Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq9916 358 2e-94 seq11894 210 5e-50 seq3708 120 7e-23 seq1653 107 5e-19 seq4809 100 7e-17 seq5862 93.3 1e-14 >seq9916 Length=1312 Score = 358 bits (396), Expect = 2e-94 Identities = 741/1094 (68%), Gaps = 14/1094 (1%) Strand=Plus/Minus Query 28461 TGGCGATAGTGGGTATCATGTAGCCGCTTATGCTGGAAAGAAGCAATAACCCGCAGAAAA 28520 |||| | || || | |||||||||| || || || | | || ||| | ||| ||| Sbjct 1312 TGGCAACCGTTGGCAGCATGTAGCCGTCGATACTTGAGATCAA-AAGAACGC-CAGCAAA 1255 Query 28521 ACAAAGCTC--CAAGCTCAACAAAACTAAGGGCATAGACAATAACTACCGATGTCATATA 28578 ||||| | |||||||||||||||| || ||||| || || ||||| || ||||| || Sbjct 1254 GAAAAGCACACCAAGCTCAACAAAACTTAGTGCATACACGATGACTACAGAGGTCATGTA 1195 Query 28579 CCCATACTCTCTAATCTTGGCCAGTCGGCGCGTTCTGCTTCCGATTAGAAACGTCAAGGC 28638 || || |||| |||||| | | ||||||||||| || | |||||||| | Sbjct 1194 TCCGTATTCTCGAATCTTACTTAACTTTCTGGTTCTGCTTCCTATCATAAACGTCATTCC 1135 Query 28639 AGCAATCAGGATTGCAATCATGGTTCCTGCATATGATGACAATGTCGCCCCAAGACCATC 28698 || ||||||||||| ||||| ||||||||||| |||||||||| || ||||| ||||| Sbjct 1134 TGCGATCAGGATTGCTATCATTGTTCCTGCATAAGATGACAATGCGGCACCAAGTCCATC 1075 Query 28699 TCTATGAGCTGAAAAAGAAACACCAGGAATGTAGTGGCGGAAAAGGAGATAGCAAATGCT 28758 | |||| | |||||||| || || || | || || || |||| | ||| || | Sbjct 1074 TTTATGGGAAGAAAAAGACACGCCTGGCAGATAATGACGAAAAATAAAATATGAAGTAAA 1015 Query 28759 TACGATAACGTAAGGAATTATTACTATGTAAACACCAGGCATGATTCTGTTCCGCATAAT 28818 || | | |||||| || ||| ||| ||| || ||||| ||| |||| ||||||| Sbjct 1014 AACAAAGAGGTAAGGGATGGCTACAATGCAAATCCCGGGCATTATTTTGTTACGCATAAC 955 Query 28819 TACTCCTGATAATTAATCCT------TAACTTTGCCCACCTGCCTTTTAAAACATTCCAG 28872 |||| | ||| | || | | |||| | || | ||||| || | Sbjct 954 ACCTCCAGCGGATTTGTACTAGCGTGATAGTGTGCCTATTTGGCGATTAAAGCAGCTTAC 895 Query 28873 TATATCACTTTTCATTCTTGCGTAGCAATATGCCATCTCTTCAGCTATCTCAGCATTGGT 28932 |||| ||||||||||| | ||||||| ||| || ||||| || || ||||| || Sbjct 894 TATAGAGGATTTCATTCTTGTGAAGCAATAACTCATTTCCTCAGCAATTTCGGCATTTGT 835 Query 28933 GACCTTGTTTAGAGGCGCTGAGAGATGGCCTTTTTCTGATAGATAATGTTCTGTTAAAAT 28992 | |||| | | ||||| ||||| || ||||||||||||||||| |||| | || Sbjct 834 GGCCTTTTCAATGATTGCTGAAAGATGACCCTTTTCTGATAGATAATGCTCTGAAAGGAT 775 Query 28993 ATCTCCGGCCTCATCTTTTGCCCGCAGGCTAATGTCTGAAAATTGAGGTGACGGGTTAAA 29052 ||| || ||||| ||| | || | || |||||| || || | |||| || || Sbjct 774 ATCACCAGCCTCTTCTCTAGCTCTCATGCTAATTTCAGAGTAAGGAGGATTTGGATTGTT 715 Query 29053 AATAATATC-CTTGGCAACCTTTTTTATATCCCTTTTAAATTTTGGCTTAATGACTATAT 29111 | ||| || |||| | | ||| ||||||||| | ||||| || || | | | Sbjct 714 TACAATGTCTCTTGTC-GCTGATTTGATATCCCTTCTGTGCTTTGGTTTGATTATCACCT 656 Query 29112 CCAATGAGTCAAAAAGCTCCCCTTCAATATCTGTTGCCCCTAAGACCTTTAATATATCGC 29171 | | || ||||| ||||| ||||||| || | |||||||| | | | ||||||| Sbjct 