Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_028660.1
Length=61035
Score E
Sequences producing significant alignments: (Bits) Value
seq2192 219 2e-52
seq1577 179 1e-40
seq3409 150 7e-32
seq1599 147 9e-31
seq3892 132 2e-26
seq2784 93.3 2e-14
seq4482 82.4 3e-11
>seq2192
Length=16777
Score = 219 bits (242), Expect = 2e-52
Identities = 232/306 (76%), Gaps = 0/306 (0%)
Strand=Plus/Minus
Query 20063 CCTTTCTCAACCTGAAATCACCATTTCCAATGGTCGCGCTGTTACTACGTCCTTTGCCGT 20122
|||| || ||| || |||| || ||||||| ||||| ||||| || || | |||
Sbjct 15942 CCTTGCTGCACCCAAAGTCACTATCCGCAATGGTAAAGCTGTAACTACATCATTGGACGT 15883
Query 20123 TGCCGAATATTTTTGCAAGCGACACGATAACGTATTGCGCGCCATTGCAAATATTGAATG 20182
||| || || ||| |||||| |||||||||||||| ||| |||||| | |||| ||
Sbjct 15882 TGCTGATTACTTTGACAAGCGTCACGATAACGTATTACGCACCATTGAACGCCTTGATTG 15823
Query 20183 CTCAGAGAAATTTAACGCCCTCAATTTTGAGGACGTTACCTACACCGACGCCAAAGGCGA 20242
||| || ||||||| |||||||||||||||| | ||||||||| || ||||
Sbjct 15822 CTCTGAAAAATTTACTGCCCTCAATTTTGAGGTGAGTGAATACACCGACAGCACAGGCCG 15763
Query 20243 ACAACGCCCAATGTACCAAATCACCAAAAACGGCTTCGTTTTTCTGGTGATGGGCTTCAC 20302
||| || ||||| || ||||| |||||||| ||||||| || |||||||||||
Sbjct 15762 CAAACTACCGATGTATACCATAACCAAGGACGGCTTCATTTTTCTCGTCATGGGCTTCAC 15703
Query 20303 CGGCAAAAAAGCAGCTGCATTCAAGGAAGCCTACATTGCTGAATTCGATCGCATGGAAAA 20362
||||||||||||||| || ||||||||||| |||||||| || || | ||||||||| |
Sbjct 15702 CGGCAAAAAAGCAGCAGCGTTCAAGGAAGCTTACATTGCGGAGTTTAACCGCATGGAAGA 15643
Query 20363 ACAACT 20368
|| ||
Sbjct 15642 GCAGCT 15637
>seq1577
Length=31499
Score = 179 bits (198), Expect = 1e-40
Identities = 238/327 (73%), Gaps = 5/327 (2%)
Strand=Plus/Minus
Query 29263 ATGACCAGTCAACTCATCCCCGTATTCAACGGCACTATCGACAACGAAACAATTCTTCTA 29322
||||||| ||| || |||||||| |||||||||||||| ||||||| ||| ||| ||
Sbjct 22254 ATGACCAATCAGCTTATCCCCGTTTTCAACGGCACTATTTCCAACGAAGCAACTCTACTG 22195
Query 29323 GTTAACGCTCGTGATCTACACTCTTTTCTTGGTGTGGGCAGA-ATGTTCGCGCACTGGGT 29381
| | || ||| | || || || || | ||| || | || || || ||| |
Sbjct 22194 TGTGATGCGCGTAAGCTGCATGAATTCCTCGATGTTCGCCGTGATTTTTCAACA-TGGAT 22136
Query 29382 TAAAGAACGCATTGCTGAATATGGATTCATTGAAAGCCAGGACTATATTTTGATTTGCCA 29441
||| | ||| || | || || |||||||| |||| | |||||| |||||| || ||
Sbjct 22135 TAAGAACCGCGTTACCGAGTACGGATTCATCGAAAACGCGGACTACATTTTGGTTCATCA 22076
