATTTGATGGAAATCAATTGAGATTACTTTTACCATCGGAATATATACAAATGGCT 1885317
Query 36269 GGTCGTGCTGGAAGACGAGGAAAAGAT 36295
|| | || |||||| |||| ||||||
Sbjct 1885316 GGCAGAGCAGGAAGAAGAGGGAAAGAT 1885290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186561337733057
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |