Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq2192 219 2e-52 seq1577 179 1e-40 seq3409 150 7e-32 seq1599 147 9e-31 seq3892 132 2e-26 seq2784 93.3 2e-14 seq4482 82.4 3e-11 >seq2192 Length=16777 Score = 219 bits (242), Expect = 2e-52 Identities = 232/306 (76%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 20063 CCTTTCTCAACCTGAAATCACCATTTCCAATGGTCGCGCTGTTACTACGTCCTTTGCCGT 20122 |||| || ||| || |||| || ||||||| ||||| ||||| || || | ||| Sbjct 15942 CCTTGCTGCACCCAAAGTCACTATCCGCAATGGTAAAGCTGTAACTACATCATTGGACGT 15883 Query 20123 TGCCGAATATTTTTGCAAGCGACACGATAACGTATTGCGCGCCATTGCAAATATTGAATG 20182 ||| || || ||| |||||| |||||||||||||| ||| |||||| | |||| || Sbjct 15882 TGCTGATTACTTTGACAAGCGTCACGATAACGTATTACGCACCATTGAACGCCTTGATTG 15823 Query 20183 CTCAGAGAAATTTAACGCCCTCAATTTTGAGGACGTTACCTACACCGACGCCAAAGGCGA 20242 ||| || ||||||| |||||||||||||||| | ||||||||| || |||| Sbjct 15822 CTCTGAAAAATTTACTGCCCTCAATTTTGAGGTGAGTGAATACACCGACAGCACAGGCCG 15763 Query 20243 ACAACGCCCAATGTACCAAATCACCAAAAACGGCTTCGTTTTTCTGGTGATGGGCTTCAC 20302 ||| || ||||| || ||||| |||||||| ||||||| || ||||||||||| Sbjct 15762 CAAACTACCGATGTATACCATAACCAAGGACGGCTTCATTTTTCTCGTCATGGGCTTCAC 15703 Query 20303 CGGCAAAAAAGCAGCTGCATTCAAGGAAGCCTACATTGCTGAATTCGATCGCATGGAAAA 20362 ||||||||||||||| || ||||||||||| |||||||| || || | ||||||||| | Sbjct 15702 CGGCAAAAAAGCAGCAGCGTTCAAGGAAGCTTACATTGCGGAGTTTAACCGCATGGAAGA 15643 Query 20363 ACAACT 20368 || || Sbjct 15642 GCAGCT 15637 >seq1577 Length=31499 Score = 179 bits (198), Expect = 1e-40 Identities = 238/327 (73%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 29263 ATGACCAGTCAACTCATCCCCGTATTCAACGGCACTATCGACAACGAAACAATTCTTCTA 29322 ||||||| ||| || |||||||| |||||||||||||| ||||||| ||| ||| || Sbjct 22254 ATGACCAATCAGCTTATCCCCGTTTTCAACGGCACTATTTCCAACGAAGCAACTCTACTG 22195 Query 29323 GTTAACGCTCGTGATCTACACTCTTTTCTTGGTGTGGGCAGA-ATGTTCGCGCACTGGGT 29381 | | || ||| | || || || || | ||| || | || || || ||| | Sbjct 22194 TGTGATGCGCGTAAGCTGCATGAATTCCTCGATGTTCGCCGTGATTTTTCAACA-TGGAT 22136 Query 29382 TAAAGAACGCATTGCTGAATATGGATTCATTGAAAGCCAGGACTATATTTTGATTTGCCA 29441 ||| | ||| || | || || |||||||| |||| | |||||| |||||| || || Sbjct 22135 TAAGAACCGCGTTACCGAGTACGGATTCATCGAAAACGCGGACTACATTTTGGTTCATCA 22076 Query 29442 AAATGGGCAAACCAAAGGG---CGAGGAGGTGATCGCCGTAGCAAGGACTACCACCTAAC 29498 || |||| || |||| ||||| || ||| | | |||||||||||||| || || Sbjct 22075 AAGTGGGGGAATCAAAAATACACGAGGTGGAGATAGAAGAAGCAAGGACTACCATCTCAC 22016 Query 29499 TCTCGACACAGCCAAAGAACTGGCGATGGTTGAGCGTAACGAAAAAGGCCGCCAGATCCG 29558 || ||||||| ||||| ||||||||||||||||| ||||| ||||||| ||| | || Sbjct 22015 CCTGAACACAGCAAAAGAGCTGGCGATGGTTGAGCGCAACGAGCAAGGCCGTCAGGTGCG 21956 Query 29559 CCGATACTTCATCGAGTGCGAAAAGAA 29585 || ||||||||||| || || ||||| Sbjct 21955 ACGCTACTTCATCGAATGTGAGAAGAA 21929 Score = 86.0 bits (94), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 7/144 (5%) Strand=Plus/Minus Query 20730 TATATTCTGCCTCATGGTGCTCAAAACACCTTAGCAAGTAGCGGTTACCGCGCCCGACAG 20789 |||| || || || |||||| |||||||||| | ||||||| ||||| |||||||| Sbjct 22462 TATAGTCCGCTACA-GGTGCTGAAAACACCTTTTC--GTAGCGGAAACCGCACCCGACAG 22406 Query 20790 ACATGCGGtttttttGTGTCCAGTCTTCTTGGTTTATGACCGGGCGTGCGGCTAATACAA 20849 |||||||| |||||| ||||| | || |||| ||| | ||| ||| |||| || Sbjct 22405 ACATGCGGATTTTTTACGTCCA---TATTTCAGATATGGCCGAGTGTG-GGCGAATAAAA 22350 Query 20850 TACCAGCAATGGGAATATGCCCGC 20873 ||| | || ||||||| |||||| Sbjct 22349 GACCTGAAAAGGGAATAAGCCCGC 22326 >seq3409 Length=8325 Score = 150 bits (166), Expect = 7e-32 Identities = 264/382 (69%), Gaps = 2/382 (1%) Strand=Plus/Minus Query 4883 CTCCTGGTCGCGACGGGATACCTGACCGTAGCAATTATTTGAGCGGATACGGCAGTCTCT 4942 ||||||||| || || | || ||| ||||| || ||||| | |||||||||||| ||| | Sbjct 3412 CTCCTGGTCACGCCGCGCTATCTGCCCGTAACAGTTATTGGCGCGGATACGGCAATCTTT 3353 Query 4943 GCCACCGTCCTTAATCCACCAGCGAATCGCTTCACACGCTCCCCTGCGATCGCCTGCATT 5002 ||| |||||| |||||| | |||| ||| || || || || ||||||| ||||| Sbjct 3352 GCCTCCGTCCCAAATCCAGCGCTTAATCTCTTTGCAGGCACCAATGAGATCGCCGGCATT 3293 Query 5003 -AATTCGTTTATAAAACGTCGACGGGAAACACTTACCGGGGCCAATGTTGTAAGGACAGA 5061 |||| | || ||||| || | ||| || |||||||| || || || | ||||| | Sbjct 3292 CAATTTG-CGGTAGAACGTTGAGGTGAAGCAGTTACCGGGACCGATATTCCACGGACAAA 3234 Query 5062 ATGACGCGATCCCCGCTTTCTGAGGTTCGGTCAGTGGCACTCTGATGTTTTTCGCCACCC 5121 |||| || || || ||||||||| || || || |||||| | | ||| |||||| Sbjct 3233 ATGAGGCAATGCCGACTTTCTGAGTCTCAGTGAGCGGCACTTTAACGTTGCGATCCACCC 3174 Query 5122 ATGCCAGCGCCTTATCACGTTCAATGGCGTTAACCTGGTCGCATTTTTCCTTCGACAACT 5181 | | |||||||| | |||| ||| | || || | || | | | || || Sbjct 3173 AATCGAGCGCCTTTTGCTGTTCTGCGGCATCAATCTTTGCACACTGCCCGGCGGTCAGCT 3114 Query 