Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq2192 203 1e-47 seq3409 150 8e-32 seq6242 104 1e-17 seq4482 102 3e-17 seq2784 93.3 2e-14 seq4809 91.5 6e-14 >seq2192 Length=16777 Score = 203 bits (224), Expect = 1e-47 Identities = 361/516 (70%), Gaps = 27/516 (5%) Strand=Plus/Plus Query 17007 AGCTGTTTTTCCATGCGATCGAATTCAGCAATATAGGCTTCCTTGAATGCAGCTGCTTTT 17066 ||||| | ||||||||| | || || ||||| || ||||||||||| || ||||||||| Sbjct 15637 AGCTGCTCTTCCATGCGGTTAAACTCCGCAATGTAAGCTTCCTTGAACGCTGCTGCTTTT 15696 Query 17067 TTACCAGTGAAGCCCATCACCAGGAAGACGAATCCGTTTTTGGTGATTTGGTACATTGGG 17126 || || ||||||||||| || || || | ||| |||| ||||| || ||||| || Sbjct 15697 TTGCCGGTGAAGCCCATGACGAGAAAAATGAAGCCGTCCTTGGTTATGGTATACATCGGT 15756 Query 17127 CGTTGTTCGCCTTTGGCGTCGGTGTAGGTAACGTCCTCAAAATTGAGGGCGTTAAATTTC 17186 ||| |||| || ||||||||| | |||||||||||||||| ||||||| Sbjct 15757 AGTTTGCGGCCTGTGCTGTCGGTGTATTCACTCACCTCAAAATTGAGGGCAGTAAATTTT 15816 Query 17187 TCTGAGCATTCAATATTTGCAATGGCACGTAATACGTTATCGTGTCGCTTGCAAAAATAT 17246 || ||||| |||| | |||||| ||||||||||||||||| |||||| ||| || Sbjct 15817 TCAGAGCAATCAAGGCGTTCAATGGTGCGTAATACGTTATCGTGACGCTTGTCAAAGTAA 15876 Query 17247 TCGGCAACGGCAAAGGACGTAGTAACAGCGCGGCCATTGGAAATGGTGATTTCAGGTTGA 17306 || |||||| | || || ||||| ||||| |||||| || |||| || ||| | Sbjct 15877 TCAGCAACGTCCAATGATGTAGTTACAGCTTTACCATTGCGGATAGTGACTTTGGGTGCA 15936 Query 17307 GAAAGGACTG--GGATAGTAGCCATAATGGCAGCCTCC-TTG---ATTGGTGATTAATAA 17360 | |||| || || ||| | ||||||| ||||| || || | ||||| | Sbjct 15937 GCAAGGCTTGTTTGA-AGT-GTCATAATG---ACCTCCGGTGACAATCTGAATTTAATCA 15991 Query 17361 CCACCGCAGGAGGTGAGAAGCTC--GCTGGCGGTGGACTGTACAGGGTTCTCACAACTGG 17418 |||| || |||||| || ||| ||| |||| |||| |||||||| ||| || || Sbjct 15992 CCAC--CAAGAGGTGCAAAACTCATATTGGTGGTGAACTGAACAGGGTTTGCACTACCGG 16049 Query 17419 CAATCAAGGGAACCAGCCCGACCGAAGTCG---GCCCCATACAGCCCACCATTGATAAGA 17475 | | | | | | || ||| ||| |||| || ||||||||||||| ||| Sbjct 16050 GATT----GTCATCCGGCCTACC--TTTCGGTAGCCCTATCCAGCCCACCATTG---AGA 16100 Query 17476 TGTGCGTGTATGTCGATACaaaaaaaGACGCTGGCG 17511 || | | || ||| | ||||||| ||||| ||| Sbjct 16101 TGCGGCTAGATTGCGACATAAAAAAACACGCTCGCG 16136 >seq3409 Length=8325 Score = 150 bits (166), Expect = 8e-32 Identities = 264/382 (69%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 32206 GCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGT 32265 || || | ||| || | || |||||||| || ||| |||| | || ||||| ||||| Sbjct 3032 GCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 3091 Query 32266 AAGCCTGTGATTCCTGGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCTATC 32325 ||||| || | |||||||||||| | | | || | | || | || Sbjct 3092 AAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCA 3151 Query 32326 GAACGGGATAAGGCGCTGGCATGGGTGGAGCGTAATATAAAAGTTCCACTGACCGAGCCA 32385 |||| | | |||||||| | |||||||| || || | ||||| || || || ||| | Sbjct 3152 GAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACT 3211 Query 32386 CAAAAAGCAGGTATCGCGTCATTTTGCCCCTATAACATTGGCCCCGGTAAGTGTTTCCCG 32445 || |||| || || || |||||||| || | || || || |||||||| || ||| | Sbjct 3212 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 3271 Query 32446 TCGACGTTTTATAAGCGGCTT-AATGCAGGCGATCGCAGGGGAGCGTGTGAGGCGATTCG 32504 || ||||| || || || ||||| ||||||| || || || || | | |||| Sbjct 3272 TCAACGTTCTACC-GCAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAA 3330 Query 32505 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATCCGTTCAAACAACTGTTACGGTCA 32564 | |||||| |||||| |||| ||| ||||||||||| | || ||||||||||| || Sbjct 3331 GCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCA 3390 Query 32565 GGTATCAAGACGTGACCAGGAG 32586 | || | | |||||||||||| Sbjct 3391 GATAGCGCGGCGTGACCAGGAG 3412 Score = 134 bits (148), Expect = 6e-27 Identities = 303/450 (67%), Gaps = 9/450 (2%) Strand=Plus/Plus Query 34216 ATGACCGTGCCGTTTCACGGCGATTCTCTTTATGTGGTTAACCATAACGGCGAACCATAC 34275 || ||||| |||||||| || || | || ||||| |||||| ||||| ||||| || Sbjct 5128 ATCACCGTTCCGTTTCATGGAAATGCCCTGTATGTCGTTAACTGTAACGATGAACCCTAT 5187 Query 34276 GTTCCCATGAAACCTGTCGTTGCGGGGATGGGGCTGGCCTGGCAATCACAGTTGGCTAAG 34335 || ||| || || ||| ||| |||||| |||| | || ||| || |||| Sbjct 5188 ACCCCGATGCGCCCAATCATTGAGGGTATGGGGTTGGCATACCAGGGTCAGGCGGGTAAG 5247 Query 34336 TTAAGACAGCGTTTTGCGTCAACTA--TAACGGAAATCGTTATGGTTGCTGAGGATGGGA 34393 || | | || ||||| ||| | | ||||||| | || | | | | ||| Sbjct 5248 TTGAAATCTCGCTTTGC--CAAGGGGGTCATGGAAATCATGATCCCTACCCAAGGTGGCC 5305 Query 34394 AACGACGCAATATGGTGTCCCTGCCGCTTCGAAAACTTGCAGGCTGGTTACAAACCATCA 34453 || | || ||| | | || | || || ||| | || | |||| | | ||| Sbjct 5306 CACAA---AAAATGCTTTGTCTACAACTCCGCAAATTGGCTGCCTGGCTGGCCAGTATCC 5362 Query 34454 