655 CAATGGAATCAAATAGCTCATCTTCAATGTCCTTGGCCCCTAACGCTCTCATTATATCGA 596 Query 29172 CAAATACAGGTAGCTTGGCTTCTACCTTCACCGTTGTTCGGCCGATGAAATGCATATGCA 29231 |||||| | || | |||| || || || |||| ||| ||||| ||| || Sbjct 595 CAAATATCGTGGTGTTAGACTCTATTTTGACTGTGGTTCTGCCTATGAAGCTCATTGTCA 536 Query 29232 TAACATCGTCTTTGGTGGTTCCCCTCATCAGTGGCTCTATCTGAACGCGCTCTCCACTGC 29291 ||||||| | || || || | |||||||||| |||| || || |||| | Sbjct 535 TAACATCTTTCTTTGTTGTGCTTTTCATCAGTGGTTCTAGTTGCACCTTGGATCCA-TCT 477 Query 29292 TTAATGACATTCCTTTCCCGAT-TAAAAAATCTGTCAGATCGGATGTGGTCGGCCCGAAA 29350 | || || | ||| | || |||||||||| | | ||| | || ||||| || || Sbjct 476 TCGATAGCAATATTTTTACCATGTAAAAAATCTATTAAATCAGTGGTAGTCGGTCCATAA 417 Query 29351 ACAGTTCTGGCAAAACCAATGGTGTCGCCTTCAACAAACAAAAAAGATGGGAATCCCAAT 29410 || || || ||||| || || || | || || || | || | || || || | Sbjct 416 ACTGTCCTTGCAAATCCGATAACATCTTCGTCTACGAAAACGAATGCGGGAAAGCCAAGA 357 Query 29411 GATTCGTCATCTGCGAGGCTGTTCTTAATATCTTCAACTGAAGCTTTAGAGCGATTTATC 29470 ||||| ||||| |||||||| || |||||||| || | ||||| | || | ||||| Sbjct 356 GATTCATCATCCGCGAGGCTTTTTTTAATATCCTCTATGGAAGCGCTTGACCTGTTTATT 297 Query 29471 TTCTGAACCAGACTCTTGTCATTTGTTTTGGTAAAGAGAAAAGTTTTTCCATCGATTTTA 29530 || || | ||||| ||||| |||||||| ||||| ||||| ||||| ||| || ||| Sbjct 296 TTTTGTATAAGACTGTTGTCGTTTGTTTTTGTAAAAAGAAATGTTTTATTATCAATGTTA 237 Query 29531 TGAATATACAAATA 29544 |||| ||| | ||| Sbjct 236 TGAAGATAAAGATA 223 >seq11894 Length=1188 Score = 210 bits (232), Expect = 5e-50 Identities = 304/424 (72%), Gaps = 5/424 (1%) Strand=Plus/Plus Query 28397 GTCAAATTATATAGTTGGAAAACAAGGATGCATATATGAATGAACGATGCAGAGGCAATG 28456 || || ||||| || || | ||||| |||||||||||| || || |||| || || Sbjct 627 GTAAAGTTATAAAGCTGAATTACAAGCATGCATATATGAGCAAATGAGGCAGCAGCTATC 686 Query 28457 CCGATGGCGATAGTGGGTATCATGTAGCCGCTTATGCTGGAAAGAAGCAATAACCCGCAG 28516 |||||||| | || || | |||||||||| || || || | | || ||| | ||| Sbjct 687 CCGATGGCAACCGTTGGCAGCATGTAGCCGTCGATACTTGAGATCAA-AAGAACGC-CAG 744 Query 28517 AAAAACAAAGCTC--CAAGCTCAACAAAACTAAGGGCATAGACAATAACTACCGATGTCA 28574 ||| ||||| | |||||||||||||||| || ||||| || || ||||| || |||| Sbjct 745 CAAAGAAAAGCACACCAAGCTCAACAAAACTTAGTGCATACACGATGACTACAGAGGTCA 804 Query 28575 TATACCCATACTCTCTAATCTTGGCCAGTCGGCGCGTTCTGCTTCCGATTAGAAACGTCA 28634 | || || || |||| |||||| | | ||||||||||| || | |||||||| Sbjct 805 TGTATCCGTATTCTCGAATCTTACTTAACTTTCTGGTTCTGCTTCCTATCATAAACGTCA 864 Query 28635 AGGCAGCAATCAGGATTGCAATCATGGTTCCTGCATATGATGACAATGTCGCCCCAAGAC 28694 | || ||||||||||| ||||| ||||||||||| |||||||||| || ||||| | Sbjct 865 TTCCTGCGATCAGGATTGCTATCATTGTTCCTGCATAAGATGACAATGCGGCACCAAGTC 924 Query 28695 CATCTCTATGAGCTGAAAAAGAAACACCAGGAATGTAGTGGCGGAAAAGGAGATAGCAAA 28754 ||||| |||| | |||||||| || || || | || || || |||| | ||| || Sbjct 925 