5182 TCATGCCGGGGACGACAAGCTTACCATCCACCTGGGTGGCACCACGGCAGATGGTCCAGA 5241 ||||||| || || |||| ||||| ||| | || | |||| ||| || ||||||| Sbjct 3113 TCATGCCCTTCACTACCGGCTTGCCATCTACCCGTGTCACGCCACCGCAAATCGTCCAGA 3054 Query 5242 TACCCACACCATCACGGTATGC 5263 | || | || ||| | || || Sbjct 3053 TGCCGCCGCCGTCAGGATAAGC 3032 Score = 149 bits (164), Expect = 2e-31 Identities = 358/532 (67%), Gaps = 16/532 (3%) Strand=Plus/Minus Query 4103 CATGCGCGGCTTTAACCTGTTTCCACTCATTCAGCCCGGTAGCAAACACACTGGCAATGT 4162 |||| || || |||| ||||||||| |||| || || ||||||| ||||||| | Sbjct 5590 CATGTGCCGCCTTAATGCCTTTCCACTCGTTCAATCCCGTGCCAAACACGCTGGCAACGG 5531 Query 4163 TTTTATCCCGTTTCATGTCAGCGCAGGCCTGATTGAGTTCTTCCATCACACT-CATTCGA 4221 ||| ||| ||| | ||| ||||| || ||||||||| | ||| || || | | | Sbjct 5530 CTTTGTCCGTTTTTAAGTCGGCGCAAGCGGCATTGAGTTCCTGCATGACGCTGCGCTTG- 5472 Query 4222 CGGGGATTAACGACACCCCCCTTCGTCCAGTATTCATAGAGAACATCGTCGCACTCTTCC 4281 |||||||| || || || ||||||||||||||||| || || |||||||| ||| Sbjct 5471 CGGGGATTGGTAACCTGACCTTTTGTCCAGTATTCATAGAGCACGTCATCGCACTCCTCC 5412 Query 4282 TGATACTGGATTACCTTGTCGCGGATTTCGGGTTTTACTTTGTTGGGATTGATGGTTTGT 4341 |||||||| | || |||||||| |||| || || ||||| || || | ||| | Sbjct 5411 TGATACTGAACCACTTTGTCGCGACTTTCTGGCTTAACTTTATTCGGCTGGATACTGGCC 5352 Query 4342 AACCAGCCTGCAAGTTTTCGAAGTGGCAGGGACACCATATTGCGTCGTTTCCCATCCTCA 4401 | |||| | || | ||| || ||| | || | | ||| || | || ||| | | Sbjct 5351 AGCCAGGCAGCCAATTTGCGGAGTTGTAGACAAAGCATTTT---TTGTGGGCCACCTTGG 5295 Query 4402 GCAACCATAACGATTTCCGTTA--TAGTTGACGCAAAACGCTGTCTTAACTTAGCCAACT 4459 | | || | ||||||| | | ||| ||||| || | | |||||| || || Sbjct 5294 GTAGGGATCATGATTTCCATGACCCCCTTG--GCAAAGCGAGATTTCAACTTACCCGCCT 5237 Query 4460 GTGATTGCCAGGCCAGCCCCATCCCCGCAACGACAGGTTTCATGGGAACGTATGGCTCAC 4519 | || | |||| |||||| ||| ||| || || ||| || || || ||| Sbjct 5236 GACCCTGGTATGCCAACCCCATACCCTCAATGATTGGGCGCATCGGGGTATAGGGTTCAT 5177 Query 4520 CGTTATGGTTAACCACATAAAGAGAATCGCCGTGAAACGGCACGGTCATCATATTCATCG 4579 ||||| |||||| ||||| || | || || |||||||| ||||| || | | ||| | Sbjct 5176 CGTTACAGTTAACGACATACAGGGCATTTCCATGAAACGGAACGGTGATTGTTTGCATAG 5117 Query 4580 GTTATTTCCTT--TTA-GTGATGAACCCT--GCGCACAGGAATAACCAGCCC 4626 | ||||| ||| || ||||||| | ||||| |||| || |||||| Sbjct 5116 TGCTTATCCTTACTTAGGTAATGAACCTTTGGCGCATAGGA--AATCAGCCC 5067 Score = 123 bits (136), Expect = 1e-23 Identities = 129/164 (79%), Gaps = 8/164 (5%) Strand=Plus/Plus Query 29110 GGCATAGTCACATCCGTACAAAGGTCGGGTGGAGAGGCGTAATACAATACCCGCAAGGGG 29169 ||| || ||||||||| |||| ||||||||||||||||||||||||| ||||||||| Sbjct 954 GGCGTAATCACATCCG----AAGGCCGGGTGGAGAGGCGTAATACAATACTCGCAAGGGG 1009 Query 29170 AATATGCCCGGAGCATCTTTGAAGGCTCTAGTTGACACCCGATCACCAGCCACTAACTGG 29229 ||||||||| ||| ||| || ||| ||||||| |||| |||||| ||||||||| Sbjct 1010 AATATGCCCAGAGTTGCTTACTAGACTC-AGTTGACGCCCGGCTACCAGCTACTAACTGG 1068 Query 29230 TGATTGCTAACTAAAACTTCAAAGGAGGTCATCATGACCAGTCA 29273 | || | |||| ||||| ||||||| | | ||| | ||||| Sbjct 1069 TAATCG-AAACT-AAACTAGTAAGGAGG-CTTTATGCCAAGTCA 1109 >seq1599 Length=30855 Score = 147 bits (162), Expect = 9e-31 Identities = 225/321 (70%), Gaps = 20/321 (6%) Strand=Plus/Plus Query 29263 ATGACCAGTCAACTCATCCCCGTATTCAACGGCACTATCGACAACGAAACAATTCTTCTA 29322 ||||| | |||||||||||||| ||||| || ||||| |||||| | | || || Sbjct 20022 ATGACAACACAACTCATCCCCGTTTTCAAAGGAACTATAAGTAACGAATCCACCCTACTT 20081 Query 29323 GTTAACGCTCGTGATCTACACTCTTTTCTTGGTGTGGGCAGAATGTTCGCGCACTGGGTT 29382 | | || || || ||||| || |||| | ||| || ||| || Sbjct 20082 TGTGATGCACGCGAGCTACATGAATTCCTTGCCTTTTGCAA--------CG---TGGATT 20130 Query 29383 AAAGAACGCATTGCTGAATATGGATTCATTGAAAGCCAGGACTATATTTTGATTTGCCAA 29442 | ||||| ||||| || | ||| ||| |||||| |||||||| || |||| ||| Sbjct 20131 ACCGAACGGATTGCGGAGTTTGGTTTCGTTGAAAATCAGGACTACATAGCTATTTCCCAG 20190 Query 29443 AATGGGCAAACCAAAGGGCGAGGAGGTGATCGCCGTAGCAAGGACTACCACCTAACTCTC 29502 ||| || ||| ||| | ||| | | | || |||||||||||||| || || Sbjct 20191 AATCGGGAAAT---AGGTCACGGACGAG------GCAGAAAGGACTACCACCTCACCCTG 20241 Query 29503 GACACAGCCAAAGAACTGGCGATGGTTGAGCGTAACGAAAAAGGCCGCCAGATCCGCCGA 29562 |||||||||||||||||||| ||||| |||| ||||| |||||||| ||| | ||||| Sbjct 20242 GACACAGCCAAAGAACTGGCAATGGTGGAGCACAACGACAAAGGCCGTCAGGTTCGCCGT 20301 Query 29563 TACTTCATCGAGTGCGAAAAG 29583 |||||||| ||||| |||||| Sbjct 20302 TACTTCATTGAGTGTGAAAAG 20322 >seq3892 Length=6556 Score = 132 bits (146), Expect = 2e-26 Identities = 219/315 (70%), Gaps = 11/315 (3%) Strand=Plus/Plus Query 29272 CAACTCATCCCCGTATTCAACGGCACTATCGACAACGAAACAATTCTTCTAGTTAACGCT 29331 || |||||||| || || || ||||| || | ||||| | |||||||| ||| ||| Sbjct 3186 CAGCTCATCCCTGTTTTTAATGGCACCATTGCAAACGATTCCATTCTTCTTTGTAATGCT 3245 Query 29332 