ATCCCAACAAAGTAAAACCCGAAATCCGCGGCAAGGTAATCCAGTATCAGGAAGAGTGTG 34513 | || || ||||| || || |||| |||| ||| || | ||||||||||| ||||| | Sbjct 5363 AGCCGAATAAAGTTAAGCCAGAAAGTCGCGACAAAGTGGTTCAGTATCAGGAGGAGTGCG 5422 Query 34514 ACGATGTTCTCTATGAATACTGGACGAAGGGTTTTGTCGTTAATCCCCGTCGAATG-AGT 34572 | || || ||||||||||||||||| || ||| || |||||||| | | | || Sbjct 5423 ATGACGTGCTCTATGAATACTGGACAAAAGGTCAGGTTACCAATCCCCG-CAAGCGCAGC 5481 Query 34573 GTGATGGAAGAACTCAATCAGGCTTGCGCTGACATGAAACGGGATAAAAACATTGCCAGT 34632 || ||| | ||||||||| |||||||| ||| | ||| ||| ||| | ||||||| Sbjct 5482 GTCATGCAGGAACTCAATGCCGCTTGCGCCGACTTAAAAACGGACAAAGCCGTTGCCAGC 5541 Query 34633 GTGTTTGCTACCGGGCTGAATGAGTGGAAA 34662 ||||||| || || |||| ||||||||| Sbjct 5542 GTGTTTGGCACGGGATTGAACGAGTGGAAA 5571 >seq6242 Length=2873 Score = 104 bits (114), Expect = 1e-17 Identities = 151/202 (75%), Gaps = 15/202 (7%) Strand=Plus/Plus Query 5405 ATCACCACCGTTAGGTT-CGAATC--ATCGGGTGGTGAGACGTACAGGGTTCG-AACTAC 5460 ||||||||| ||||| |||||| || || |||||| | |||||||||| |||||| Sbjct 1539 ATCACCACCTAGAGGTTTCGAATCTCATTTGGCGGTGAGCTGAACAGGGTTCGAAACTAC 1598 Query 5461 CGG-GAAAC----CAACCGGCGAGCTTTTCAGCTCCCCTATACGCCCCACCATAATTCAG 5515 ||| |||| | ||||||||| || | ||||||| || | |||||||| |||||| Sbjct 1599 CGGCTAAACAGGAGACCCGGCGAGCCTTGCGGCTCCCCCATCCAGCCCACCATTATTCAG 1658 Query 5516 ATGTGCGCGTGCATACGACAATAAAAAACACGCTCGCGGCGTGTCTCTGTCGCGGTTT-- 5573 || || ||| | ||| || |||||||||||| ||||||| | || | |||| Sbjct 1659 ATATG-GCGGACCGACG-CATAAAAAAACACGCTGTAGGCGTGT-TATGCGCCTGTTTAG 1715 Query 5574 CTATCCGGGG-TTCGAATCCCG 5594 ||||||||| ||||||||||| Sbjct 1716 TTATCCGGGGTTTCGAATCCCG 1737 >seq4482 Length=5216 Score = 102 bits (112), Expect = 3e-17 Identities = 170/237 (72%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 5365 TTGAGTTGTCATTATGACGCCCTCGAGTGGTTTCTAAAC--TATCACCACCGTTAGGTTC 5422 |||| |||||| ||| |||| |||||||||| |||||||||| |||| | Sbjct 1620 TTGAAGTGTCATAGCGACAACCTCCAGTGGTTTCTTTGTGTTATCACCACCAAGAGGTGC 1679 Query 5423 GAA--TCATCG-GGTGGTGAGACGTACAGGGTTCGAACTACCGG-GAAACCAACCGGCGA 5478 || |||| |||||||| | |||||||| | |||||||| |||||| ||||| | Sbjct 1680 AAAACTCATATTGGTGGTGAACTGAACAGGGTTTGCACTACCGGAGAAACCGCCCGGCCA 1739 Query 5479 GCTTTTCAGCTCCCCTATACGCCCCACCATAATTCAGATGTGCGCGTGCATACGACAATA 5538 |||| | ||| || | ||||||||| ||||| | || | || | ||| | Sbjct 1740 ATCTTTCGATTGCCCCATCCAGCCCACCATAG---AGATGGG-GCTTTCA---GGCAACA 