Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq8600 271 2e-68 seq13965 268 2e-67 seq2 176 1e-39 seq81 167 5e-37 seq4705 96.9 8e-16 seq5798 84.2 5e-12 >seq8600 Length=1434 Score = 271 bits (300), Expect = 2e-68 Identities = 254/322 (79%), Gaps = 1/322 (0%) Strand=Plus/Plus Query 33606 GTTGATGAAATCGCTCACGAAGGACCGCCGGACAGGCTGACTGTTTCAGCCAGAAGCGCA 33665 ||||||||| |||| || |||| |||||||| ||| | | | || | |||||| Sbjct 1108 GTTGATGAAGTCGCCCATGAAGACCCGCCGGATGTGCTCAACATCACGGCACGTAGCGCA 1167 Query 33666 GATTTTCGGGATGAATTTAACGTTAAACGTGAGGTGTCCTGGCATGATGTGACCGTTGAG 33725 |||||||| ||||||||||| || || ||||||||||||||||| |||||||| |||||| Sbjct 1168 GATTTTCGTGATGAATTTAATGTCAAGCGTGAGGTGTCCTGGCACGATGTGACTGTTGAG 1227 Query 33726 CGTGTGGTATCCGCCATCGCTCATCGGTATGGTCTGAAACCGCAAATCAGCGAAATGCTG 33785 |||||||| || || ||||| || || | || |||||| ||||||||||||| |||||| Sbjct 1228 CGTGTGGTGTCTGCTATCGCGCACCGTTGCGGGCTGAAAGCGCAAATCAGCGACATGCTG 1287 Query 33786 ATGGATATCGAAATCGACCACGCCGACCAGACCGAAGAAAGCGACATGTCCTTCCTTACG 33845 ||| | || || || ||||||||||||||||| |||||||| | ||||| || | || Sbjct 1288 ATGAACATTGACATTGACCACGCCGACCAGACACAAGAAAGCAATATGTCGTTTTTAACC 1347 Query 33846 CGCATGGCGGAAATGCTGGGCGCAATCACCACGGTAAAAAGCGGTAATCTGTTATTCATC 33905 || ||| | |||||||||||||| || ||||||| |||| ||| || | || ||| Sbjct 1348 CGAATGCCAGAAATGCTGGGCGCGATTGCCACGGTTAAAAACGGAGCATTGCTGTTTATC 1407 Query 33906 ATGCCCGGTGGTGGCGTGAACG 33927 ||||||||||||| || |||| Sbjct 1408 CTGCCCGGTGGTGGGGT-AACG 1428 >seq13965 Length=1093 Score = 268 bits (296), Expect = 2e-67 Identities = 371/517 (72%), Gaps = 2/517 (0%) Strand=Plus/Plus Query 21150 TTGACCTTTCACAGTTACCGGACCCCGCC-ATCATCGCGGAGCCTGACTTTGAGGCAATT 21208 ||||||| || ||| | || | |||| ||||||| | | ||||| ||| | || Sbjct 304 TTGACCTGTCGCAGCTGCCAT-CGCCGCAGATCATCGAGCCACTCGACTTCGAGACGATC 362 Query 21209 CTGGCTGACACAAAGGCCATGATGATTGCGGCTTATCCCGCCGAACAGCATGAAGCCGTT 21268 || | |||| ||||| ||||||| || || | ||| || || ||||| | | | ||| Sbjct 363 CTCGTTGACGTCAAGGCGGTGATGATCGCCGCCTTTCCTGCTGACCAGCAGGCATCGGTT 422 Query 21269 TCCGCCGCGCTGGAGCTGGAATCGGAACCCCTTAACGTTATCGCTCAAACCATGTCGTTT 21328 ||||||| ||| |||||| || || || || ||||| ||||| || | ||| | | Sbjct 423 GCCGCCGCCCTGTCGCTGGAGTCCGAGCCGCTCAACGTGATCGCCCAGGCGATGGCCTAC 482 Query 21329 CGTGAAATGCTGTTACGCCAGCGGGTTAACGAGGGGGCACGCGCCTGCATGTTAAGCCAC 