Query 29442 AAATGGGCAAACCAAAGGG---CGAGGAGGTGATCGCCGTAGCAAGGACTACCACCTAAC 29498
|| |||| || |||| ||||| || ||| | | |||||||||||||| || ||
Sbjct 22075 AAGTGGGGGAATCAAAAATACACGAGGTGGAGATAGAAGAAGCAAGGACTACCATCTCAC 22016
Query 29499 TCTCGACACAGCCAAAGAACTGGCGATGGTTGAGCGTAACGAAAAAGGCCGCCAGATCCG 29558
|| ||||||| ||||| ||||||||||||||||| ||||| ||||||| ||| | ||
Sbjct 22015 CCTGAACACAGCAAAAGAGCTGGCGATGGTTGAGCGCAACGAGCAAGGCCGTCAGGTGCG 21956
Query 29559 CCGATACTTCATCGAGTGCGAAAAGAA 29585
|| ||||||||||| || || |||||
Sbjct 21955 ACGCTACTTCATCGAATGTGAGAAGAA 21929
Score = 86.0 bits (94), Expect = 2e-12
Identities = 108/144 (75%), Gaps = 7/144 (5%)
Strand=Plus/Minus
Query 20730 TATATTCTGCCTCATGGTGCTCAAAACACCTTAGCAAGTAGCGGTTACCGCGCCCGACAG 20789
|||| || || || |||||| |||||||||| | ||||||| ||||| ||||||||
Sbjct 22462 TATAGTCCGCTACA-GGTGCTGAAAACACCTTTTC--GTAGCGGAAACCGCACCCGACAG 22406
Query 20790 ACATGCGGtttttttGTGTCCAGTCTTCTTGGTTTATGACCGGGCGTGCGGCTAATACAA 20849
|||||||| |||||| ||||| | || |||| ||| | ||| ||| |||| ||
Sbjct 22405 ACATGCGGATTTTTTACGTCCA---TATTTCAGATATGGCCGAGTGTG-GGCGAATAAAA 22350
Query 20850 TACCAGCAATGGGAATATGCCCGC 20873
||| | || ||||||| ||||||
Sbjct 22349 GACCTGAAAAGGGAATAAGCCCGC 22326
>seq3409
Length=8325
Score = 150 bits (166), Expect = 7e-32
Identities = 264/382 (69%), Gaps = 2/382 (1%)
Strand=Plus/Minus
Query 4883 CTCCTGGTCGCGACGGGATACCTGACCGTAGCAATTATTTGAGCGGATACGGCAGTCTCT 4942
||||||||| || || | || ||| ||||| || ||||| | |||||||||||| ||| |
Sbjct 3412 CTCCTGGTCACGCCGCGCTATCTGCCCGTAACAGTTATTGGCGCGGATACGGCAATCTTT 3353
Query 4943 GCCACCGTCCTTAATCCACCAGCGAATCGCTTCACACGCTCCCCTGCGATCGCCTGCATT 5002
||| |||||| |||||| | |||| ||| || || || || ||||||| |||||
Sbjct 3352 GCCTCCGTCCCAAATCCAGCGCTTAATCTCTTTGCAGGCACCAATGAGATCGCCGGCATT 3293
Query 5003 -AATTCGTTTATAAAACGTCGACGGGAAACACTTACCGGGGCCAATGTTGTAAGGACAGA 5061
|||| | || ||||| || | ||| || |||||||| || || || | ||||| |
Sbjct 3292 CAATTTG-CGGTAGAACGTTGAGGTGAAGCAGTTACCGGGACCGATATTCCACGGACAAA 3234
Query 5062 ATGACGCGATCCCCGCTTTCTGAGGTTCGGTCAGTGGCACTCTGATGTTTTTCGCCACCC 5121
|||| || || || ||||||||| || || || |||||| | | ||| ||||||
Sbjct 3233 ATGAGGCAATGCCGACTTTCTGAGTCTCAGTGAGCGGCACTTTAACGTTGCGATCCACCC 3174
Query 5122 ATGCCAGCGCCTTATCACGTTCAATGGCGTTAACCTGGTCGCATTTTTCCTTCGACAACT 5181
| | |||||||| | |||| ||| | || || | || | | | || ||
Sbjct 3173 AATCGAGCGCCTTTTGCTGTTCTGCGGCATCAATCTTTGCACACTGCCCGGCGGTCAGCT 3114