1792 Query 5539 AAAAACACGCTCGCGGCGTGTCTCTGTCGCGGTTTC-TATCCGGGGTTCGAATCCCG 5594 ||||||||||||||||||||| |||||||||||| || |||||| | || |||| Sbjct 1793 AAAAACACGCTCGCGGCGTGTTGTTGTCGCGGTTTCATAATCGGGGTGCAAAGCCCG 1849 >seq2784 Length=12453 Score = 93.3 bits (102), Expect = 2e-14 Identities = 144/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 21275 ACAGCGCTTTGGGTAACACCTAATTCATAGGCTAATGATTCCTGCGACAGGCCTAACTCT 21334 ||| ||||||| | | ||||| |||| ||||| || || || || | ||||| |||| Sbjct 6291 ACACCGCTTTGCCTCATACCTAGCTCATGGGCTATAGACTCTTGTGAAAAGCCTAGCTCT 6232 Query 21335 TTCTT-TTTAGCGTTAAAAATACTTTTCAGACGCTTGGCGTCTTCCAGTTGCTCAGGGGT 21393 || || |||| | | |||||| || || || | | | || ||||| || || ||||| | Sbjct 6231 TTTTTCTTTAAC-TCAAAAATGCTCTTGAGCCTCATCGCATCTTCAAGCTGTTCAGGACT 6173 Query 21394 TAACGGTTTCTTTTTCATGTTCATACCATATCACCTTTGGTTATATGTAATGAAATATCT 21453 ||| | |||||||||||| | | | |||||||| | | |||| || ||| | Sbjct 6172 TAATGTTTTCTTTTTCATATAAAAATGATATCACCAATTGGAATAT-CAAACAAAAACAG 6114 Query 21454 GCGGTGTTGACATTTTAATAAC 21475 |||||||||| | |||||||| Sbjct 6113 ACGGTGTTGACTTATTAATAAC 6092 >seq4809 Length=3389 Score = 91.5 bits (100), Expect = 6e-14 Identities = 201/298 (67%), Gaps = 9/298 (3%) Strand=Plus/Minus Query 5028 TGAAATAGCAGTCTTCCAGTTTTTCGAACACTTCCCACGCCCGATCGGTTTCGAGCATTT 5087 |||| || || |||| ||| | ||||| |||||||| | |||||||||||||||| | Sbjct 1113 TGAAGTAACAATCTTTCAGCTGCTCGAATACTTCCCATTCTTGATCGGTTTCGAGCATCT 1054 Query 5088 TTGCGTGACGGGCTGCGCCGCGTTCTGTCCAGAGGATGAGGGAGCGAACGTTACGGGCGA 5147 | || || | || || ||||| ||||||||||| ||||| |||| ||| ||| || Sbjct 1053 TGGCATGCCTAGCGGCTCCGCGCTCTGTCCAGAGAATGAGACTGCGA--GTTTTGGGTGA 996 Query 5148 TTTTCACAGAGTAGTTAAAAGCTACTCTGTGCTTGAACTCACGTAAAGTTTCACCTTCAA 5207 | || || ||| | |||| ||||| || ||| | |||| || Sbjct 995 TATTTGCA-AGTGTCTTAAAGACACTCTCAAATT---ATCAAGGTCAGTT---CCGGTTG 943 Query 5208 GTTTGAAGAAGTGTTTTTCCTCAATGAAACGACCTTTGTTTTCGTGGTGATTCTGGCGAA 5267 |||| | || || || | |||| ||| ||| | || || |||||| | ||| | Sbjct 942 TTTTGTAAAAATGCTTGCCATCAACGAACCGATCAGCATTACGGTTGTGATTTTTGCGGA 883 Query 5268 TACGAATAGCTTCTGTGCCGTAAAGGTGCGCCAAAAGTTCGGTAGTGATAACGGGGAT 5325 | | || | |||||||||||||| | || ||||| || ||||| ||||| || || Sbjct 882 TTCTAACTGGCTCTGTGCCGTAAAGCTCAGCTAAAAGCTCAGTAGTAATAACAGGAAT 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210888687937212