Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq33 159 3e-34 seq419 140 3e-28 seq5 87.8 1e-12 >seq33 Length=2490231 Score = 159 bits (176), Expect = 3e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || |||| ||||||| | || ||||| |||||||||||||||| ||| || ||| Sbjct 181470 GATTTAGATCATTGGACTAGGTTGAAACCTGAAGAAAAACATTTTATTTCTCATGTATTG 181529 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || |||||||| || || || || |||||||| || ||| ||||| ||| Sbjct 181530 GCTTTCTTTGCTGCCTCTGATGGAATTGTTAATGAAAACTTAGTTGAGAGGTTTAGTCAA 181589 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||||||| || | |||||| |||||||||| || || |||||||| || |||||| || Sbjct 181590 GAAGTTCAAGTAACTGAAGCAAGATGTTTTTACGGTTTCCAAATTGCAATGGAAAATGTT 181649 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 || || || ||||||||| | || |||||||| || || Sbjct 181650 CACTCTGAGATGTACAGTTTACTCATAGATACTTATAT 181687 Score = 104 bits (114), Expect = 2e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| | ||||||||| |||| ||||| |||||||||||||||||||||||| | Sbjct 181196 AGATTTGTGATATTTCCAATTGAATACCATGATATATGGCAAATGTACAAAAAAGCAGAA 181255 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 ||||| |||||||| | |||||||||||| Sbjct 181256 GCGTCTTTTTGGACGGTTGAAGAAGTTGAT 181285 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/186 (73%), Gaps = 7/186 (4%) Strand=Plus/Plus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAA---TGATTCTTTTGGAGAACGACTT 44134 ||||| |||||||| | ||||||| || || || |||||| |||| || || Sbjct 182467 AAAGCTGACTGGGCTTTGGAATGGATCTCCTCTAAGACTGCCACTTTTGCAGAAAGAATT 182526 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 | || ||||| | |||||||||| | || || || || |||||||| ||||||||| Sbjct 182527 ATTGCTTTTGCTGCTGTGGAAGGCGTATTTTTCTCTGGTAGCTTTGCGGCTATATTTTGG 182586 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTG 44252 ||||||||| |||| || ||||| ||| | || ||||| ||||| || || | | | Sbjct 182587 TTAAAGAAAAGAGGATTAATGCCAGGGCTTAC--TTTCAGCAATGAATTGATTTCTAGAG 182644 Query 44253 ATGAAG 44258 |||||| Sbjct 182645 ATGAAG 182650 >seq419 Length=433256 Score = 140 bits (154), Expect = 3e-28 Identities = 239/343 (70%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 |||||| || ||||| ||||||||||| |||| ||| ||| | || ||||| ||||| | Sbjct 410428 AGGTGACCTGGGTCCAGTTTATGGATTCCAGTGGCGTCATCTGGGTGCAAAGTATGAAAA 410369 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 ||| | |||| || | |||||||| || ||| | |||||| | || | Sbjct 410368 CATGCATACTGACTACGCATGCAAAGGAATCGACCAACTGGCCAACGTTATCAACTCGTT 410309 Query 40985 TAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 ||| | |||| |||| || ||||| || || || ||||||||| ||| | Sbjct 410308 AAAAAACAATCCTCACGAT---CGTCGTATTATTATGACTGCTTGGAACCCACTGGATTT 410252 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTG 41100 | ||||||||| | ||||||||||| ||||| ||| || || || ||| ||||| | Sbjct 410251 GAAATTGATGGCACTACCACCTTGTCA-TTGTTTTGTACAATTCTATTGTTGTAATGGGG 410193 Query 41101 AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACA 41160 || ||||| || ||||||| | || | ||||||||| || || ||||| || |||| Sbjct 410192 AATTGTCAGCACAGATGTATCAGCGTTCGGCTGACATGGGGCTTGGAGTCCCATTCAACA 410133 Query 41161 TAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | || |||| | ||||| | ||||||| || || |||| Sbjct 410132 TTGCATCTTATTCGCTGCTTATACATATGATAGCCCATATTAC 410090 >seq5 Length=4762315 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || ||||||||||| ||| | ||||| | |||||||| ||| |||| |||| |||| Sbjct 2514616 CCGAAGATTGTAAATGGACCTCAGATCTTGGACAAATATGTGGGTGAATCAGAAGCAAAT 2514675 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526 | || | | ||||||||||| |||||||||||||| Sbjct 2514676 ATTAGAAGACTATTTGCTGACGCAGAAGAAGAACAAAA 2514713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397375894854685