Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq33 149 9e-31 seq126 120 4e-22 >seq33 Length=2490231 Score = 149 bits (164), Expect = 9e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 || ||| |||||||| | | ||| ||||| || || || | ||||| || || || || Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAA 40002 || ||||||||||||||||||||||| | ||| || ||| || ||| || || | || Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569 Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 |||||||| || ||||||||| || ||||| || ||||||||||| |||||||| Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509 Query 40063 TTTTTCATCGGGTGTCAATTTATTCCA 40089 |||||| || ||| |||| || |||| Sbjct 181508 TTTTTCTTCAGGTTTCAACCTAGTCCA 181482 Score = 111 bits (122), Expect = 2e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 ||||| | ||| ||||||||| | |||||||| ||||| ||||| ||||||||||| | | Sbjct 181293 TTTGAAAGATCAACTTCTTCAACCGTCCAAAAAGACGCTTCTGCTTTTTTGTACATTTGC 181234 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 ||||||||| | |||| |||||||| || |||||||| || || |||| Sbjct 181233 CATATATCATGGTATTCAATTGGAAATATCACAAATCTTTTGGGGTTTT 181185 Score = 104 bits (114), Expect = 3e-17 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||||||| ||| ||||| || || || || || ||||||| || | || || Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCTTT 182589 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | ||||||||| || ||||| ||||| || || | |||||| || || ||||| ||| Sbjct 182588 AACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAGCA 182529 Query 39761 ACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCT 39817 | || ||| ||| | || | | | ||| ||||| | | ||||| |||||| Sbjct 182528 ATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCAGCT 182469 Query 39818 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 || ||||| |||||| || || || || |||||||||||||||| Sbjct 182468 TTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATAAT 182423 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508 ||||| |||||||| ||||| || |||||| | || ||||||||||| || | || Sbjct 182929 CTATCAGCAACAAACTCTATATACTGTTTCATTAGCTCGCAATTCATTCCAATCATTTCT 182870 Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGAT 39568 ||||| | || || || ||||| || || || || | || || ||| ||||| || Sbjct 182869 ACTGGCAAGGCTTCTGTGAGAAATTCCTTCTCAATAACCACTGCATCTTCAATTATTGAG 182810 Query 39569 GTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCA 39628 || | | ||| | ||||| || | | |||||| ||||| | |||||| || ||| Sbjct 182809 GTGATTCTCTCTTTGGTCGGTTTTTGAACAAGATGTTTGAACATAAGGCAGGCAAAATCA 182750 Query 39629 CAATGTAGGCCCT 39641 |||||||| |||| Sbjct 182749 CAATGTAGACCCT 182737 >seq126 Length=1333976 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||||||||||||||| |||| ||| |||| |||| || || ||||| | || Sbjct 1329714 TCCACCCGTAGAAATGCATAGAAGTTAATTTTCCATAATTTGGTTCAGCAATATGTACAT 1329773 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | ||||| ||||||||| || |||||||||||||| |||||||||| ||| | | Sbjct 1329774 TTAAGGATTGTGATTGATCGATAAATGCTCCTCTATCTGCTGCCATTTTTAATATAGTTT 1329833 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | ||||||||| | || || |||| ||| | |||||| |||| Sbjct 1329834 TCTGTGAAATTTCCCACACTGTTTTGTAAATAGCTTTTAAATCATCCGGAA 1329884 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||||||| ||||| || || ||||||||||| || || || ||||| ||||| | | Sbjct 1317146 CACTAAATGTCTTTTTGGTCTCTTTGTGTAAATTAGAAATTGCAATTCTAGCTGCCAATA 1317087 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||| | || ||||||| ||||| ||||| || | ||||||||||| |||| | Sbjct 1317086 TAGCAAAATCCGGATGTTTGGTAGTCATTGTAGCAGCAGTCTCCGCAGCTAAATTATCCA 1317027 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 70505 |||| | ||||| ||||| ||||| || || |||||||| | ||| Sbjct 1317026 ATTCCACGGTTGTGACTCCAGGGTATAGTCCACTTATTACTTTCATAGTTAT 1316975 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 69519 GAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCA 69578 ||| || || ||||||||||| | || || || | ||| |||||||||||| ||||| Sbjct 1321521 GAACTCCTCGCCCCAAACATCTGCTAAGCCTGGCGACACATGTGGACACATCAACGACCA 1321462 Query 69579 CACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGA 69637 ||| ||| || |||||||| |||||| ||||| |||||||| | || ||| || | Sbjct 1321461 TACACCATTTGACTCAACTCGTTCCATAAAAAGATCAGGAATCCATAATGC-ATAGAAAA 1321403 Query 69638 GATCTCTGGTTCT 69650 ||||||| | ||| Sbjct 1321402 GATCTCTAGCTCT 1321390 Score = 86.0 bits (94), Expect = 9e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 68932 CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCA 68991 || ||||| || ||| || | ||| | ||||||| ||| | || || |||||| Sbjct 1332391 CCTTTACTAGCCGGTGAACCTTCATAAGAATCATAAGTTCCATGTATTTGTGCAAGTTCA 1332450 Query 68992 CAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 69051 || || || ||||| || || ||||| ||||||||||| |||| || || | ||||| Sbjct 1332451 CAGCTAGCTTCTAAAGCTCCATAATATATTGTTTCGAAGATCTGTTTGTTCAACTCTTGA 1332510 Query 69052 GCTTCTAGACTATCGAATGG-ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAAC 69110 || | ||| || ||||| || | | | ||||| ||| |||| ||| || || Sbjct 1332511 GCGCGTTCACTTTCAAATGGTATCCT-CATCTGGATAAAAAGATCAGCCAGTCCTTGTAC 1332569 Query 69111 CCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146 ||||||||||| ||||| || | ||||||| || Sbjct 1332570 ACCAATACCGATCGGTCTGTGCAACATATTTGATCT 1332605 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 ||||| || | ||||| ||||| || ||||| | ||| || | ||||||||| || Sbjct 1318391 GCATTGAACATCGTAGGTGATGCATGCGTGAAGTAACCTTCCGACATCAGATTGTAAGTC 1318332 Query 70057 TCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 || || |||| || ||||| | | | ||||| || | || || | |||||||||||| Sbjct 1318331 TCTATGGCTGCGTCAATATCATCGCCG-TGAATACCCACAGCAACCCTCATCAACATATG 1318273 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 |||||| ||||| || ||||| || ||||| || | ||||| ||||| Sbjct 1318272 CTGAGGGCGTTCCACTACTTTATCATGGATTTTTAATAAATATGAACGTTCCA 1318220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686766807364680