Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq2192 203 1e-47 seq3409 150 7e-32 seq6242 104 9e-18 seq4482 102 3e-17 seq2784 93.3 2e-14 seq4809 91.5 6e-14 >seq2192 Length=16777 Score = 203 bits (224), Expect = 1e-47 Identities = 361/516 (70%), Gaps = 27/516 (5%) Strand=Plus/Plus Query 16950 AGCTGTTTTTCCATGCGATCGAATTCAGCAATATAGGCTTCCTTGAATGCAGCTGCTTTT 17009 ||||| | ||||||||| | || || ||||| || ||||||||||| || ||||||||| Sbjct 15637 AGCTGCTCTTCCATGCGGTTAAACTCCGCAATGTAAGCTTCCTTGAACGCTGCTGCTTTT 15696 Query 17010 TTACCAGTGAAGCCCATCACCAGGAAGACGAATCCGTTTTTGGTGATTTGGTACATTGGG 17069 || || ||||||||||| || || || | ||| |||| ||||| || ||||| || Sbjct 15697 TTGCCGGTGAAGCCCATGACGAGAAAAATGAAGCCGTCCTTGGTTATGGTATACATCGGT 15756 Query 17070 CGTTGTTCGCCTTTGGCGTCGGTGTAGGTAACGTCCTCAAAATTGAGGGCGTTAAATTTC 17129 ||| |||| || ||||||||| | |||||||||||||||| ||||||| Sbjct 15757 AGTTTGCGGCCTGTGCTGTCGGTGTATTCACTCACCTCAAAATTGAGGGCAGTAAATTTT 15816 Query 17130 TCTGAGCATTCAATATTTGCAATGGCACGTAATACGTTATCGTGTCGCTTGCAAAAATAT 17189 || ||||| |||| | |||||| ||||||||||||||||| |||||| ||| || Sbjct 15817 TCAGAGCAATCAAGGCGTTCAATGGTGCGTAATACGTTATCGTGACGCTTGTCAAAGTAA 15876 Query 17190 TCGGCAACGGCAAAGGACGTAGTAACAGCGCGGCCATTGGAAATGGTGATTTCAGGTTGA 17249 || |||||| | || || ||||| ||||| |||||| || |||| || ||| | Sbjct 15877 TCAGCAACGTCCAATGATGTAGTTACAGCTTTACCATTGCGGATAGTGACTTTGGGTGCA 15936 Query 17250 GAAAGGACTG--GGATAGTAGCCATAATGGCAGCCTCC-TTG---ATTGGTGATTAATAA 17303 | |||| || || ||| | ||||||| ||||| || || | ||||| | Sbjct 15937 GCAAGGCTTGTTTGA-AGT-GTCATAATG---ACCTCCGGTGACAATCTGAATTTAATCA 15991 Query 17304 CCACCGCAGGAGGTGAGAAGCTC--GCTGGCGGTGGACTGTACAGGGTTCTCACAACTGG 17361 |||| || |||||| || ||| ||| |||| |||| |||||||| ||| || || Sbjct 15992 CCAC--CAAGAGGTGCAAAACTCATATTGGTGGTGAACTGAACAGGGTTTGCACTACCGG 16049 Query 17362 CAATCAAGGGAACCAGCCCGACCGAAGTCG---GCCCCATACAGCCCACCATTGATAAGA 17418 | | | | | | || ||| ||| |||| || ||||||||||||| ||| Sbjct 16050 GATT----GTCATCCGGCCTACC--TTTCGGTAGCCCTATCCAGCCCACCATTG---AGA 16100 Query 17419 TGTGCGTGTATGTCGATACaaaaaaaGACGCTGGCG 17454 || | | || ||| | ||||||| ||||| ||| Sbjct 16101 TGCGGCTAGATTGCGACATAAAAAAACACGCTCGCG 16136 >seq3409 Length=8325 Score = 150 bits (166), Expect = 7e-32 Identities = 264/382 (69%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 32146 GCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGT 