Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3969 122 1e-22 >seq3969 Length=6340 Score = 122 bits (134), Expect = 1e-22 Identities = 287/426 (67%), Gaps = 22/426 (5%) Strand=Plus/Plus Query 9475 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 9534 || ||||| ||| || || |||||| || ||| | || | || ||| ||||| || Sbjct 1606 CAGGATCTGCTCACGACCACGAACATCCGGCAGACCAACCACTACCTGACGGTCAAAACG 1665 Query 9535 ACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAAC 9594 || ||||| || | || ||||| | ||| || || || ||||| || || | Sbjct 1666 GCCCGGACGCAGCAATGCAGGGTCAAGCACGTCAGGACGGTTGGTGGCGGCAATCACGAT 1725 Query 9595 AATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTG 9651 ||| ||| ||||| ||||||||||||||||| || | ||||| | ||||| Sbjct 1726 AATGCCT---TCATTGCCTTCAAAACCATCCATCTCAACCAGCATCTGGTTCAGGGTTTG 1782 Query 9652 TTCCCGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAA 9710 ||| |||||||||| | || | ||| |||| ||||| || |||||||| | Sbjct 1783 TTCACGTTCATCATGACCACCGCCCA-GACCCGCACCACGTTGGCGACCGACGGCATCGA 1841 Query 9711 TCTCATCAATGAAGACGATGCATGG------TTGATTTTCGCGAGCGACTTCAAAGAGAT 9764 | ||||||||||||| ||| || || || ||||||| || || || | | Sbjct 1842 TTTCATCAATGAAGATGATACAAGGCGCGGCTT--TTTTCGCCTGC----TCGAACATGT 1895 Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824 | || ||||| || || ||||| || |||||||| ||||||| | ||||| || Sbjct 1896 CACGCACACGAGATGCACCGACACCCACGAACATCTCAACAAAGTCAGAACCGGAA-ATG 1954 Query 9825 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883 | || || || || || | |||||| ||||| || ||| || || |||||||| || Sbjct 1955 GTGAAAAATGGCACCTTCGCTTCACCGGCAATCGCCTTGGCAAGCAGGGTCTTACCTGTT 2014 Query 9884 CCTGGC 9889 || ||| Sbjct 2015 CCCGGC 2020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583140232701880