21388 || ||| ||||||| |||| ||| | ||||||||||| |||||||||| | |||||| Sbjct 483 CGCGAATTGCTGTTGCGCCGGCGAATCAACGAGGGGGCCGCCGCCTGCATGCTGAGCCAC 542 Query 21389 AGCGCCGGGACAGACCTGGACAACCTCGCGGGCAATATGAACACAAAGCGCCTGGTTATC 21448 || || || |||||||||||||| || | ||| | |||| |||||||| ||| Sbjct 543 GCCGAAGGCACCGACCTGGACAACCTGGCCGCCAACCTCGACACCGAGCGCCTGACGATC 602 Query 21449 ACTCCGGCAACGGATACCACCGACGCGGTGATGGAGAGCGACACCTCGCTGAGACTGCGG 21508 || |||| |||||| || |||| ||||||||||| || ||| | ||| | ||||| Sbjct 603 ACCCCGGAAACGGACACGTCCGATGCGGTGATGGAAAGTGACGAAGCCCTGCGCCTGCGC 662 Query 21509 GCGCAGCGGGCGTACGACGGCCTGAGTGTTGCTGGCCCGTCAGGTGCATACGAGTATTTT 21568 ||||| |||| ||| ||| |||| || || |||||||| | || || || |||||| Sbjct 663 GCGCAATCCGCGTTCGAGGGCATGAGCGTGGCCGGCCCGTCGGCGGCGTATGAATATTTT 722 Query 21569 GCCCGCAGCGCCAGCGGTCTGGTGCGTGATGCGCGGGCTATCAGTCCGTCTCCGGCAAAT 21628 |||||||||||||||| ||| || || |||| | ||| ||| | ||||| | Sbjct 723 ACCCGCAGCGCCAGCGGCAAGGTTGCCGACGCCAGGGCAACCAGCCCGGCACCGGCGGAG 782 Query 21629 GTGACGGTTTCCATTCTGTCCACTGAAGGCGACGGCA 21665 ||| | | |||| ||||| || || |||||||||| Sbjct 783 GTGGTGATCGCCATCCTGTCGACCGACGGCGACGGCA 819 >seq2 Length=8990745 Score = 176 bits (194), Expect = 1e-39 Identities = 189/249 (76%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 11382 GCGTAAGGGTTAAAGCGGATCACCTCTTCGCCAAGCCAGTCATTGATGTGCTTCATGGCC 11441 ||||| ||||| ||||||||||| || | ||||||||||||| ||||||| || Sbjct 6245056 GCGTAGGGGTTGAAGCGGATCACTTCCATACTCAGCCAGTCATTGACATGCTTCAGCGCT 6245115 Query 11442 TCCATGACGGGCATCAGCTCGTTAATTGCGTAAACCCGCGCGGCCTTCTCCACATCACCA 11501 |||||||| |||||||| |||||||| || | ||||| || || ||||| || ||||| Sbjct 6245116 TCCATGACCGGCATCAGTTCGTTAATGGCAAACACCCGTGCCGCTTTCTCAACGTCACCG 6245175 Query 11502 AACGCACTTTTTTCGCCCGGCATCGCCCCCATCAGTTGCGGCGGAACGCGGTGCGCAGCC 11561 || | | || | ||||||| ||||||||||||||||||| || |||||||| || Sbjct 6245176 AATGAGCCGTTGCCCTCCGGCATGGCCCCCATCAGTTGCGGCGACACACGGTGCGCGGCA 6245235 Query 11562 AGCACATCATCACGGGATGCCGCCTTAACATTCATGAACTCATCCTTTGCGGTGATCTG- 11620 || | ||| ||||||| | | ||| | ||||| ||| |||||||| || | ||||| Sbjct 6245236 AGGATATCGTCACGGGTAACAGACTTGATATTCAGGAATTCATCCTTGGCCGATATCTGA 6245295 Query 11621 CTGGAACGG 11629 ||| || || Sbjct 6245296 CTGAAAGGG 6245304 >seq81 Length=1823934 Score = 167 bits (184), Expect = 5e-37 Identities = 178/234 (76%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 11382 GCGTAAGGGTTAAAGCGGATCACCTCTTCGCCAAGCCAGTCATTGATGTGCTTCATGGCC 11441 ||||| ||||| ||||||||||| || | ||||||||||||| ||||||| || Sbjct 1007126 GCGTAGGGGTTGAAGCGGATCACTTCCATACTCAGCCAGTCATTGACATGCTTCAGCGCT 1007185 Query 11442 TCCATGACGGGCATCAGCTCGTTAATTGCGTAAACCCGCGCGGCCTTCTCCACATCACCA 11501 |||||||| |||||||| |||||||| || | ||||| || || ||||| || ||||| Sbjct 1007186 TCCATGACCGGCATCAGTTCGTTAATGGCAAACACCCGTGCCGCTTTCTCAACGTCACCG 1007245 Query 11502 AACGCACTTTTTTCGCCCGGCATCGCCCCCATCAGTTGCGGCGGAACGCGGTGCGCAGCC 11561 || | | || | ||||||| ||||||||||||||||||| || |||||||| || Sbjct 1007246 AATGAGCCGTTGCCCTCCGGCATGGCCCCCATCAGTTGCGGCGACACACGGTGCGCGGCA 1007305 Query 11562 AGCACATCATCACGGGATGCCGCCTTAACATTCATGAACTC-ATCCTTTGCGGT 11614 || | ||| ||||||| | | ||| | ||||| ||| || | ||||| |||| Sbjct 1007306 AGGATATCGTCACGGGTAACAGACTTGATATTCAGGAATTCAAACCTTTTCGGT 1007359 >seq4705 Length=4822 Score = 96.9 bits (106), Expect = 8e-16 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 139 GGATTAAAGCGCACAGCATCCTGTAGATAATCCGGTGCAAAATGGGCATAAGTCATCGTC 198 ||||||||| | |||||||||| |||||| || |||| ||| || || ||||| || Sbjct 1296 GGATTAAAGGTTATCGCATCCTGTAAATAATCAGGAGCAAGATGTGCGTAGGTCATAGTT 1237 Query 199 TGCTGAATAGTGCTATGTCCAAGTATTCTCTGCAAAGTGATGATATTCCCACCATTAATC 258 ||||| || | || || | ||| | |||| || | ||||| || || || || Sbjct 1236 TGCTGGATTGAAGCGTGGCCCATAATTTTTTGCAGCGTCAGAATATTTCCTCCGTTCATA 1177 Query 259 ATGAAGTGAGTGGCAAAGGTATGCCGTAAAACATGTATCGACTGCCCTTCAGGAAGATCA 318 ||||| || | ||||||||||| || | ||||| | ||||| |||| ||| ||||| Sbjct 1176 ATGAAATGTGCAGCAAAGGTATGACGCAGCACATGCACTGACTGTCCTTTAGGTAGATCG 1117 Query 319 GGC 321 ||| Sbjct 1116 GGC 1114 >seq5798 Length=3530 Score = 84.2 bits (92), Expect = 5e-12 Identities = 86/111 (77%), Gaps = 5/111 (5%) Strand=Plus/Plus Query 12216 TACCAGTCCACCGGGGTTTCATACCACCGCCCGTTATCAGCACAGTACATATTGTCCAGC 12275 ||||| || | ||||||||| || | ||||||||||| || || ||||| ||||||||| Sbjct 583 TACCATTCAATCGGGGTTTCGTAATAACGCCCGTTATCCGCGCAATACATGTTGTCCAGC 642 Query 12276 AGGTCATGCCCGGTCAGGC----GATAAGGCCCATCAAATGTGAATGCACT 12322 ||||||| | |||| || ||||||| ||||| || ||||| || || Sbjct 643 AGGTCAT-AACTGTCACGCACCGGATAAGGGCCATCGAACGTGAACGCGCT 692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114460718146944