32205 || || | ||| || | || |||||||| || ||| |||| | || ||||| ||||| Sbjct 3032 GCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 3091 Query 32206 AAGCCTGTGATTCCTGGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCTATC 32265 ||||| || | |||||||||||| | | | || | | || | || Sbjct 3092 AAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCA 3151 Query 32266 GAACGGGATAAGGCGCTGGCATGGGTGGAGCGTAATATAAAAGTTCCACTGACCGAGCCA 32325 |||| | | |||||||| | |||||||| || || | ||||| || || || ||| | Sbjct 3152 GAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACT 3211 Query 32326 CAAAAAGCAGGTATCGCGTCATTTTGCCCCTATAACATTGGCCCCGGTAAGTGTTTCCCG 32385 || |||| || || || |||||||| || | || || || |||||||| || ||| | Sbjct 3212 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 3271 Query 32386 TCGACGTTTTATAAGCGGCTT-AATGCAGGCGATCGCAGGGGAGCGTGTGAGGCGATTCG 32444 || ||||| || || || ||||| ||||||| || || || || | | |||| Sbjct 3272 TCAACGTTCTACC-GCAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAA 3330 Query 32445 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATCCGTTCAAACAACTGTTACGGTCA 32504 | |||||| |||||| |||| ||| ||||||||||| | || ||||||||||| || Sbjct 3331 GCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCA 3390 Query 32505 GGTATCAAGACGTGACCAGGAG 32526 | || | | |||||||||||| Sbjct 3391 GATAGCGCGGCGTGACCAGGAG 3412 Score = 134 bits (148), Expect = 6e-27 Identities = 303/450 (67%), Gaps = 9/450 (2%) Strand=Plus/Plus Query 32837 ATGACCGTGCCGTTTCACGGCGATTCTCTTTATGTGGTTAACCATAACGGCGAACCATAC 32896 || ||||| |||||||| || || | || ||||| |||||| ||||| ||||| || Sbjct 5128 ATCACCGTTCCGTTTCATGGAAATGCCCTGTATGTCGTTAACTGTAACGATGAACCCTAT 5187 Query 32897 GTTCCCATGAAACCTGTCGTTGCGGGGATGGGGCTGGCCTGGCAATCACAGTTGGCTAAG 32956 || ||| || || ||| ||| |||||| |||| | || ||| || |||| Sbjct 5188 ACCCCGATGCGCCCAATCATTGAGGGTATGGGGTTGGCATACCAGGGTCAGGCGGGTAAG 5247 Query 32957 TTAAGACAGCGTTTTGCGTCAACTA--TAACGGAAATCGTTATGGTTGCTGAGGATGGGA 33014 || | | || ||||| ||| | | ||||||| | || | | | | ||| Sbjct 5248 TTGAAATCTCGCTTTGC--CAAGGGGGTCATGGAAATCATGATCCCTACCCAAGGTGGCC 5305 Query 33015 AACGACGCAATATGGTGTCCCTGCCGCTTCGAAAACTTGCAGGCTGGTTACAAACCATCA 33074 || | || ||| | | || | || || ||| | || | |||| | | ||| Sbjct 5306 CACAA---AAAATGCTTTGTCTACAACTCCGCAAATTGGCTGCCTGGCTGGCCAGTATCC 5362 Query 33075 