CATCTTTATGGGAAGAAAAAGACACGCCTGGCAGATAATGACGAAAAATAAAATATGAAG 984 Query 28755 TGCTTACGATAACGTAAGGAATTATTACTATGTAAACACCAGGCATGAT-TCTGTTCCGC 28813 | || | | |||||| || ||| ||| ||| || ||||| || | |||| ||| Sbjct 985 TAAAAACAAAGAGGTAAGGGATGGCTACAATGCAAATCCCGGGCATTATATTTGTTACGC 1044 Query 28814 ATAA 28817 |||| Sbjct 1045 ATAA 1048 >seq3708 Length=7132 Score = 120 bits (132), Expect = 7e-23 Identities = 238/351 (68%), Gaps = 1/351 (0%) Strand=Plus/Minus Query 13822 GGGGAAAACATCCTTTCCTGTGATACGGAGAAGAGTATCCGGGAGCGGTTTTCTGTTTAC 13881 || ||||| || || ||||||||||||| |||||||||| || || ||||| | || Sbjct 2404 GGAGAAAATATTCTCACCTGTGATACGGAACAGAGTATCCGCGAACGCTTTTCGGAATAT 2345 Query 13882 CAGGTGGCGGGGCAGCGTGCCGGAAACGACGATGATTTCGGTGAGGCCACCACCACCGCG 13941 ||||||||||| || || | ||| | || | |||| |||||| ||||| || || Sbjct 2344 CAGGTGGCGGGTCAACGCTCGGGAGATGATGCTGATCACGGTGAAGCCACGCTAACGGCA 2285 Query 13942 CTGCGGGCCCGCACAGAGGACGCATTTATTGCCCGTTACCGTCCGATGTATATCAGGCAG 14001 ||||| ||| | | | ||| ||| | || || || ||| ||||| ||| Sbjct 2284 CTGCGAGCCAGAGCCAAAGACAGCCAGATTACGCGCTATCGCCCGCAACATATCCACCAG 2225 Query 14002 ACAGGGCAGGCTACGGGGGCAGGCTGTATTGCCCGTGCGGACTTTGAAGCCAGACAACGG 14061 | || | | || || || ||||| || || || |||||||||||||| | Sbjct 2224 GCCGGTAATACAACCGGAGCCAGCTGTCGCGCTCGCAGTGAATTTGAAGCCAGACAGTGT 2165 Query 14062 GCGGCGCGGACGGATGAAACCACCTACGTGGTGCAGGGCTGGCGACAGGGTAACGGTACG 14121 || || | || || ||||| ||||| || || || | ||| || ||| |||| | Sbjct 2164 GCAGCCAGAACCGAGGAAACGACCTATACAGTACAAGGTTAGCGGCAAGGTGACGGCAGC 2105 Query 14122 CTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCCGGT-CTGTGGTTT 14171 || ||| ||| || || || || ||||| ||||||||||| ||| | ||| Sbjct 2104 CTCTGGAAGCATAATCAACGCGTCATTGTGTTTGATCCGGTGCTGGGCTTT 2054 >seq1653 Length=29478 Score = 107 bits (118), Expect = 5e-19 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 21360 GTCTATTTGCCGTGCGTGTTCGGTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAAC 21419 ||| |||| | || |||||||| | |||| |||| | ||||| || || | || Sbjct 556 GTCAATTTTTCTGGCATGTTCGGTTAAGTGAACCGGTGATAAATGAGCGTAACGTTGTAC 497 Query 21420 CATTTCGATAGACTCCCAGCCTCCCATTTCCTGTAACACTGACAATGGGACTCCGGCTTG 21479 ||| |||||| ||||||||| |||||||| || || | |||| || || || | || Sbjct 496 CATCTCGATACTCTCCCAGCCCCCCATTTCTTGCAATGCAGACAGGGGCACGCCTGACTG 437 Query 21480 AACCAGCCAACTTGCCCAGGTGTGTCTCAAGTCGTGAAATCTGAAATCA 21528 ||| | ||||||||||||||| |||| || || ||||||||||| ||| Sbjct 436 AACTAACCAACTTGCCCAGGTATGTCGCAGATCATGAAATCTGAAGTCA 388 >seq4809 Length=3389 Score = 100 bits (110), Expect = 7e-17 Identities = 243/363 (67%), Gaps = 10/363 (3%) Strand=Plus/Plus Query 33644 TCAAATCAAATACGCCAGCACACGACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTG 33703 |||||||| | || | || | |||||||| |||| ||| |||| | | ||| Sbjct 71 