CGTGATCTACACTCTTTTCTTGGTGTGGGCAGAATGTTCGCGCACTGGGTTAAAGAACGC 29391 || ||||| || ||||| | ||| ||| | || | ||||| || || || Sbjct 3246 CGCGATCTTCATACTTTTTTGAATGTAGGCCGCGACTTTTCCAACTGGATTCGTGAGCGA 3305 Query 29392 ATTGCTGAATATGGATTCATTGAAAGCCAGGACTATATTTTGATTT-GCCAAAATGGGCA 29450 ||| | || || || || | | || | ||||| || | ||| |||| | | ||| Sbjct 3306 ATTTCAGAGTACGGGTTTACCGCAAATCTAGACTACATCGTATTTTCGCCAGATTCGGCG 3365 Query 29451 AACCAAAGGGCGAGGAGGTGATCGCCGTAGCAAGGACTACCACCTAACTCTCGACACAGC 29510 || || | || | || || || ||||||||||| || || |||||||| || Sbjct 3366 AA--AACTGTCGGG--------CGTCGCAGAAAGGACTACCAGCTCACCCTCGACACTGC 3415 Query 29511 CAAAGAACTGGCGATGGTTGAGCGTAACGAAAAAGGCCGCCAGATCCGCCGATACTTCAT 29570 ||||||||||||||||||||||| ||||| ||||||| ||| | || || |||||||| Sbjct 3416 TAAAGAACTGGCGATGGTTGAGCGCAACGAGCAAGGCCGTCAGGTGCGACGCTACTTCAT 3475 Query 29571 CGAGTGCGAAAAGAA 29585 ||| || || ||||| Sbjct 3476 CGAATGTGAGAAGAA 3490 >seq2784 Length=12453 Score = 93.3 bits (102), Expect = 2e-14 Identities = 144/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 16004 GTTATTAAAATGTCAACACCGCAGATATTTCATTACATATAACCAAAGGTGATATGGTAT 16063 |||||||| | |||||||||| | ||| || |||| | | |||||||| | | Sbjct 6092 GTTATTAATAAGTCAACACCGTCTGTTTTTGTTTG-ATATTCCAATTGGTGATATCATTT 6150 Query 16064 GAACATGAAAAAGAAACCGTTAACCCCTGAGCAACTGGAAGACGCCAAGCGTCTGAAAAG 16123 | |||||||||||| | |||| ||||| || || ||||| || | | | || || || Sbjct 6151 TTATATGAAAAAGAAAACATTAAGTCCTGAACAGCTTGAAGATGCGATGAGGCTCAAGAG 6210 Query 16124 TATTTTTAACGCTAAA-AAGAAAGAGTTAGGCCTGTCGCAGGAATCATTAGCCTATGAAT 16182 |||||| | | |||| || |||||| ||||| | || || || || ||||| |||| Sbjct 6211 CATTTTTGA-GTTAAAGAAAAAAGAGCTAGGCTTTTCACAAGAGTCTATAGCCCATGAGC 6269 Query 16183 TAGGTGTTACCCAAAGCGCTGT 16204 ||||| | | ||||||| ||| Sbjct 6270 TAGGTATGAGGCAAAGCGGTGT 6291 >seq4482 Length=5216 Score = 82.4 bits (90), Expect = 3e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 20272 ACGGCTTCGTTTTTCTG-GTGATGGGCTTCACCGGCAAAAAAGCAGCTGCATTCAAGGAA 20330 |||| ||||| || || || |||||||||||||||||||| ||||| | ||||||||| Sbjct 1396 ACGGTTTCGTCTTCCTTCGTTATGGGCTTCACCGGCAAAAAGGCAGCAGTGTTCAAGGAA 1337 Query 20331 GCCTACATTGCTGAATTCGATCGCATGGAA 20360 || ||||| || || || | ||||||||| Sbjct 1336 GCTTACATCGCGGAGTTTAACCGCATGGAA 1307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195152069119218