Query 5182 TCATGCCGGGGACGACAAGCTTACCATCCACCTGGGTGGCACCACGGCAGATGGTCCAGA 5241
||||||| || || |||| ||||| ||| | || | |||| ||| || |||||||
Sbjct 3113 TCATGCCCTTCACTACCGGCTTGCCATCTACCCGTGTCACGCCACCGCAAATCGTCCAGA 3054
Query 5242 TACCCACACCATCACGGTATGC 5263
| || | || ||| | || ||
Sbjct 3053 TGCCGCCGCCGTCAGGATAAGC 3032
Score = 149 bits (164), Expect = 2e-31
Identities = 358/532 (67%), Gaps = 16/532 (3%)
Strand=Plus/Minus
Query 4103 CATGCGCGGCTTTAACCTGTTTCCACTCATTCAGCCCGGTAGCAAACACACTGGCAATGT 4162
|||| || || |||| ||||||||| |||| || || ||||||| ||||||| |
Sbjct 5590 CATGTGCCGCCTTAATGCCTTTCCACTCGTTCAATCCCGTGCCAAACACGCTGGCAACGG 5531
Query 4163 TTTTATCCCGTTTCATGTCAGCGCAGGCCTGATTGAGTTCTTCCATCACACT-CATTCGA 4221
||| ||| ||| | ||| ||||| || ||||||||| | ||| || || | | |
Sbjct 5530 CTTTGTCCGTTTTTAAGTCGGCGCAAGCGGCATTGAGTTCCTGCATGACGCTGCGCTTG- 5472
Query 4222 CGGGGATTAACGACACCCCCCTTCGTCCAGTATTCATAGAGAACATCGTCGCACTCTTCC 4281
|||||||| || || || ||||||||||||||||| || || |||||||| |||
Sbjct 5471 CGGGGATTGGTAACCTGACCTTTTGTCCAGTATTCATAGAGCACGTCATCGCACTCCTCC 5412
Query 4282 TGATACTGGATTACCTTGTCGCGGATTTCGGGTTTTACTTTGTTGGGATTGATGGTTTGT 4341
|||||||| | || |||||||| |||| || || ||||| || || | ||| |
Sbjct 5411 TGATACTGAACCACTTTGTCGCGACTTTCTGGCTTAACTTTATTCGGCTGGATACTGGCC 5352
Query 4342 AACCAGCCTGCAAGTTTTCGAAGTGGCAGGGACACCATATTGCGTCGTTTCCCATCCTCA 4401
| |||| | || | ||| || ||| | || | | ||| || | || ||| | |
Sbjct 5351 AGCCAGGCAGCCAATTTGCGGAGTTGTAGACAAAGCATTTT---TTGTGGGCCACCTTGG 5295
Query 4402 GCAACCATAACGATTTCCGTTA--TAGTTGACGCAAAACGCTGTCTTAACTTAGCCAACT 4459
| | || | ||||||| | | ||| ||||| || | | |||||| || ||
Sbjct 5294 GTAGGGATCATGATTTCCATGACCCCCTTG--GCAAAGCGAGATTTCAACTTACCCGCCT 5237
Query 4460 GTGATTGCCAGGCCAGCCCCATCCCCGCAACGACAGGTTTCATGGGAACGTATGGCTCAC 4519
| || | |||| |||||| ||| ||| || || ||| || || || |||
Sbjct 5236 GACCCTGGTATGCCAACCCCATACCCTCAATGATTGGGCGCATCGGGGTATAGGGTTCAT 5177
Query 4520 CGTTATGGTTAACCACATAAAGAGAATCGCCGTGAAACGGCACGGTCATCATATTCATCG 4579
||||| |||||| ||||| || | || || |||||||| ||||| || | | ||| |
Sbjct 5176 CGTTACAGTTAACGACATACAGGGCATTTCCATGAAACGGAACGGTGATTGTTTGCATAG 5117
Query 4580 GTTATTTCCTT--TTA-GTGATGAACCCT--GCGCACAGGAATAACCAGCCC 4626
| ||||| ||| || ||||||| | ||||| |||| || ||||||
Sbjct 5116 TGCTTATCCTTACTTAGGTAATGAACCTTTGGCGCATAGGA--AATCAGCCC 5067
Score = 123 bits (136), Expect = 1e-23