ATCCCAACAAAGTAAAACCCGAAATCCGCGGCAAGGTAATCCAGTATCAGGAAGAGTGTG 33134 | || || ||||| || || |||| |||| ||| || | ||||||||||| ||||| | Sbjct 5363 AGCCGAATAAAGTTAAGCCAGAAAGTCGCGACAAAGTGGTTCAGTATCAGGAGGAGTGCG 5422 Query 33135 ACGATGTTCTCTATGAATACTGGACGAAGGGTTTTGTCGTTAATCCCCGTCGAATG-AGT 33193 | || || ||||||||||||||||| || ||| || |||||||| | | | || Sbjct 5423 ATGACGTGCTCTATGAATACTGGACAAAAGGTCAGGTTACCAATCCCCG-CAAGCGCAGC 5481 Query 33194 GTGATGGAAGAACTCAATCAGGCTTGCGCTGACATGAAACGGGATAAAAACATTGCCAGT 33253 || ||| | ||||||||| |||||||| ||| | ||| ||| ||| | ||||||| Sbjct 5482 GTCATGCAGGAACTCAATGCCGCTTGCGCCGACTTAAAAACGGACAAAGCCGTTGCCAGC 5541 Query 33254 GTGTTTGCTACCGGGCTGAATGAGTGGAAA 33283 ||||||| || || |||| ||||||||| Sbjct 5542 GTGTTTGGCACGGGATTGAACGAGTGGAAA 5571 >seq6242 Length=2873 Score = 104 bits (114), Expect = 9e-18 Identities = 151/202 (75%), Gaps = 15/202 (7%) Strand=Plus/Plus Query 5348 ATCACCACCGTTAGGTT-CGAATC--ATCGGGTGGTGAGACGTACAGGGTTCG-AACTAC 5403 ||||||||| ||||| |||||| || || |||||| | |||||||||| |||||| Sbjct 1539 ATCACCACCTAGAGGTTTCGAATCTCATTTGGCGGTGAGCTGAACAGGGTTCGAAACTAC 1598 Query 5404 CGG-GAAAC----CAACCGGCGAGCTTTTCAGCTCCCCTATACGCCCCACCATAATTCAG 5458 ||| |||| | ||||||||| || | ||||||| || | |||||||| |||||| Sbjct 1599 CGGCTAAACAGGAGACCCGGCGAGCCTTGCGGCTCCCCCATCCAGCCCACCATTATTCAG 1658 Query 5459 ATGTGCGCGTGCATACGACAATAAAAAACACGCTCGCGGCGTGTCTCTGTCGCGGTTT-- 5516 || || ||| | ||| || |||||||||||| ||||||| | || | |||| Sbjct 1659 ATATG-GCGGACCGACG-CATAAAAAAACACGCTGTAGGCGTGT-TATGCGCCTGTTTAG 1715 Query 5517 CTATCCGGGG-TTCGAATCCCG 5537 ||||||||| ||||||||||| Sbjct 1716 TTATCCGGGGTTTCGAATCCCG 1737 >seq4482 Length=5216 Score = 102 bits (112), Expect = 3e-17 Identities = 170/237 (72%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 5308 TTGAGTTGTCATTATGACGCCCTCGAGTGGTTTCTAAAC--TATCACCACCGTTAGGTTC 5365 |||| |||||| ||| |||| |||||||||| |||||||||| |||| | Sbjct 1620 TTGAAGTGTCATAGCGACAACCTCCAGTGGTTTCTTTGTGTTATCACCACCAAGAGGTGC 1679 Query 5366 GAA--TCATCG-GGTGGTGAGACGTACAGGGTTCGAACTACCGG-GAAACCAACCGGCGA 5421 || |||| |||||||| | |||||||| | |||||||| |||||| ||||| | Sbjct 1680 AAAACTCATATTGGTGGTGAACTGAACAGGGTTTGCACTACCGGAGAAACCGCCCGGCCA 1739 Query 5422 GCTTTTCAGCTCCCCTATACGCCCCACCATAATTCAGATGTGCGCGTGCATACGACAATA 5481 |||| | ||| || | ||||||||| ||||| | || | || | ||| | Sbjct 1740 ATCTTTCGATTGCCCCATCCAGCCCACCATAG---AGATGGG-GCTTTCA---GGCAACA 