TCAAATCACACACCAGACCAGAGCACAAGGACACATGGCGAACCCCGCCCGAGGTCTTTC 130 Query 33704 ATGCACTGGATATTGAGTTTGGATTCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTC 33763 | || |||||| |||||||| |||| || ||| | || ||| | || | ||| | | Sbjct 131 AGGCGCTGGATGCGGAGTTTGGCTTCTACCTCGATGCCGCCGCGGACCACGACAATACCC 190 Query 33764 TGTGCGCTCACTGGTTAACTGAGGCC----GACGACGCGCTAAATTCTGAGTGGATAAGC 33819 |||| || || || |||| ||| || || || || | ||| |||| ||| Sbjct 191 TGTGTCGTC--TG--TATCTGACGCCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGC 246 Query 33820 CACGGTGCAATCTGGAATAACCCACCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCC 33879 ||| || |||| || || ||||||||||||||| | || ||||| || ||||| Sbjct 247 ACCGGCGCCATCTTCTGCAATCCCCCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCT 306 Query 33880 GCTGAGCAGTGCATACAACAGCGACAGACGGTAGTGATGCTTGTGCCAGAGGATATGTCT 33939 ||||||||| || | ||| | ||||| || ||||| |||| | ||||| || Sbjct 307 GCTGAGCAGAGCCGCAAGCAGAATAAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCG 366 Query 33940 GTCGGATGGTTCAGCA-AGGCTCTGGAGAGTATTGACGAAGTTCGCATCATCACTGATGG 33998 ||||||||| ||| ||||| | | | |||| || || ||| ||||||| || || Sbjct 367 ACGGGATGGTTC-GCACTGGCTCAGAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGG 425 Query 33999 ACG 34001 || Sbjct 426 GCG 428 >seq5862 Length=3465 Score = 93.3 bits (102), Expect = 1e-14 Identities = 227/339 (67%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 33668 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 33727 |||||||| |||| ||| |||| | | || | || |||||| |||||||| | Sbjct 23 ACAAGGACACATGGCGAACCCCGCACGAGGTCTTCCAGGCGCTGGATGCGGAGTTTGGCT 82 Query 33728 TCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTCTGTGCGCTCACTGGTTAACTGAGG 33787 ||| || ||| | || ||| | || | ||| | ||||| || || || |||| | Sbjct 83 TCTACCTCGATGCCGCCGCGGACCACGACAATACCCTGTGTCGTC--TG--TATCTGACG 138 Query 33788 CC----GACGACGCGCTAAATTCTGAGTGGATAAGCCACGGTGCAATCTGGAATAACCCA 33843 || || || || || | ||| |||| ||| ||| || |||| || || Sbjct 139 CCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGCACCGGCGCCATCTTCTGCAATCCC 198 Query 33844 CCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGA 33903 ||||||||||||||| | || ||||| || ||||| ||||||||| || | ||| Sbjct 199 CCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCTGCTGAGCAGAGCCGCAAGCAGAAT 258 Query 33904 CAGACGGTAGTGATGCTTGTGCCAGAGGATATGTCTGTCGGATGGTTCAGCA-AGGCTCT 33962 | ||||| || ||||| |||| | ||||| || ||||||||| ||| |||| | Sbjct 259 AAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCGACGGGATGGTTC-GCACAGGCACA 317 Query 33963 GGAGAGTATTGACGAAGTTCGCATCATCACTGATGGACG 34001 | | | |||| || || ||| ||||||| || || || Sbjct 318 GAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGGGCG 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122699100001494