Identities = 129/164 (79%), Gaps = 8/164 (5%)
Strand=Plus/Plus
Query 29110 GGCATAGTCACATCCGTACAAAGGTCGGGTGGAGAGGCGTAATACAATACCCGCAAGGGG 29169
||| || ||||||||| |||| ||||||||||||||||||||||||| |||||||||
Sbjct 954 GGCGTAATCACATCCG----AAGGCCGGGTGGAGAGGCGTAATACAATACTCGCAAGGGG 1009
Query 29170 AATATGCCCGGAGCATCTTTGAAGGCTCTAGTTGACACCCGATCACCAGCCACTAACTGG 29229
||||||||| ||| ||| || ||| ||||||| |||| |||||| |||||||||
Sbjct 1010 AATATGCCCAGAGTTGCTTACTAGACTC-AGTTGACGCCCGGCTACCAGCTACTAACTGG 1068
Query 29230 TGATTGCTAACTAAAACTTCAAAGGAGGTCATCATGACCAGTCA 29273
| || | |||| ||||| ||||||| | | ||| | |||||
Sbjct 1069 TAATCG-AAACT-AAACTAGTAAGGAGG-CTTTATGCCAAGTCA 1109
>seq1599
Length=30855
Score = 147 bits (162), Expect = 9e-31
Identities = 225/321 (70%), Gaps = 20/321 (6%)
Strand=Plus/Plus
Query 29263 ATGACCAGTCAACTCATCCCCGTATTCAACGGCACTATCGACAACGAAACAATTCTTCTA 29322
||||| | |||||||||||||| ||||| || ||||| |||||| | | || ||
Sbjct 20022 ATGACAACACAACTCATCCCCGTTTTCAAAGGAACTATAAGTAACGAATCCACCCTACTT 20081
Query 29323 GTTAACGCTCGTGATCTACACTCTTTTCTTGGTGTGGGCAGAATGTTCGCGCACTGGGTT 29382
| | || || || ||||| || |||| | ||| || ||| ||
Sbjct 20082 TGTGATGCACGCGAGCTACATGAATTCCTTGCCTTTTGCAA--------CG---TGGATT 20130
Query 29383 AAAGAACGCATTGCTGAATATGGATTCATTGAAAGCCAGGACTATATTTTGATTTGCCAA 29442
| ||||| ||||| || | ||| ||| |||||| |||||||| || |||| |||
Sbjct 20131 ACCGAACGGATTGCGGAGTTTGGTTTCGTTGAAAATCAGGACTACATAGCTATTTCCCAG 20190
Query 29443 AATGGGCAAACCAAAGGGCGAGGAGGTGATCGCCGTAGCAAGGACTACCACCTAACTCTC 29502
||| || ||| ||| | ||| | | | || |||||||||||||| || ||
Sbjct 20191 AATCGGGAAAT---AGGTCACGGACGAG------GCAGAAAGGACTACCACCTCACCCTG 20241
Query 29503 GACACAGCCAAAGAACTGGCGATGGTTGAGCGTAACGAAAAAGGCCGCCAGATCCGCCGA 29562
|||||||||||||||||||| ||||| |||| ||||| |||||||| ||| | |||||
Sbjct 20242 GACACAGCCAAAGAACTGGCAATGGTGGAGCACAACGACAAAGGCCGTCAGGTTCGCCGT 20301
Query 29563 TACTTCATCGAGTGCGAAAAG 29583
|||||||| ||||| ||||||
Sbjct 20302 TACTTCATTGAGTGTGAAAAG 20322
>seq3892
Length=6556
Score = 132 bits (146), Expect = 2e-26
Identities = 219/315 (70%), Gaps = 11/315 (3%)
Strand=Plus/Plus
Query 29272 CAACTCATCCCCGTATTCAACGGCACTATCGACAACGAAACAATTCTTCTAGTTAACGCT 29331
|| |||||||| || || || ||||| || | ||||| | |||||||| ||| |||
Sbjct 3186 CAGCTCATCCCTGTTTTTAATGGCACCATTGCAAACGATTCCATTCTTCTTTGTAATGCT 3245
Query 29332 CGTGATCTACACTCTTTTCTTGGTGTGGGCAGAATGTTCGCGCACTGGGTTAAAGAACGC 29391
