Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_025414.1
Length=178171
Score E
Sequences producing significant alignments: (Bits) Value
seq2248 140 4e-28
>seq2248
Length=16282
Score = 140 bits (154), Expect = 4e-28
Identities = 294/436 (67%), Gaps = 8/436 (2%)
Strand=Plus/Minus
Query 42333 ATTGCGATTGGGAATGGTTGCGCGACGAAATCAAAAAATATGGCTTGCGTAACTCAACTC 42392
||| |||||||||| |||||||| ||||||| | | || |||||||||| || |
Sbjct 518 ATTACGATTGGGAAGCACTGCGCGACAGTATCAAAACACACGGTCTGCGTAACTCCACGC 459
Query 42393 TTTCCGCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTG 42452
| || || || ||||| | || | || ||| | |||| | || ||||| || |
Sbjct 458 TCTCTGCGTTGATGCCGTCGGAAACCTCGTCACAAATTTCCAACGCCACCAACGGTATCG 399
Query 42453 AACCGCCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGTTCATTCAACCAGGTAG 42512
|||| || ||||||| | ||| | || | || ||||| || || |||||| |
Sbjct 398 AACCACCACGCGGTCACATCAGTATCAAGGCGTCAAAAGACGGCATTTTGCGCCAGGTGG 339
Query 42513 TACCGAACCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCG 42572
| ||| | | || | || ||| ||| || | || ||| |||| | ||
Sbjct 338 TGCCGGATTACAAAACCCTGAAGGATGCCTACGAATTACTGTGGGAAATGCCGAAC---- 283
Query 42573 GTAATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCT 42632
||| | || || ||| | |||| | |||||||||||||| ||||| || || |
Sbjct 282 --AATGACGGCTACCTGCAACTGGTTGGGCTGATGCAGAAGTTTGTCGATCAGGCTATTT 225
Query 42633 CTGCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCA 42692
|||| ||||||||||| |||||||| |||||| || |||||| ||||||
Sbjct 224 CTGCCAACACCAACTACGATCCGGCGCGCTTCCCGTCAGGAAAAGTG-CCGATGAAACAG 166
Query 42693 TCATTGA-TGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACAAC 42751
| ||| |||| ||||| || | | | ||| ||||||| ||||||||||| |||
Sbjct 165 TTGCTGACTGACTTGCTTACCGCCTATAAGTTCGGGTTGAAAACGCTGTATTATCAAAAC 106
Query 42752 ACCCGCGACGGTGCAG 42767
||||| ||||||||||
Sbjct 105 ACCCGTGACGGTGCAG 90
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569901369906120
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |