Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_026014.1
Length=35814
Score E
Sequences producing significant alignments: (Bits) Value
seq8600 271 2e-68
seq13965 268 2e-67
seq2 176 1e-39
seq81 167 5e-37
seq4705 96.9 8e-16
seq5798 84.2 5e-12
>seq8600
Length=1434
Score = 271 bits (300), Expect = 2e-68
Identities = 254/322 (79%), Gaps = 1/322 (0%)
Strand=Plus/Plus
Query 33606 GTTGATGAAATCGCTCACGAAGGACCGCCGGACAGGCTGACTGTTTCAGCCAGAAGCGCA 33665
||||||||| |||| || |||| |||||||| ||| | | | || | ||||||
Sbjct 1108 GTTGATGAAGTCGCCCATGAAGACCCGCCGGATGTGCTCAACATCACGGCACGTAGCGCA 1167
Query 33666 GATTTTCGGGATGAATTTAACGTTAAACGTGAGGTGTCCTGGCATGATGTGACCGTTGAG 33725
|||||||| ||||||||||| || || ||||||||||||||||| |||||||| ||||||
Sbjct 1168 GATTTTCGTGATGAATTTAATGTCAAGCGTGAGGTGTCCTGGCACGATGTGACTGTTGAG 1227
Query 33726 CGTGTGGTATCCGCCATCGCTCATCGGTATGGTCTGAAACCGCAAATCAGCGAAATGCTG 33785
|||||||| || || ||||| || || | || |||||| ||||||||||||| ||||||
Sbjct 1228 CGTGTGGTGTCTGCTATCGCGCACCGTTGCGGGCTGAAAGCGCAAATCAGCGACATGCTG 1287
Query 33786 ATGGATATCGAAATCGACCACGCCGACCAGACCGAAGAAAGCGACATGTCCTTCCTTACG 33845
||| | || || || ||||||||||||||||| |||||||| | ||||| || | ||
Sbjct 1288 ATGAACATTGACATTGACCACGCCGACCAGACACAAGAAAGCAATATGTCGTTTTTAACC 1347
Query 33846 CGCATGGCGGAAATGCTGGGCGCAATCACCACGGTAAAAAGCGGTAATCTGTTATTCATC 33905
|| ||| | |||||||||||||| || ||||||| |||| ||| || | || |||
Sbjct 1348 CGAATGCCAGAAATGCTGGGCGCGATTGCCACGGTTAAAAACGGAGCATTGCTGTTTATC 1407
Query 33906 ATGCCCGGTGGTGGCGTGAACG 33927
||||||||||||| || ||||
Sbjct 1408 CTGCCCGGTGGTGGGGT-AACG 1428
>seq13965
Length=1093
Score = 268 bits (296), Expect = 2e-67
Identities = 371/517 (72%), Gaps = 2/517 (0%)
Strand=Plus/Plus
Query 21150 TTGACCTTTCACAGTTACCGGACCCCGCC-ATCATCGCGGAGCCTGACTTTGAGGCAATT 21208
||||||| || ||| | || | |||| ||||||| | | ||||| ||| | ||
Sbjct 304 TTGACCTGTCGCAGCTGCCAT-CGCCGCAGATCATCGAGCCACTCGACTTCGAGACGATC 362
Query 21209 CTGGCTGACACAAAGGCCATGATGATTGCGGCTTATCCCGCCGAACAGCATGAAGCCGTT 21268
|| | |||| ||||| ||||||| || || | ||| || || ||||| | | | |||
Sbjct 363 CTCGTTGACGTCAAGGCGGTGATGATCGCCGCCTTTCCTGCTGACCAGCAGGCATCGGTT 422
Query 21269 TCCGCCGCGCTGGAGCTGGAATCGGAACCCCTTAACGTTATCGCTCAAACCATGTCGTTT 21328
||||||| ||| |||||| || || || || ||||| ||||| || | ||| | |
Sbjct 423 GCCGCCGCCCTGTCGCTGGAGTCCGAGCCGCTCAACGTGATCGCCCAGGCGATGGCCTAC 482