|| ||||| || ||||| | ||| ||| | || | ||||| || || ||
Sbjct 3246 CGCGATCTTCATACTTTTTTGAATGTAGGCCGCGACTTTTCCAACTGGATTCGTGAGCGA 3305
Query 29392 ATTGCTGAATATGGATTCATTGAAAGCCAGGACTATATTTTGATTT-GCCAAAATGGGCA 29450
||| | || || || || | | || | ||||| || | ||| |||| | | |||
Sbjct 3306 ATTTCAGAGTACGGGTTTACCGCAAATCTAGACTACATCGTATTTTCGCCAGATTCGGCG 3365
Query 29451 AACCAAAGGGCGAGGAGGTGATCGCCGTAGCAAGGACTACCACCTAACTCTCGACACAGC 29510
|| || | || | || || || ||||||||||| || || |||||||| ||
Sbjct 3366 AA--AACTGTCGGG--------CGTCGCAGAAAGGACTACCAGCTCACCCTCGACACTGC 3415
Query 29511 CAAAGAACTGGCGATGGTTGAGCGTAACGAAAAAGGCCGCCAGATCCGCCGATACTTCAT 29570
||||||||||||||||||||||| ||||| ||||||| ||| | || || ||||||||
Sbjct 3416 TAAAGAACTGGCGATGGTTGAGCGCAACGAGCAAGGCCGTCAGGTGCGACGCTACTTCAT 3475
Query 29571 CGAGTGCGAAAAGAA 29585
||| || || |||||
Sbjct 3476 CGAATGTGAGAAGAA 3490
>seq2784
Length=12453
Score = 93.3 bits (102), Expect = 2e-14
Identities = 144/202 (71%), Gaps = 3/202 (1%)
Strand=Plus/Plus
Query 16004 GTTATTAAAATGTCAACACCGCAGATATTTCATTACATATAACCAAAGGTGATATGGTAT 16063
|||||||| | |||||||||| | ||| || |||| | | |||||||| | |
Sbjct 6092 GTTATTAATAAGTCAACACCGTCTGTTTTTGTTTG-ATATTCCAATTGGTGATATCATTT 6150
Query 16064 GAACATGAAAAAGAAACCGTTAACCCCTGAGCAACTGGAAGACGCCAAGCGTCTGAAAAG 16123
| |||||||||||| | |||| ||||| || || ||||| || | | | || || ||
Sbjct 6151 TTATATGAAAAAGAAAACATTAAGTCCTGAACAGCTTGAAGATGCGATGAGGCTCAAGAG 6210
Query 16124 TATTTTTAACGCTAAA-AAGAAAGAGTTAGGCCTGTCGCAGGAATCATTAGCCTATGAAT 16182
|||||| | | |||| || |||||| ||||| | || || || || ||||| ||||
Sbjct 6211 CATTTTTGA-GTTAAAGAAAAAAGAGCTAGGCTTTTCACAAGAGTCTATAGCCCATGAGC 6269
Query 16183 TAGGTGTTACCCAAAGCGCTGT 16204
||||| | | ||||||| |||
Sbjct 6270 TAGGTATGAGGCAAAGCGGTGT 6291
>seq4482
Length=5216
Score = 82.4 bits (90), Expect = 3e-11
Identities = 73/90 (81%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 20272 ACGGCTTCGTTTTTCTG-GTGATGGGCTTCACCGGCAAAAAAGCAGCTGCATTCAAGGAA 20330
|||| ||||| || || || |||||||||||||||||||| ||||| | |||||||||
Sbjct 1396 ACGGTTTCGTCTTCCTTCGTTATGGGCTTCACCGGCAAAAAGGCAGCAGTGTTCAAGGAA 1337
Query 20331 GCCTACATTGCTGAATTCGATCGCATGGAA 20360
|| ||||| || || || | |||||||||
Sbjct 1336 GCTTACATCGCGGAGTTTAACCGCATGGAA 1307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 195152069119218
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