1792 Query 5482 AAAAACACGCTCGCGGCGTGTCTCTGTCGCGGTTTC-TATCCGGGGTTCGAATCCCG 5537 ||||||||||||||||||||| |||||||||||| || |||||| | || |||| Sbjct 1793 AAAAACACGCTCGCGGCGTGTTGTTGTCGCGGTTTCATAATCGGGGTGCAAAGCCCG 1849 >seq2784 Length=12453 Score = 93.3 bits (102), Expect = 2e-14 Identities = 144/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 21218 ACAGCGCTTTGGGTAACACCTAATTCATAGGCTAATGATTCCTGCGACAGGCCTAACTCT 21277 ||| ||||||| | | ||||| |||| ||||| || || || || | ||||| |||| Sbjct 6291 ACACCGCTTTGCCTCATACCTAGCTCATGGGCTATAGACTCTTGTGAAAAGCCTAGCTCT 6232 Query 21278 TTCTT-TTTAGCGTTAAAAATACTTTTCAGACGCTTGGCGTCTTCCAGTTGCTCAGGGGT 21336 || || |||| | | |||||| || || || | | | || ||||| || || ||||| | Sbjct 6231 TTTTTCTTTAAC-TCAAAAATGCTCTTGAGCCTCATCGCATCTTCAAGCTGTTCAGGACT 6173 Query 21337 TAACGGTTTCTTTTTCATGTTCATACCATATCACCTTTGGTTATATGTAATGAAATATCT 21396 ||| | |||||||||||| | | | |||||||| | | |||| || ||| | Sbjct 6172 TAATGTTTTCTTTTTCATATAAAAATGATATCACCAATTGGAATAT-CAAACAAAAACAG 6114 Query 21397 GCGGTGTTGACATTTTAATAAC 21418 |||||||||| | |||||||| Sbjct 6113 ACGGTGTTGACTTATTAATAAC 6092 >seq4809 Length=3389 Score = 91.5 bits (100), Expect = 6e-14 Identities = 201/298 (67%), Gaps = 9/298 (3%) Strand=Plus/Minus Query 4971 TGAAATAGCAGTCTTCCAGTTTTTCGAACACTTCCCACGCCCGATCGGTTTCGAGCATTT 5030 |||| || || |||| ||| | ||||| |||||||| | |||||||||||||||| | Sbjct 1113 TGAAGTAACAATCTTTCAGCTGCTCGAATACTTCCCATTCTTGATCGGTTTCGAGCATCT 1054 Query 5031 TTGCGTGACGGGCTGCGCCGCGTTCTGTCCAGAGGATGAGGGAGCGAACGTTACGGGCGA 5090 | || || | || || ||||| ||||||||||| ||||| |||| ||| ||| || Sbjct 1053 TGGCATGCCTAGCGGCTCCGCGCTCTGTCCAGAGAATGAGACTGCGA--GTTTTGGGTGA 996 Query 5091 TTTTCACAGAGTAGTTAAAAGCTACTCTGTGCTTGAACTCACGTAAAGTTTCACCTTCAA 5150 | || || ||| | |||| ||||| || ||| | |||| || Sbjct 995 TATTTGCA-AGTGTCTTAAAGACACTCTCAAATT---ATCAAGGTCAGTT---CCGGTTG 943 Query 5151 GTTTGAAGAAGTGTTTTTCCTCAATGAAACGACCTTTGTTTTCGTGGTGATTCTGGCGAA 5210 |||| | || || || | |||| ||| ||| | || || |||||| | ||| | Sbjct 942 TTTTGTAAAAATGCTTGCCATCAACGAACCGATCAGCATTACGGTTGTGATTTTTGCGGA 883 Query 5211 TACGAATAGCTTCTGTGCCGTAAAGGTGCGCCAAAAGTTCGGTAGTGATAACGGGGAT 5268 | | || | |||||||||||||| | || ||||| || ||||| ||||| || || Sbjct 882 TTCTAACTGGCTCTGTGCCGTAAAGCTCAGCTAAAAGCTCAGTAGTAATAACAGGAAT 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203255026771210