Query 21329 CGTGAAATGCTGTTACGCCAGCGGGTTAACGAGGGGGCACGCGCCTGCATGTTAAGCCAC 21388
|| ||| ||||||| |||| ||| | ||||||||||| |||||||||| | ||||||
Sbjct 483 CGCGAATTGCTGTTGCGCCGGCGAATCAACGAGGGGGCCGCCGCCTGCATGCTGAGCCAC 542
Query 21389 AGCGCCGGGACAGACCTGGACAACCTCGCGGGCAATATGAACACAAAGCGCCTGGTTATC 21448
|| || || |||||||||||||| || | ||| | |||| |||||||| |||
Sbjct 543 GCCGAAGGCACCGACCTGGACAACCTGGCCGCCAACCTCGACACCGAGCGCCTGACGATC 602
Query 21449 ACTCCGGCAACGGATACCACCGACGCGGTGATGGAGAGCGACACCTCGCTGAGACTGCGG 21508
|| |||| |||||| || |||| ||||||||||| || ||| | ||| | |||||
Sbjct 603 ACCCCGGAAACGGACACGTCCGATGCGGTGATGGAAAGTGACGAAGCCCTGCGCCTGCGC 662
Query 21509 GCGCAGCGGGCGTACGACGGCCTGAGTGTTGCTGGCCCGTCAGGTGCATACGAGTATTTT 21568
||||| |||| ||| ||| |||| || || |||||||| | || || || ||||||
Sbjct 663 GCGCAATCCGCGTTCGAGGGCATGAGCGTGGCCGGCCCGTCGGCGGCGTATGAATATTTT 722
Query 21569 GCCCGCAGCGCCAGCGGTCTGGTGCGTGATGCGCGGGCTATCAGTCCGTCTCCGGCAAAT 21628
|||||||||||||||| ||| || || |||| | ||| ||| | ||||| |
Sbjct 723 ACCCGCAGCGCCAGCGGCAAGGTTGCCGACGCCAGGGCAACCAGCCCGGCACCGGCGGAG 782
Query 21629 GTGACGGTTTCCATTCTGTCCACTGAAGGCGACGGCA 21665
||| | | |||| ||||| || || ||||||||||
Sbjct 783 GTGGTGATCGCCATCCTGTCGACCGACGGCGACGGCA 819
>seq2
Length=8990745
Score = 176 bits (194), Expect = 1e-39
Identities = 189/249 (76%), Gaps = 1/249 (0%)
Strand=Plus/Plus
Query 11382 GCGTAAGGGTTAAAGCGGATCACCTCTTCGCCAAGCCAGTCATTGATGTGCTTCATGGCC 11441
||||| ||||| ||||||||||| || | ||||||||||||| ||||||| ||
Sbjct 6245056 GCGTAGGGGTTGAAGCGGATCACTTCCATACTCAGCCAGTCATTGACATGCTTCAGCGCT 6245115
Query 11442 TCCATGACGGGCATCAGCTCGTTAATTGCGTAAACCCGCGCGGCCTTCTCCACATCACCA 11501
|||||||| |||||||| |||||||| || | ||||| || || ||||| || |||||
Sbjct 6245116 TCCATGACCGGCATCAGTTCGTTAATGGCAAACACCCGTGCCGCTTTCTCAACGTCACCG 6245175
Query 11502 AACGCACTTTTTTCGCCCGGCATCGCCCCCATCAGTTGCGGCGGAACGCGGTGCGCAGCC 11561
|| | | || | ||||||| ||||||||||||||||||| || |||||||| ||
Sbjct 6245176 AATGAGCCGTTGCCCTCCGGCATGGCCCCCATCAGTTGCGGCGACACACGGTGCGCGGCA 6245235
Query 11562 AGCACATCATCACGGGATGCCGCCTTAACATTCATGAACTCATCCTTTGCGGTGATCTG- 11620
|| | ||| ||||||| | | ||| | ||||| ||| |||||||| || | |||||
Sbjct 6245236 AGGATATCGTCACGGGTAACAGACTTGATATTCAGGAATTCATCCTTGGCCGATATCTGA 6245295
Query 11621 CTGGAACGG 11629
||| || ||
Sbjct 6245296 CTGAAAGGG 6245304
>seq81
Length=1823934
Score = 167 bits (184), Expect = 5e-37
Identities = 178/234 (76%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 11382 GCGTAAGGGTTAAAGCGGATCACCTCTTCGCCAAGCCAGTCATTGATGTGCTTCATGGCC 11441
||||| ||||| ||||||||||| || | ||||||||||||| ||||||| ||
Sbjct 1007126 GCGTAGGGGTTGAAGCGGATCACTTCCATACTCAGCCAGTCATTGACATGCTTCAGCGCT 1007185
Query 11442 TCCATGACGGGCATCAGCTCGTTAATTGCGTAAACCCGCGCGGCCTTCTCCACATCACCA 11501
|||||||| |||||||| |||||||| || | ||||| || || ||||| || |||||
Sbjct 1007186 TCCATGACCGGCATCAGTTCGTTAATGGCAAACACCCGTGCCGCTTTCTCAACGTCACCG 1007245
Query 11502 AACGCACTTTTTTCGCCCGGCATCGCCCCCATCAGTTGCGGCGGAACGCGGTGCGCAGCC 11561
|| | | || | ||||||| ||||||||||||||||||| || |||||||| ||
Sbjct 1007246 AATGAGCCGTTGCCCTCCGGCATGGCCCCCATCAGTTGCGGCGACACACGGTGCGCGGCA 1007305
Query 11562 AGCACATCATCACGGGATGCCGCCTTAACATTCATGAACTC-ATCCTTTGCGGT 11614
|| | ||| ||||||| | | ||| | ||||| ||| || | ||||| ||||
Sbjct 1007306 AGGATATCGTCACGGGTAACAGACTTGATATTCAGGAATTCAAACCTTTTCGGT 1007359
>seq4705
Length=4822
Score = 96.9 bits (106), Expect = 8e-16
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 139 GGATTAAAGCGCACAGCATCCTGTAGATAATCCGGTGCAAAATGGGCATAAGTCATCGTC 198
||||||||| | |||||||||| |||||| || |||| ||| || || ||||| ||
Sbjct 1296 GGATTAAAGGTTATCGCATCCTGTAAATAATCAGGAGCAAGATGTGCGTAGGTCATAGTT 1237
Query 199 TGCTGAATAGTGCTATGTCCAAGTATTCTCTGCAAAGTGATGATATTCCCACCATTAATC 258
||||| || | || || | ||| | |||| || | ||||| || || || ||
Sbjct 1236 TGCTGGATTGAAGCGTGGCCCATAATTTTTTGCAGCGTCAGAATATTTCCTCCGTTCATA 1177
Query 259 ATGAAGTGAGTGGCAAAGGTATGCCGTAAAACATGTATCGACTGCCCTTCAGGAAGATCA 318
||||| || | ||||||||||| || | ||||| | ||||| |||| ||| |||||
Sbjct 1176 ATGAAATGTGCAGCAAAGGTATGACGCAGCACATGCACTGACTGTCCTTTAGGTAGATCG 1117
Query 319 GGC 321
|||
Sbjct 1116 GGC 1114
>seq5798
Length=3530
Score = 84.2 bits (92), Expect = 5e-12
Identities = 86/111 (77%), Gaps = 5/111 (5%)
Strand=Plus/Plus
Query 12216 TACCAGTCCACCGGGGTTTCATACCACCGCCCGTTATCAGCACAGTACATATTGTCCAGC 12275
||||| || | ||||||||| || | ||||||||||| || || ||||| |||||||||
Sbjct 583 TACCATTCAATCGGGGTTTCGTAATAACGCCCGTTATCCGCGCAATACATGTTGTCCAGC 642
Query 12276 AGGTCATGCCCGGTCAGGC----GATAAGGCCCATCAAATGTGAATGCACT 12322
||||||| | |||| || ||||||| ||||| || ||||| || ||
Sbjct 643 AGGTCAT-AACTGTCACGCACCGGATAAGGGCCATCGAACGTGAACGCGCT 692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114460718146944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |